Set 02: ATM / BT_ATM
Phenotypes:
- ATM_minus
- ATM-/- Tumor - 4 Samples (actually from Set 01)
- BT_ATM_minus
- ATM-/- cell before Tumor - 5 Samples
- ATM_plus
- ATM+/+ normal thymocytes - 3 Samples from Set_01 (littermates) and 4 new Samples (age-matched)
Platform: Affymetrix MOE430 v2
GSEA-preRanked reports for "moderated t-Test":
Note: In this GSEA-preRanked analysis we have used only those four ATMplus (wt) samples from the second Experiment (age matched mice)
and not those also included in the Set_01 (littermate ATMplus).
Note 2:
The ranked gene lists were extracted from a files named "pvals.txt" with the R-Code posted on:
http://baderlab.org/CancerStemCellProject/CodeRepository#extract_moderated_tStatisctic_to_RNK_Set02_ATM_BTATM.R
The R-Code to calculate the moderated t-Test is archived on:
http://baderlab.org/CancerStemCellProject/CodeRepository#moderated_t_Statistic_for_Set_02
GSEA reports for "GSEA t-Test":
GSEA reports for "Log2_Ratio_of_Classes":