Details for gene set POSITIVE_REGULATION_OF

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #truncNotch_versus_wtNotch
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#truncNotch_versus_wtNotch
Upregulated in class	wtNotch
GeneSet	POSITIVE_REGULATION_OF_TRANSCRIPTION
Enrichment Score (ES)	-0.6189524
Normalized Enrichment Score (NES)	-1.5793587
Nominal p-value	0.0
FDR q-value	0.26977193
FWER p-Value	0.97

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EGR1	4610347	214	1.010	0.0213	No
2	ERCC2	2360750 4060390 6550138	470	0.657	0.0288	No
3	SMAD3	6450671	532	0.607	0.0453	No
4	SQSTM1	6550056	1025	0.393	0.0315	No
5	BMP7	870039	1090	0.375	0.0402	No
6	HMGA1	6580408	1226	0.349	0.0442	No
7	SCAP	3800706	1230	0.349	0.0554	No
8	SMARCD1	3060193 3850184 6400369	1240	0.347	0.0662	No
9	SUPT4H1	6200056	1313	0.332	0.0731	No
10	RBM14	5340731 5690315	1486	0.297	0.0735	No
11	MRPL12	3120112	1636	0.270	0.0742	No
12	NUP62	1240128	1640	0.269	0.0828	No
13	EPC1	1570050 5290095 6900193	2078	0.205	0.0658	No
14	MYST3	5270500	2270	0.181	0.0614	No
15	TRIM28	380292	2399	0.165	0.0598	No
16	TGFB1	1940162	2566	0.146	0.0556	No
17	SUPT5H	4150546	2670	0.135	0.0544	No
18	SPI1	1410397	2778	0.125	0.0527	No
19	MYST1	2190397	2865	0.117	0.0519	No
20	EPAS1	5290156	3250	0.090	0.0341	No
21	DYRK1B	5860706	3519	0.076	0.0221	No
22	TP53	6130707	3540	0.075	0.0234	No
23	CAMKK2	5270047	3860	0.062	0.0082	No
24	SMARCD3	4070497	3998	0.058	0.0027	No
25	HNF4A	6620440	4142	0.053	-0.0033	No
26	ELL3	1770484	4241	0.050	-0.0070	No
27	GLI2	3060632	4406	0.046	-0.0144	No
28	FOXP3	940707 1850692	4525	0.043	-0.0194	No
29	PLAGL1	3190082 6200193	4597	0.041	-0.0219	No
30	ACVR1	6840671	4738	0.039	-0.0282	No
31	FOXO3	2510484 4480451	4783	0.038	-0.0293	No
32	THRAP3	6180309	4835	0.037	-0.0309	No
33	CITED2	5670114 5130088	4868	0.036	-0.0314	No
34	MAP2K3	5570193	5082	0.032	-0.0419	No
35	FOXE1	4810164	5098	0.032	-0.0417	No
36	CREB5	2320368	5656	0.024	-0.0710	No
37	UTF1	5700593	5824	0.023	-0.0792	No
38	IL4	6020537	6057	0.020	-0.0911	No
39	ACVRL1	3290600	6155	0.019	-0.0957	No
40	GLIS2	4150471 4810170	6309	0.018	-0.1034	No
41	TBX5	2900132 6370484	6316	0.018	-0.1031	No
42	NUFIP1	6350241	6390	0.017	-0.1065	No
43	CDK7	2640451	7752	0.009	-0.1797	No
44	NPAS2	770670	7804	0.009	-0.1822	No
45	RORB	6400035	7857	0.009	-0.1847	No
46	MKL2	5700204	8056	0.008	-0.1951	No
47	NRIP1	3190039	8083	0.008	-0.1963	No
48	FOXF2	1240091	8114	0.008	-0.1977	No
49	GATA4	1410215 2690609	8594	0.006	-0.2233	No
50	HIF1A	5670605	8842	0.005	-0.2365	No
51	ESRRG	4010181	9935	0.002	-0.2954	No
52	EHF	4560088	9976	0.002	-0.2975	No
