Set 01: ATM / SCID

Phenotypes:
ATM_minus
ATM-/- Tumor - 4 Samples
ATM_plus
ATM+/+ normal thymocytes - 3 Samples
SCID
Irradiated New-Born SCID cells - 3 Samples

Platform: Affymetrix MOE430 v2

GSEA-preRanked reports for "moderated t-Test":


MSigDB.c2 MSigDB.c3.tft MSigDB.c5 Pathways
ATMminus vs. ATMplus Report
Report
Report
Report
ATMminus vs. SCID Report
Report
Report
Report
SCID vs. ATMplus Report
Report
Report
Report

Note:
The ranked gene lists were extracted from a files named "pvals.txt" with the R-Code posted on:
http://baderlab.org/CancerStemCellProject/CodeRepository#extract_moderated_tStatisctic_to_RNK_Set01_ATM_SCID.R
The R-Code to calculate the moderated t-Test is archived on:
http://baderlab.org/CancerStemCellProject/CodeRepository#moderated_t_Statistic_for_Set_01


GSEA reports for "GSEA t-Test":


MSigDB.c2 MSigDB.c3.tft MSigDB.c5 Pathways
ATMminus vs. ATMplus Report Report Report Report
ATMminus vs. SCID Report Report Report Report
SCID vs. ATMplus Report Report Report Report

GSEA reports for "Log2_Ratio_of_Classes":


MSigDB.c2 MSigDB.c3.tft MSigDB.c5 Pathways
ATMminus vs. ATMplus Report Report Report Report
ATMminus vs. SCID Report Report Report Report
SCID vs. ATMplus Report Report Report Report