Details for gene set V$HOXA4

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #truncNotch_versus_absentNotch
Phenotype	phenotype_absentNotch_versus_truncNotch.cls#truncNotch_versus_absentNotch
Upregulated in class	absentNotch
GeneSet	V$HOXA4_Q2
Enrichment Score (ES)	-0.6277224
Normalized Enrichment Score (NES)	-1.6614445
Nominal p-value	0.0
FDR q-value	0.012365819
FWER p-Value	0.124

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EPHB2	1090288 1410377 2100541	237	1.112	0.0185	No
2	PHC2	1430433	730	0.577	0.0081	No
3	ZNF289	3610390 3870711 3940138 5340373	789	0.550	0.0204	No
4	SLC37A4	6400079	1087	0.435	0.0166	No
5	ADRBK1	1340333	1163	0.412	0.0241	No
6	H2AFX	3520082	1349	0.363	0.0243	No
7	CCND1	460524 770309 3120576 6980398	1487	0.331	0.0262	No
8	EIF5A	1500059 5290022 6370026	1588	0.314	0.0296	No
9	CAMK2D	2370685	1639	0.305	0.0355	No
10	PBXIP1	70131	1863	0.264	0.0309	No
11	ETV6	610524	2063	0.234	0.0267	No
12	ARHGEF2	3360577	2394	0.187	0.0141	No
13	CAP1	2650278	2600	0.162	0.0075	No
14	STOML2	1940487	2609	0.160	0.0116	No
15	DNAJA2	2630253 6860358	2730	0.142	0.0091	No
16	COMMD10	3120451	2735	0.141	0.0128	No
17	PRKAB1	7050403	2781	0.136	0.0142	No
18	POU2F1	70577 430373 4850324 5910056	3115	0.103	-0.0010	No
19	HIVEP3	3990551	3241	0.094	-0.0051	No
20	EOMES	2100707	3365	0.086	-0.0094	No
21	CDX2	3850349	3404	0.084	-0.0091	No
22	RWDD3	450519	3492	0.078	-0.0116	No
23	TITF1	3390554 4540292	3642	0.070	-0.0177	No
24	SESN2	2370019	3669	0.069	-0.0172	No
25	OTX2	1190471	3709	0.067	-0.0174	No
26	HOXB7	4540706 4610358	3802	0.063	-0.0206	No
27	TUBB4	5310681	3925	0.059	-0.0255	No
28	TCF1	5390022	4040	0.055	-0.0302	No
29	FOXP2	3520561 4150372 4760524	4343	0.046	-0.0453	No
30	KCNJ8	870494	4530	0.041	-0.0542	No
31	SNX15	1240348 6770082	4598	0.040	-0.0567	No
32	TNNC1	1990575	4604	0.039	-0.0559	No
33	HOXC6	3850133 4920736	4742	0.036	-0.0623	No
34	HOXB8	3710450	5089	0.030	-0.0802	No
35	COL10A1	2360307	5104	0.030	-0.0801	No
36	SOX5	2370576 2900167 3190128 5050528	5174	0.029	-0.0830	No
37	CREB5	2320368	5185	0.028	-0.0828	No
38	PIM1	630047	5187	0.028	-0.0820	No
39	BLR1	1500300 5420017	5246	0.027	-0.0844	No
40	MYO18B	7100670	5448	0.025	-0.0946	No
41	NR2F1	4120528 360402	5470	0.025	-0.0950	No
42	GABARAPL2	610204 3360047	5569	0.023	-0.0997	No
43	A2BP1	2370390 4590593 5550014	5581	0.023	-0.0996	No
44	ST5	3780204	5647	0.023	-0.1025	No
45	HOXC4	1940193	5896	0.020	-0.1154	No
46	ZNF219	5900471	5903	0.020	-0.1152	No
47	GPR150	2570440	5932	0.020	-0.1162	No
48	MYF5	1050739	5948	0.019	-0.1164	No
49	ROBO3	6550408	6526	0.015	-0.1473	No
50	CACNA1S	4730465	6546	0.014	-0.1479	No
51	MAP3K2	380270	6621	0.014	-0.1516	No
52	PNOC	1990114	6654	0.014	-0.1529	No
53	COL17A1	2030672 5130347	6661	0.014	-0.1528	No
54	HMGA2	2940121 3390647 5130279 6400136	6672	0.014	-0.1530	No
55	ZFP36L2	510180	6685	0.014	-0.1533	No
