Set 04: DM Progression

Phenotypes:
DMproB
accumulated DM proB cells - 6 Samples
DMpreB
leukemic DM preB cells - 6 Samples
transDMproB
transitional DM proB cells - 5 Samples
transDMpreB
transitional DM preB cells - 5 Samples
LMproB
normal progenitor B cells - 6 Samples
WTpreB
normal precursor B cells - 4 Samples

Platform: Illumina MouseRef_8V1

GSEA-preRanked reports for "moderated t-Test":


 MSigDB.c2.cp MSigDB.c3 MSigDB.c5 Pathways
DMpreB vs. WTpreB Report
 Report
 Report
 Report
DMproB vs. LMproB Report
 Report
 Report
 Report
transDMpreB vs. DMpreB Report
 Report
 Report
 Report
transDMpreB vs. WTpreB Report
 Report
 Report
 Report
transDMproB vs. DMpreB Report
 Report
 Report
 Report
transDMproB vs. LMproB Report
 Report
 Report
 Report
transDMproB vs. transDMpreB Report
 Report
 Report
 Report

Note:
The ranked gene lists were extracted from the files "2008_GuidosLeukemiaData/03_DM progression_GEP/Analyzed data/t-tests/top24613_*_6gp.csv" with the R-Code posted on:
 http://baderlab.org/CancerStemCellProject/CodeRepository#extract_moderated_tStatisctic_to_RNK_Set04.R

GSEA reports for "GSEA t-Test":


 MSigDB.c2.cp MSigDB.c3 MSigDB.c5 Pathways
DMpreB vs. WTpreB Report
 Report
 Report
 Report
DMproB vs. LMproB Report
 Report
 Report
 Report
transDMpreB vs. DMpreB Report
 Report
 Report
 Report
transDMpreB vs. WTpreB Report
 Report
 Report
 Report
transDMproB vs. DMpreB Report
 Report
 Report
 Report
transDMproB vs. LMproB Report
 Report
 Report
 Report
transDMproB vs. transDMpreB Report
 Report
 Report
 Report

GSEA reports for "Log2_Ratio_of_Classes":


 MSigDB.c2.cp MSigDB.c3 MSigDB.c5 Pathways
DMpreB vs. WTpreB Report
 Report
 Report
 Report
DMproB vs. LMproB Report
 Report
 Report
 Report
transDMpreB vs. DMpreB Report
 Report
 Report
 Report
transDMpreB vs. WTpreB Report
 Report
 Report
 Report
transDMproB vs. DMpreB Report
 Report
 Report
 Report
transDMproB vs. LMproB Report
 Report
 Report
 Report
transDMproB vs. transDMpreB Report
 Report
 Report
 Report