Details for gene set V$SMAD3

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #absentNotch_versus_wtNotch_repos
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#absentNotch_versus_wtNotch_repos
Upregulated in class	absentNotch
GeneSet	V$SMAD3_Q6
Enrichment Score (ES)	0.597551
Normalized Enrichment Score (NES)	1.4707763
Nominal p-value	0.006779661
FDR q-value	0.35890836
FWER p-Value	0.998

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CHDH	2570711 6200338	11	3.272	0.1382	Yes
2	HMGB1	2120670 2350044	80	1.465	0.1966	Yes
3	IL17RB	6590215	134	1.302	0.2490	Yes
4	GADD45G	2510142	166	1.064	0.2925	Yes
5	PPP3CB	6020156	211	0.891	0.3279	Yes
6	H1F0	1400408	230	0.849	0.3629	Yes
7	FOXP1	6510433	308	0.705	0.3886	Yes
8	C1QB	5910292	328	0.670	0.4160	Yes
9	ANKMY2	780600 2230440	332	0.666	0.4441	Yes
10	WNT8B	4560301	336	0.663	0.4721	Yes
11	ASB2	4760168	473	0.515	0.4866	Yes
12	ACTN2	4200435	500	0.495	0.5062	Yes
13	KCTD15	2810735	604	0.426	0.5187	Yes
14	EMID1	3190079 5130152	706	0.376	0.5292	Yes
15	THBS2	2850136	717	0.371	0.5444	Yes
16	KLF7	50390	806	0.338	0.5539	Yes
17	OLIG3	1050603	852	0.326	0.5653	Yes
18	NLGN2	5900592	925	0.305	0.5744	Yes
19	RAI1	110377 5340670	1039	0.275	0.5799	Yes
20	CACNB3	2480035 4540184	1191	0.243	0.5820	Yes
21	SAV1	5420541	1198	0.241	0.5919	Yes
22	NDUFS2	4850020 6200402	1272	0.226	0.5976	Yes
23	PTPN7	3450110	1539	0.180	0.5908	No
24	CDKN1A	4050088 6400706	1749	0.153	0.5859	No
25	CSDA	2470092 3060053 4780056	1843	0.142	0.5869	No
26	NYX	4120239	2234	0.106	0.5703	No
27	DOCK9	5080037	2559	0.084	0.5563	No
28	ZMYND17	840500	2824	0.069	0.5449	No
29	CLTC	6590458	3069	0.057	0.5341	No
30	ACVR1	6840671	3108	0.056	0.5344	No
31	LOX	5340372	3169	0.053	0.5334	No
32	CACNB2	1500095 7330707	3454	0.043	0.5199	No
33	TOP1	770471 4060632 6650324	3620	0.039	0.5126	No
34	LAMC2	450692 2680041 4200059 4670148	3696	0.037	0.5101	No
35	DDEF1	1170411 4070465	3755	0.036	0.5084	No
36	APBB2	5130403	4167	0.028	0.4874	No
37	CSF3	2230193 6660707	4194	0.027	0.4871	No
38	PABPC5	2320408	4209	0.027	0.4875	No
39	CDK5	940348	4384	0.025	0.4791	No
40	TGFB2	4920292	4792	0.020	0.4579	No
41	PVRL1	2570167 5220519 5890500 3190309	4868	0.019	0.4546	No
42	EYA4	5360286	5062	0.017	0.4449	No
43	ST5	3780204	5299	0.015	0.4328	No
44	DUSP3	1240129 6840215	5357	0.015	0.4303	No
45	CDK5R2	3800110	5409	0.015	0.4282	No
46	SMAD6	870504	5477	0.014	0.4251	No
47	PAK3	4210136	5641	0.013	0.4169	No
48	GABRE	4780020	5844	0.012	0.4064	No
49	LRP2	1400204 3290706	6016	0.011	0.3976	No
50	S100A16	2510546	6135	0.010	0.3917	No