53	IRF4	610133	10272	0.001	-0.3134	No
54	SMARCA1	4230315	10479	0.001	-0.3245	No
55	ARNT2	1740594	11133	-0.001	-0.3598	No
56	BMP6	2100128	11286	-0.002	-0.3679	No
57	NCOA6	1780333 6450110	11459	-0.002	-0.3772	No
58	MYST4	1400563 2570687 3360458 6840402	11916	-0.004	-0.4017	No
59	GLI1	4560176	11972	-0.004	-0.4045	No
60	FOXD3	6550156	12005	-0.004	-0.4061	No
61	FOXH1	2060180	12354	-0.005	-0.4248	No
62	RGMB	670504 4570450	12529	-0.006	-0.4340	No
63	YWHAH	1660133 2810053	12889	-0.008	-0.4531	No
64	PAX8	5050301 5290164	13741	-0.014	-0.4987	No
65	BPTF	940541 4540152	14159	-0.019	-0.5206	No
66	CLOCK	1410070 2940292 3390075	14298	-0.021	-0.5274	No
67	NFATC2	70450 540097	14309	-0.021	-0.5272	No
68	RXRA	3800471	14505	-0.024	-0.5370	No
69	TCF3	5080022	14733	-0.029	-0.5483	No
70	NOTCH4	2450040 6370707	14957	-0.035	-0.5592	No
71	GLIS1	840471	15182	-0.045	-0.5698	No
72	UBB	4810138	15183	-0.045	-0.5684	No
73	ELF4	4850193	15444	-0.057	-0.5806	No
74	HIVEP3	3990551	15632	-0.069	-0.5884	No
75	NARG1	5910563 6350095	15804	-0.081	-0.5951	No
76	BCL10	2360397	15829	-0.083	-0.5936	No
77	TRERF1	6370017 6940138	15841	-0.084	-0.5915	No
78	ERCC3	6900008	15992	-0.095	-0.5965	No
79	NSD1	4560519 4780672	16074	-0.102	-0.5976	No
80	YAF2	940053	16441	-0.141	-0.6127	No
81	PPARGC1B	3290114	16512	-0.152	-0.6116	No
82	MYO6	2190332	16625	-0.169	-0.6121	No
83	BCL3	3990440	16752	-0.187	-0.6129	Yes
84	MED6	6840500	16755	-0.187	-0.6069	Yes
85	SP1	6590017	16838	-0.205	-0.6047	Yes
86	ARNTL	3170463	16863	-0.209	-0.5992	Yes
87	PHF5A	2690519	16977	-0.228	-0.5979	Yes
88	TNFRSF1A	1090390 6520735	17180	-0.268	-0.6001	Yes
89	ILF2	2900253	17184	-0.270	-0.5915	Yes
90	SMAD2	4200592	17271	-0.295	-0.5865	Yes
91	MNAT1	730292 2350364	17289	-0.300	-0.5777	Yes
92	CREBBP	5690035 7040050	17381	-0.327	-0.5720	Yes
93	TCF4	520021	17388	-0.328	-0.5617	Yes
94	HNRPAB	540504	17390	-0.328	-0.5511	Yes
95	MAML1	2760008	17520	-0.360	-0.5464	Yes
96	GTF2H1	2570746 2650148	17587	-0.381	-0.5375	Yes
97	MED12	4920095	17715	-0.430	-0.5304	Yes
98	RSF1	1580097	17746	-0.443	-0.5176	Yes
99	RUNX1	3840711	18014	-0.563	-0.5137	Yes
100	ARHGEF11	1780288	18092	-0.610	-0.4980	Yes
101	CCNH	3190347	18256	-0.727	-0.4832	Yes
102	ATF7IP	2690176 6770021	18287	-0.759	-0.4602	Yes
103	SMARCC1	5080019 7100047	18369	-0.848	-0.4370	Yes
104	XRCC6	2850450 3870528	18427	-0.927	-0.4099	Yes
105	CTCF	5340017	18434	-0.936	-0.3798	Yes
106	ELF1	4780450	18546	-1.372	-0.3413	Yes
107	ILF3	940722 3190647 6520110	18599	-2.087	-0.2762	Yes
108	ATF4	730441 1740195	18600	-2.197	-0.2048	Yes
109	ARID1A	2630022 1690551 4810110	18616	-6.327	0.0000	Yes