Details for gene set CHROMOSOME_ORGANIZATION_AND

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #truncNotch_versus_wtNotch
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#truncNotch_versus_wtNotch
Upregulated in class	wtNotch
GeneSet	CHROMOSOME_ORGANIZATION_AND_BIOGENESIS
Enrichment Score (ES)	-0.67725223
Normalized Enrichment Score (NES)	-1.7332028
Nominal p-value	0.0
FDR q-value	0.10140965
FWER p-Value	0.157

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HDAC5	2370035 6370139	355	0.797	0.0047	No
2	ERCC1	3800010 4590132 4670397	699	0.510	0.0014	No
3	CHMP1A	5550441	1022	0.394	-0.0041	No
4	HMGA1	6580408	1226	0.349	-0.0046	No
5	SMARCD1	3060193 3850184 6400369	1240	0.347	0.0050	No
6	SUPT4H1	6200056	1313	0.332	0.0111	No
7	HTATIP	5360739	1453	0.303	0.0127	No
8	RBM14	5340731 5690315	1486	0.297	0.0198	No
9	HDAC7A	2570278	1494	0.296	0.0283	No
10	SIRT2	630494	2004	0.216	0.0073	No
11	RBBP4	6650528	2043	0.210	0.0116	No
12	MYST3	5270500	2270	0.181	0.0048	No
13	GCN5L2	2340609	2364	0.168	0.0048	No
14	HDAC6	6200446	2379	0.166	0.0090	No
15	HDAC3	4060072	2427	0.161	0.0113	No
16	STAG3	3830112	2466	0.156	0.0139	No
17	AIFM2	360537 3780520 4230138 6130082	2526	0.150	0.0152	No
18	TAF6L	1850056	2588	0.144	0.0163	No
19	MYST1	2190397	2865	0.117	0.0049	No
20	MSH2	6180273	3077	0.102	-0.0035	No
21	TSSK6	2190136	3132	0.099	-0.0034	No
22	TEP1	7040735	3196	0.095	-0.0040	No
23	HDAC10	2850204	3594	0.072	-0.0233	No
24	CHAF1B	3940142	3771	0.066	-0.0308	No
25	CHAF1A	6040647	4123	0.054	-0.0482	No
26	MTA2	5360242 5720494	4353	0.047	-0.0591	No
27	JMJD2A	3610128 4200373	4505	0.044	-0.0660	No
28	TINF2	2360358	4847	0.037	-0.0833	No
29	CDCA5	5670131	5231	0.030	-0.1031	No
30	UBE2N	520369 2900047	5562	0.026	-0.1201	No
31	CENPE	2850022	5930	0.021	-0.1393	No
32	TERT	6660075	6488	0.017	-0.1689	No
33	NAP1L3	6020079	6496	0.016	-0.1688	No
34	SYCP3	5420286	6839	0.014	-0.1868	No
35	BNIP3	3140270	8305	0.007	-0.2657	No
36	HELLS	4560086 4810025	8978	0.005	-0.3019	No
37	SET	6650286	9451	0.004	-0.3273	No
38	PHB	2260739	9622	0.003	-0.3363	No
39	SUV39H2	1450672 6370242	9814	0.003	-0.3466	No
40	DFFB	1770092	10383	0.001	-0.3772	No
41	MAP3K12	2470373 6420162	10996	-0.001	-0.4103	No
42	POT1	5340184	11709	-0.003	-0.4486	No
43	PAM	5290528	11858	-0.003	-0.4565	No
44	MYST4	1400563 2570687 3360458 6840402	11916	-0.004	-0.4595	No
45	NAP1L2	130047	12094	-0.004	-0.4689	No
46	HMGB1	2120670 2350044	12631	-0.006	-0.4977	No
47	TNP1	3120048	13190	-0.009	-0.5275	No
48	NBN	730538 2470619 4780594	13305	-0.010	-0.5334	No
