Details for gene set POSITIVE_REGULATION_OF_RNA_METABOLIC

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS
Enrichment Score (ES)	-0.61462337
Normalized Enrichment Score (NES)	-1.4982431
Nominal p-value	0.0029325513
FDR q-value	0.6495688
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HMGA1	6580408	607	1.183	-0.0015	No
2	SMARCD1	3060193 3850184 6400369	701	1.063	0.0216	No
3	MRPL12	3120112	750	1.030	0.0462	No
4	TP53	6130707	880	0.930	0.0638	No
5	ERCC2	2360750 4060390 6550138	1264	0.677	0.0610	No
6	SCAP	3800706	1575	0.535	0.0584	No
7	SPI1	1410397	1639	0.511	0.0685	No
8	TRIM28	380292	1694	0.488	0.0785	No
9	TGFB1	1940162	1706	0.484	0.0907	No
10	SMARCC1	5080019 7100047	1739	0.476	0.1016	No
11	GTF2H1	2570746 2650148	1894	0.430	0.1046	No
12	PHF5A	2690519	1926	0.422	0.1141	No
13	CCNH	3190347	2311	0.315	0.1017	No
14	RBM14	5340731 5690315	2517	0.260	0.0975	No
15	DYRK1B	5860706	3514	0.107	0.0466	No
16	EPAS1	5290156	3671	0.095	0.0407	No
17	NCOA6	1780333 6450110	3693	0.093	0.0420	No
18	TCF3	5080022	3836	0.085	0.0366	No
19	NARG1	5910563 6350095	3887	0.081	0.0361	No
20	NOTCH4	2450040 6370707	3994	0.077	0.0324	No
21	NPAS2	770670	4268	0.064	0.0193	No
22	IL4	6020537	5032	0.041	-0.0208	No
23	SMARCD3	4070497	5048	0.040	-0.0205	No
24	GLI2	3060632	5094	0.039	-0.0219	No
25	CITED2	5670114 5130088	5161	0.038	-0.0245	No
26	GLIS1	840471	5216	0.037	-0.0264	No
27	ELL3	1770484	5897	0.025	-0.0625	No
28	HNF4A	6620440	5926	0.025	-0.0633	No
29	PLAGL1	3190082 6200193	6141	0.022	-0.0743	No
30	FOXE1	4810164	6293	0.020	-0.0819	No
31	NUFIP1	6350241	6384	0.019	-0.0863	No
32	THRAP3	6180309	6393	0.019	-0.0862	No
33	UTF1	5700593	6516	0.018	-0.0923	No
34	CREB5	2320368	6567	0.018	-0.0945	No
35	SMARCA1	4230315	6901	0.015	-0.1121	No
36	CDK7	2640451	6958	0.015	-0.1147	No
37	TBX5	2900132 6370484	7553	0.011	-0.1464	No
38	ESRRG	4010181	7822	0.010	-0.1606	No
39	MKL2	5700204	9263	0.005	-0.2382	No
40	PAX8	5050301 5290164	9412	0.004	-0.2461	No
41	ARID1A	2630022 1690551 4810110	9720	0.003	-0.2626	No
42	HIF1A	5670605	9787	0.003	-0.2661	No
43	EHF	4560088	10424	0.001	-0.3004	No
44	BPTF	940541 4540152	10617	0.001	-0.3107	No
45	BMP6	2100128	11500	-0.002	-0.3582	No
46	FOXF2	1240091	11898	-0.003	-0.3796	No
47	MAP2K3	5570193	11950	-0.003	-0.3823	No
48	CLOCK	1410070 2940292 3390075	12130	-0.004	-0.3918	No
49	FOXH1	2060180	12169	-0.004	-0.3938	No
50	RORB	6400035	12356	-0.005	-0.4037	No
51	RXRA	3800471	12485	-0.005	-0.4104	No
52	TRERF1	6370017 6940138	12962	-0.008	-0.4359	No
53	GLI1	4560176	13129	-0.009	-0.4446	No
54	FOXD3	6550156	13160	-0.009	-0.4460	No
55	NRIP1	3190039	13626	-0.014	-0.4707	No
56	PPARGC1B	3290114	13767	-0.015	-0.4779	No
57	FOXO3	2510484 4480451	13812	-0.016	-0.4798	No
58	NSD1	4560519 4780672	14165	-0.022	-0.4983	No
59	ELF4	4850193	14976	-0.056	-0.5405	No
60	GATA4	1410215 2690609	15345	-0.085	-0.5581	No
61	RSF1	1580097	15446	-0.095	-0.5610	No
62	TCF4	520021	15471	-0.097	-0.5598	No
63	ERCC3	6900008	15501	-0.101	-0.5587	No
64	SQSTM1	6550056	15821	-0.137	-0.5723	No
65	MYO6	2190332	16607	-0.296	-0.6068	Yes
66	ILF2	2900253	16688	-0.317	-0.6028	Yes
67	SP1	6590017	16789	-0.347	-0.5990	Yes
68	SUPT5H	4150546	16813	-0.353	-0.5909	Yes
69	ATF4	730441 1740195	16819	-0.355	-0.5818	Yes
70	SMAD3	6450671	16940	-0.392	-0.5779	Yes
71	SUPT4H1	6200056	17166	-0.478	-0.5774	Yes
72	MNAT1	730292 2350364	17391	-0.575	-0.5743	Yes
73	SMAD2	4200592	17397	-0.576	-0.5594	Yes
74	MED6	6840500	17488	-0.626	-0.5477	Yes
75	HNRPAB	540504	17599	-0.684	-0.5356	Yes
76	BCL10	2360397	17734	-0.764	-0.5226	Yes
77	XRCC6	2850450 3870528	17862	-0.861	-0.5067	Yes
78	CTCF	5340017	18177	-1.215	-0.4916	Yes
79	ELF1	4780450	18178	-1.217	-0.4594	Yes
80	MED12	4920095	18202	-1.264	-0.4272	Yes
81	ARHGEF11	1780288	18235	-1.336	-0.3937	Yes
82	RUNX1	3840711	18253	-1.370	-0.3584	Yes
83	EPC1	1570050 5290095 6900193	18284	-1.437	-0.3221	Yes
84	ARNTL	3170463	18381	-1.727	-0.2816	Yes
85	MAML1	2760008	18415	-1.816	-0.2354	Yes
86	ILF3	940722 3190647 6520110	18517	-2.351	-0.1787	Yes
87	ATF7IP	2690176 6770021	18577	-2.881	-0.1058	Yes
88	TNFRSF1A	1090390 6520735	18609	-4.080	0.0004	Yes