56	RFX5	5420128	6689	0.013	-0.1531	No
57	ANKRD1	4850685	6743	0.013	-0.1556	No
58	SFN	6290301 7510608	6773	0.013	-0.1568	No
59	CHST9	4560092	7028	0.012	-0.1702	No
60	EMCN	5130672	7045	0.011	-0.1708	No
61	GCK	2370273	7318	0.010	-0.1852	No
62	ZIC1	670113	7354	0.010	-0.1869	No
63	RFX4	3710100 5340215	7401	0.010	-0.1891	No
64	PHOX2B	5270075	7442	0.010	-0.1910	No
65	MYH2	2340433	7455	0.009	-0.1914	No
66	PITX2	870537 2690139	7494	0.009	-0.1932	No
67	MPP5	2100148 5220632	7520	0.009	-0.1943	No
68	LRRTM3	4210021	7601	0.009	-0.1983	No
69	HOXC5	1580017	7873	0.008	-0.2128	No
70	ITGBL1	6860204	8039	0.007	-0.2216	No
71	ELK3	460377 1400762 3710497	8163	0.007	-0.2280	No
72	FMO5	4810725 5390086	8216	0.007	-0.2307	No
73	DES	1450341	8232	0.007	-0.2313	No
74	DMD	1740041 3990332	8245	0.007	-0.2318	No
75	BMP4	380113	8286	0.007	-0.2337	No
76	LRRTM1	1690324	8379	0.006	-0.2386	No
77	TECTA	2570372	8421	0.006	-0.2406	No
78	CHST8	1940050	8446	0.006	-0.2417	No
79	GREM1	3940180	8459	0.006	-0.2422	No
80	BBOX1	2030538 2370452	8480	0.006	-0.2431	No
81	M6PR	2480458 3290593 3840324	8597	0.006	-0.2493	No
82	MYBPC2	1980368	8619	0.006	-0.2502	No
83	BDNF	2940128 3520368	8662	0.005	-0.2524	No
84	PIK3R1	4730671	8693	0.005	-0.2539	No
85	NPAS2	770670	8780	0.005	-0.2584	No
86	SLC26A7	1850398 3830377	8781	0.005	-0.2582	No
87	POGZ	870348 7040286	8791	0.005	-0.2586	No
88	BOC	5270348	8913	0.005	-0.2650	No
89	CYBB	3870020	8966	0.004	-0.2677	No
90	CGN	5890139 6370167 6400537	9008	0.004	-0.2698	No
91	PRRX1	4120193 4480390	9063	0.004	-0.2726	No
92	ALK	730008	9070	0.004	-0.2728	No
93	EFNB3	5570594	9117	0.004	-0.2752	No
94	LMO1	3170528	9249	0.004	-0.2822	No
95	FGF3	4230685	9287	0.003	-0.2841	No
96	GRIA1	1340152 3780750 4920440	9373	0.003	-0.2887	No
97	ASB4	2100064 3060059	9911	0.002	-0.3177	No
98	DDX5	940021 2630338 3440148	10260	0.001	-0.3366	No
99	SP7	1050315	10446	0.001	-0.3466	No
100	BMP5	4670048	10581	0.000	-0.3539	No
101	NEK7	4540026	10604	0.000	-0.3551	No
102	ARHGEF7	1690441	11217	-0.001	-0.3882	No
103	ZIC4	1500082	11364	-0.002	-0.3961	No
104	HOXA4	940152	11385	-0.002	-0.3971	No
105	BMPR1B	4560010 4760121 6450161	11430	-0.002	-0.3994	No
106	CRH	3710301	11433	-0.002	-0.3995	No
107	HOXA9	610494 4730040 5130601	11542	-0.002	-0.4053	No
108	ADAMTS17	6510739	11635	-0.003	-0.4102	No
109	EDN2	6760647	11700	-0.003	-0.4136	No
110	NTRK2	6220463	11740	-0.003	-0.4156	No
111	AP1S2	780279 4280707	11866	-0.003	-0.4223	No
112	RBMS3	6110722	11898	-0.003	-0.4239	No
113	BAMBI	6650463	12072	-0.004	-0.4332	No
114	MITF	380056	12085	-0.004	-0.4337	No
115	DSG4	3990605 6400736	12238	-0.004	-0.4419	No
116	FAP	4560019	12255	-0.004	-0.4426	No
117	MYH4	1940102	12457	-0.005	-0.4533	No
118	SYNCRIP	1690195 3140113 4670279	12489	-0.005	-0.4549	No
119	DPP10	4730746	12524	-0.006	-0.4566	No
120	MAMDC2	430471	12676	-0.006	-0.4646	No
121	APEX2	3780044	12748	-0.006	-0.4682	No