51	NXPH4	3830500	6241	0.010	0.3864	No
52	ESRRG	4010181	6290	0.010	0.3842	No
53	SMPX	6590440	6400	0.009	0.3787	No
54	MEIS1	1400575	6447	0.009	0.3766	No
55	FOXB1	4920270 5290463	6562	0.008	0.3708	No
56	POU4F1	2260315	6650	0.008	0.3664	No
57	JUB	5860711 5900500	6732	0.008	0.3623	No
58	GPC3	6180735	6767	0.008	0.3608	No
59	CHD2	4070039	6907	0.007	0.3536	No
60	C1QTNF5	1690402	7258	0.006	0.3349	No
61	RIMS1	5670022	7498	0.005	0.3221	No
62	S100A14	450400	7599	0.005	0.3169	No
63	TLX1	2630162	7826	0.004	0.3048	No
64	SSBP3	870717 1050377 7040551	7845	0.004	0.3040	No
65	TIMP4	6110433	7884	0.004	0.3021	No
66	CHST9	4560092	8002	0.004	0.2960	No
67	SCRG1	2060541	8217	0.003	0.2845	No
68	NRXN3	1400546 3360471	8345	0.003	0.2777	No
69	ANXA9	1190195	8410	0.003	0.2744	No
70	SKIL	1090364	8417	0.003	0.2741	No
71	ITIH3	3830551	8898	0.001	0.2482	No
72	TNRC4	4050156	8906	0.001	0.2478	No
73	LIN28	6590672	9004	0.001	0.2426	No
74	PFKFB1	2370128	9121	0.001	0.2364	No
75	STX16	70315	9143	0.001	0.2353	No
76	FAP	4560019	9179	0.000	0.2334	No
77	FGF7	5390484	9359	0.000	0.2237	No
78	AGER	5860538 5910180	9390	-0.000	0.2221	No
79	PITX3	3130162	9608	-0.001	0.2103	No
80	EYA1	1450278 5220390	9830	-0.001	0.1984	No
81	SYT7	2450528 3390500 3610687	10282	-0.002	0.1741	No
82	EIF3S1	6130368 6770044	10450	-0.003	0.1651	No
83	CRABP2	6940725	10460	-0.003	0.1648	No
84	ELOVL1	2450019 4760138 5340685	10489	-0.003	0.1634	No
85	HES7	4610239	10627	-0.003	0.1561	No
86	BHLHB3	3450438	10762	-0.004	0.1490	No
87	BAMBI	6650463	10787	-0.004	0.1479	No
88	FZD1	3140215	10800	-0.004	0.1474	No
89	PAX3	50551	10837	-0.004	0.1456	No
90	ATP6V1E2	6840706	10967	-0.004	0.1388	No
91	NOS3	630152 670465	11056	-0.005	0.1342	No
92	MYT1	6770524	11180	-0.005	0.1278	No
93	RFX4	3710100 5340215	11260	-0.005	0.1237	No
94	NIN	3450576 5080048	11301	-0.005	0.1218	No
95	CHRM1	4280619	11355	-0.006	0.1192	No
96	B3GALT2	430136	11398	-0.006	0.1171	No
97	EDN1	1770047	11444	-0.006	0.1149	No
98	IRX5	2630494	11568	-0.006	0.1085	No
99	TEAD3	2320142	11675	-0.007	0.1031	No
100	CABP2	840142	11677	-0.007	0.1033	No
101	MRC2	110369 2480520	11684	-0.007	0.1033	No
102	HCRT	2970463	11709	-0.007	0.1023	No
103	NR2F2	3170609 3310577	12061	-0.008	0.0836	No
104	LHX6	2360731 3360397	12142	-0.009	0.0797	No
105	RARB	430139 1410138	12215	-0.009	0.0761	No
106	FGF11	840292	12253	-0.009	0.0745	No
107	PURA	3870156	12399	-0.010	0.0671	No
108	RNF12	6860717	12490	-0.010	0.0626	No
109	PHF15	6550066 6860673	12731	-0.012	0.0501	No
110	TITF1	3390554 4540292	12732	-0.012	0.0506	No
111	NNAT	4920053 5130253	12739	-0.012	0.0508	No
