Details for gene set POSITIVE_REGULATION_OF_RNA_METABOLIC

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #truncNotch_versus_wtNotch
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#truncNotch_versus_wtNotch
Upregulated in class	wtNotch
GeneSet	POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS
Enrichment Score (ES)	-0.6766078
Normalized Enrichment Score (NES)	-1.6761152
Nominal p-value	0.0025188916
FDR q-value	0.12045273
FWER p-Value	0.456

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ERCC2	2360750 4060390 6550138	470	0.657	-0.0018	No
2	SMAD3	6450671	532	0.607	0.0168	No
3	SQSTM1	6550056	1025	0.393	0.0044	No
4	HMGA1	6580408	1226	0.349	0.0061	No
5	SCAP	3800706	1230	0.349	0.0185	No
6	SMARCD1	3060193 3850184 6400369	1240	0.347	0.0305	No
7	SUPT4H1	6200056	1313	0.332	0.0385	No
8	RBM14	5340731 5690315	1486	0.297	0.0399	No
9	MRPL12	3120112	1636	0.270	0.0416	No
10	EPC1	1570050 5290095 6900193	2078	0.205	0.0251	No
11	TRIM28	380292	2399	0.165	0.0138	No
12	TGFB1	1940162	2566	0.146	0.0101	No
13	SUPT5H	4150546	2670	0.135	0.0094	No
14	SPI1	1410397	2778	0.125	0.0081	No
15	EPAS1	5290156	3250	0.090	-0.0141	No
16	DYRK1B	5860706	3519	0.076	-0.0258	No
17	TP53	6130707	3540	0.075	-0.0242	No
18	SMARCD3	4070497	3998	0.058	-0.0468	No
19	HNF4A	6620440	4142	0.053	-0.0526	No
20	ELL3	1770484	4241	0.050	-0.0561	No
21	GLI2	3060632	4406	0.046	-0.0633	No
22	PLAGL1	3190082 6200193	4597	0.041	-0.0721	No
23	FOXO3	2510484 4480451	4783	0.038	-0.0807	No
24	THRAP3	6180309	4835	0.037	-0.0821	No
25	CITED2	5670114 5130088	4868	0.036	-0.0826	No
26	MAP2K3	5570193	5082	0.032	-0.0929	No
27	FOXE1	4810164	5098	0.032	-0.0926	No
28	CREB5	2320368	5656	0.024	-0.1217	No
29	UTF1	5700593	5824	0.023	-0.1299	No
30	IL4	6020537	6057	0.020	-0.1417	No
31	TBX5	2900132 6370484	6316	0.018	-0.1550	No
32	NUFIP1	6350241	6390	0.017	-0.1583	No
33	CDK7	2640451	7752	0.009	-0.2314	No
34	NPAS2	770670	7804	0.009	-0.2339	No
35	RORB	6400035	7857	0.009	-0.2363	No
36	MKL2	5700204	8056	0.008	-0.2467	No
37	NRIP1	3190039	8083	0.008	-0.2478	No
38	FOXF2	1240091	8114	0.008	-0.2492	No
39	GATA4	1410215 2690609	8594	0.006	-0.2748	No
40	HIF1A	5670605	8842	0.005	-0.2879	No
41	ESRRG	4010181	9935	0.002	-0.3468	No
42	EHF	4560088	9976	0.002	-0.3489	No
43	SMARCA1	4230315	10479	0.001	-0.3759	No
44	BMP6	2100128	11286	-0.002	-0.4194	No
45	NCOA6	1780333 6450110	11459	-0.002	-0.4286	No
46	GLI1	4560176	11972	-0.004	-0.4561	No
47	FOXD3	6550156	12005	-0.004	-0.4577	No
48	FOXH1	2060180	12354	-0.005	-0.4763	No
49	PAX8	5050301 5290164	13741	-0.014	-0.5506	No
50	BPTF	940541 4540152	14159	-0.019	-0.5724	No
51	CLOCK	1410070 2940292 3390075	14298	-0.021	-0.5791	No
52	RXRA	3800471	14505	-0.024	-0.5894	No
53	TCF3	5080022	14733	-0.029	-0.6006	No
54	NOTCH4	2450040 6370707	14957	-0.035	-0.6113	No
55	GLIS1	840471	15182	-0.045	-0.6218	No
56	ELF4	4850193	15444	-0.057	-0.6338	No
57	NARG1	5910563 6350095	15804	-0.081	-0.6503	No
58	BCL10	2360397	15829	-0.083	-0.6486	No
59	TRERF1	6370017 6940138	15841	-0.084	-0.6462	No
60	ERCC3	6900008	15992	-0.095	-0.6508	No
61	NSD1	4560519 4780672	16074	-0.102	-0.6515	No
62	PPARGC1B	3290114	16512	-0.152	-0.6697	No
63	MYO6	2190332	16625	-0.169	-0.6696	No
64	MED6	6840500	16755	-0.187	-0.6699	Yes
65	SP1	6590017	16838	-0.205	-0.6669	Yes
66	ARNTL	3170463	16863	-0.209	-0.6607	Yes
67	PHF5A	2690519	16977	-0.228	-0.6586	Yes
68	TNFRSF1A	1090390 6520735	17180	-0.268	-0.6599	Yes
69	ILF2	2900253	17184	-0.270	-0.6504	Yes
70	SMAD2	4200592	17271	-0.295	-0.6444	Yes
71	MNAT1	730292 2350364	17289	-0.300	-0.6346	Yes
72	TCF4	520021	17388	-0.328	-0.6281	Yes
73	HNRPAB	540504	17390	-0.328	-0.6163	Yes
74	MAML1	2760008	17520	-0.360	-0.6104	Yes
75	GTF2H1	2570746 2650148	17587	-0.381	-0.6002	Yes
76	MED12	4920095	17715	-0.430	-0.5916	Yes
77	RSF1	1580097	17746	-0.443	-0.5773	Yes
78	RUNX1	3840711	18014	-0.563	-0.5714	Yes
79	ARHGEF11	1780288	18092	-0.610	-0.5537	Yes
80	CCNH	3190347	18256	-0.727	-0.5364	Yes
81	ATF7IP	2690176 6770021	18287	-0.759	-0.5107	Yes
82	SMARCC1	5080019 7100047	18369	-0.848	-0.4846	Yes
83	XRCC6	2850450 3870528	18427	-0.927	-0.4543	Yes
84	CTCF	5340017	18434	-0.936	-0.4210	Yes
85	ELF1	4780450	18546	-1.372	-0.3777	Yes
86	ILF3	940722 3190647 6520110	18599	-2.087	-0.3055	Yes
87	ATF4	730441 1740195	18600	-2.197	-0.2266	Yes
88	ARID1A	2630022 1690551 4810110	18616	-6.327	0.0000	Yes