122	HOXD4	5900301	12777	-0.007	-0.4696	No
123	MEF2C	670025 780338	12780	-0.007	-0.4695	No
124	NDFIP1	1980402	12963	-0.008	-0.4792	No
125	ACTR3	1400497	13008	-0.008	-0.4813	No
126	PAK3	4210136	13092	-0.008	-0.4856	No
127	ADCYAP1	520086	13233	-0.009	-0.4929	No
128	GPC3	6180735	13268	-0.009	-0.4945	No
129	DSCR1L1	940438	13417	-0.010	-0.5023	No
130	NUP54	940546 2360156 4060278	13537	-0.011	-0.5084	No
131	CLDN14	5340292	13568	-0.011	-0.5097	No
132	FBXO40	2190286 5670253	13791	-0.013	-0.5214	No
133	ERG	50154 1770739	13880	-0.014	-0.5258	No
134	GLMN	5290563 5890239	13972	-0.016	-0.5303	No
135	FHOD1	2680279	14016	-0.016	-0.5321	No
136	STAC2	7100022	14024	-0.016	-0.5321	No
137	SHOX2	3190438 6450059	14086	-0.017	-0.5349	No
138	ELMO2	4540685	14092	-0.017	-0.5347	No
139	RBM4	2360113 5080750	14106	-0.017	-0.5349	No
140	PPARGC1A	4670040	14182	-0.019	-0.5384	No
141	PCDH9	2100136	14192	-0.019	-0.5384	No
142	SSH2	360056	14252	-0.020	-0.5410	No
143	KLF5	3840348	14405	-0.023	-0.5486	No
144	C8A	2190601	14406	-0.023	-0.5480	No
145	TNFSF18	1990458 2850520	14413	-0.023	-0.5477	No
146	DNAJB4	380195 2760372 3940735	14423	-0.023	-0.5475	No
147	SPAG9	580497 2510180 4210685	14429	-0.023	-0.5471	No
148	DUSP6	5910286 7100070	14508	-0.025	-0.5506	No
149	AMD1	6290128	14600	-0.028	-0.5548	No
150	LTBP1	780035 2100746 2760402 3780551 6550184 6860193	14802	-0.035	-0.5647	No
151	STAG2	4540132	14887	-0.038	-0.5682	No
152	ZFP36L1	2510138 4120048	15003	-0.044	-0.5732	No
153	STC1	360161	15685	-0.086	-0.6077	No
154	ZHX1	2100110 2120286	15866	-0.101	-0.6146	No
155	PER1	3290315	15912	-0.106	-0.6140	No
156	NEO1	1990154	15996	-0.116	-0.6153	No
157	GPX1	4150093	16023	-0.119	-0.6133	No
158	CS	5080600	16092	-0.125	-0.6135	No
159	CDC14A	4050132	16158	-0.133	-0.6133	No
160	THRA	6770341 110164 1990600	16193	-0.138	-0.6112	No
161	MBNL2	3450707	16344	-0.161	-0.6148	No
162	NSD1	4560519 4780672	16524	-0.193	-0.6191	No
163	FLI1	3990142	16684	-0.225	-0.6214	Yes
164	CACNB3	2480035 4540184	16743	-0.239	-0.6178	Yes
165	MMP12	4920070	16772	-0.247	-0.6123	Yes
166	DICER1	540286	16808	-0.255	-0.6070	Yes
167	DLX1	360168	16912	-0.279	-0.6048	Yes
168	APOE	4200671	16950	-0.289	-0.5986	Yes
169	NXF1	1570377	17319	-0.391	-0.6076	Yes
170	RPP25	6620048	17402	-0.420	-0.6002	Yes
171	THRAP4	3170041 5050347	17515	-0.459	-0.5933	Yes
172	TOB1	4150138	17941	-0.646	-0.5981	Yes
173	RPA3	5700136	17986	-0.672	-0.5816	Yes
174	CYLD	6590079	18171	-0.808	-0.5688	Yes
175	SAV1	5420541	18335	-0.985	-0.5499	Yes
176	CNN3	6110020	18519	-1.472	-0.5183	Yes
177	EIF4G2	3800575 6860184	18522	-1.497	-0.4762	Yes
178	SMOC1	840039	18549	-1.657	-0.4309	Yes
179	PTPN22	1690647 7100239	18606	-2.981	-0.3499	Yes
180	MMP14	670079	18610	-3.170	-0.2608	Yes
181	ATP2A3	130440 2190451	18612	-3.349	-0.1664	Yes
182	ARID1A	2630022 1690551 4810110	18616	-5.910	-0.0000	Yes