112	CLDN16	1850286	12786	-0.012	0.0488	No
113	FGF23	510746	12971	-0.013	0.0394	No
114	COL11A2	5130341	13014	-0.013	0.0377	No
115	GRIN2D	6620372	13030	-0.014	0.0374	No
116	HOXC4	1940193	13037	-0.014	0.0377	No
117	POU3F4	870274	13143	-0.014	0.0326	No
118	FGF14	2630390 3520075 6770048	13221	-0.015	0.0290	No
119	LTBP1	780035 2100746 2760402 3780551 6550184 6860193	13296	-0.015	0.0257	No
120	DLX3	3190497	13310	-0.016	0.0256	No
121	ARHGEF19	940102	13316	-0.016	0.0260	No
122	CNTFR	4480092 6200064	13344	-0.016	0.0252	No
123	MFAP4	520181	13711	-0.019	0.0062	No
124	BTBD3	1980041 2510577 3190053 4200746	13856	-0.021	-0.0007	No
125	HAPLN2	2900647	14129	-0.024	-0.0144	No
126	PDE4D	2470528 6660014	14130	-0.024	-0.0134	No
127	SMTN	670563 1190438	14218	-0.025	-0.0171	No
128	BMPR2	5340066 6960328	14260	-0.026	-0.0182	No
129	ZADH2	520438	14276	-0.026	-0.0179	No
130	KCNJ8	870494	14277	-0.026	-0.0168	No
131	ZRANB1	510373 4540278	14313	-0.026	-0.0176	No
132	TAF6L	1850056	14358	-0.027	-0.0188	No
133	CPNE6	6520338	14480	-0.029	-0.0241	No
134	RFX5	5420128	14500	-0.030	-0.0239	No
135	RUSC1	6450093 6980575	14563	-0.031	-0.0260	No
136	JMJD1C	940575 2120025	14568	-0.031	-0.0249	No
137	ERG	50154 1770739	14571	-0.031	-0.0237	No
138	JARID2	6290538	14682	-0.033	-0.0282	No
139	MTMR4	4540524	14995	-0.040	-0.0434	No
140	NTRK3	4050687 4070167 4610026 6100484	15238	-0.047	-0.0546	No
141	CRAT	540020 2060364 3520148	15266	-0.048	-0.0540	No
142	HOXC6	3850133 4920736	15450	-0.055	-0.0616	No
143	PAX2	6040270 7000133	15775	-0.068	-0.0763	No
144	MORF4L2	6450133	15852	-0.072	-0.0773	No
145	WNT10B	510050	16005	-0.079	-0.0822	No
146	ITGAE	4210632 4670239 5340253 5420746 5690154 5700685 6770154	16044	-0.082	-0.0808	No
147	SKP1A	2450102	16293	-0.097	-0.0901	No
148	SIPA1	5220687	16402	-0.105	-0.0915	No
149	TGIF2	3840364 4050520	16656	-0.123	-0.1000	No
150	SLC4A2	2690114	16738	-0.131	-0.0988	No
151	BZW2	940079	16924	-0.149	-0.1026	No
152	ALDH4A1	2450450	16941	-0.150	-0.0970	No
153	PTPN6	4230128	17084	-0.167	-0.0976	No
154	BAZ2A	730184	17253	-0.194	-0.0985	No
155	AGPAT4	6040079	17298	-0.203	-0.0923	No
156	HOXB1	2120110	17460	-0.230	-0.0913	No
157	ZHX2	2900452	17500	-0.238	-0.0833	No
158	SLC6A9	2470520	17582	-0.254	-0.0769	No
159	PIK3R3	1770333	17613	-0.260	-0.0675	No
160	DCTN2	540471 3780717	18041	-0.400	-0.0736	No
161	ARID1A	2630022 1690551 4810110	18090	-0.417	-0.0586	No
162	PDLIM2	2450603 2810551 3830040 4670164	18357	-0.653	-0.0453	No
163	OTX2	1190471	18377	-0.689	-0.0170	No
164	BCL9L	6940053	18389	-0.706	0.0123	No