49	CDC23	3190593	13446	-0.011	-0.5406	No
50	HMGA2	2940121 3390647 5130279 6400136	13652	-0.013	-0.5513	No
51	SYCP1	2570010	13740	-0.014	-0.5556	No
52	PPARGC1A	4670040	13963	-0.016	-0.5671	No
53	BPTF	940541 4540152	14159	-0.019	-0.5771	No
54	HDAC8	3440504	14532	-0.025	-0.5964	No
55	NPM2	6040139	14553	-0.025	-0.5967	No
56	DDX11	6590671	14823	-0.032	-0.6103	No
57	SIRT5	110075 2640025	15122	-0.042	-0.6251	No
58	HDAC11	2510242	15228	-0.046	-0.6294	No
59	RPS6KA5	2120563 7040546	15421	-0.055	-0.6381	No
60	PTGES3	2190440 2680524	15425	-0.056	-0.6366	No
61	SMARCA5	6620050	15678	-0.072	-0.6481	No
62	TERF2IP	580010 870364 2190358	15718	-0.075	-0.6479	No
63	SMC4	5910240	15937	-0.091	-0.6570	No
64	SMG6	5820243	15986	-0.095	-0.6567	No
65	CARM1	7040292	15993	-0.096	-0.6542	No
66	MSH3	6770575	15995	-0.096	-0.6514	No
67	RAD50	4050184 6770746	16046	-0.100	-0.6511	No
68	NSD1	4560519 4780672	16074	-0.102	-0.6495	No
69	ASF1A	7050020	16589	-0.163	-0.6724	Yes
70	NAP1L1	2510593 5900215 5090470 450079 4920280	16594	-0.164	-0.6677	Yes
71	SMARCE1	4920465 4390398	16743	-0.186	-0.6701	Yes
72	EZH2	6130605 6380524	16764	-0.189	-0.6655	Yes
73	SIRT1	1190731	16889	-0.212	-0.6659	Yes
74	CENPH	4280097	17065	-0.245	-0.6680	Yes
75	HDAC1	2850670	17220	-0.280	-0.6679	Yes
76	NDC80	4120465	17235	-0.283	-0.6601	Yes
77	ZWINT	6940670	17240	-0.284	-0.6518	Yes
78	TLK2	1170161	17328	-0.312	-0.6472	Yes
79	TERF2	3840044	17372	-0.324	-0.6398	Yes
80	CREBBP	5690035 7040050	17381	-0.327	-0.6305	Yes
81	NAP1L4	1240504	17495	-0.354	-0.6260	Yes
82	ACIN1	3390278 6350377 6620142	17608	-0.389	-0.6204	Yes
83	POLS	5890438	17665	-0.415	-0.6110	Yes
84	RSF1	1580097	17746	-0.443	-0.6020	Yes
85	SUPT16H	1240333	17875	-0.491	-0.5942	Yes
86	MRE11A	3850601 4670332	17933	-0.523	-0.5816	Yes
87	ERCC4	1570619 5720180	17986	-0.547	-0.5680	Yes
88	RFC1	1190673	18057	-0.589	-0.5541	Yes
89	NCAPH	6220435	18140	-0.637	-0.5395	Yes
90	NASP	2260139 2940369 5130707	18205	-0.676	-0.5227	Yes
91	TOP2A	360717	18276	-0.748	-0.5041	Yes
92	ZW10	2900735 3520687	18335	-0.804	-0.4831	Yes
93	EHMT1	5290433 5910086 6620112 6980014	18364	-0.844	-0.4594	Yes
94	SMARCC1	5080019 7100047	18369	-0.848	-0.4342	Yes
95	TLK1	7100605	18412	-0.907	-0.4092	Yes
96	SATB1	5670154	18438	-0.951	-0.3821	Yes
97	HDAC2	4050433	18455	-0.999	-0.3530	Yes
98	SMC1A	3060600 5700148 5890113 6370154	18529	-1.261	-0.3192	Yes
99	ACTL6A	5220543 6290541 2450093 4590332 5270722	18570	-1.652	-0.2719	Yes
100	NUSAP1	940048 3120435	18611	-2.829	-0.1893	Yes
101	ARID1A	2630022 1690551 4810110	18616	-6.327	0.0000	Yes