DatasetSet_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch_repos
Phenotypephenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in classabsentNotch
GeneSetREGULATION_OF_RNA_METABOLIC_PROCESS
Enrichment Score (ES)0.5571976
Normalized Enrichment Score (NES)1.5652778
Nominal p-value0.0
FDR q-value0.30340105
FWER p-Value0.942
Table: GSEA Results Summary



Fig 1: Enrichment plot: REGULATION_OF_RNA_METABOLIC_PROCESS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ARID1A2630022 1690551 481011005.9100.0644Yes
2EDF11660035 2640161382.0810.0850Yes
3KLF93840022392.0810.1077Yes
4ILF3940722 3190647 6520110402.0790.1303Yes
5MDM23450053 5080138412.0780.1530Yes
6PABPC12650180 2690253 6020632 1990270581.7600.1713Yes
7XRCC62850450 3870528651.6820.1893Yes
8UHRF11410273 1660242781.5950.2060Yes
9ATF4730441 1740195801.5820.2232Yes
10ATF7IP2690176 6770021871.5390.2396Yes
11HMGB12120670 2350044981.4710.2551Yes
12TNFRSF1A1090390 65207351001.4640.2710Yes
13TCF123610324 70001561221.3840.2849Yes
14HDAC240504331531.2730.2971Yes
15CTCF53400171611.2430.3103Yes
16BCL69401001811.1700.3220Yes
17ZEB168401622271.0640.3311Yes
18ELF147804502491.0320.3412Yes
19HTATSF11100262661.0050.3513Yes
20PRKAR1A34503692900.9740.3606Yes
21NFATC350505203460.9100.3675Yes
22NFYB18500533900.8540.3745Yes
23SMAD456705193920.8520.3837Yes
24RBAK17700084190.8300.3913Yes
25SMARCC15080019 71000474710.7860.3971Yes
26MED668405004780.7780.4052Yes
27SIN3A21901215690.7080.4080Yes
28TCEB111706196320.6690.4119Yes
29BRD72120068 62007466390.6640.4188Yes
30RUNX138407116970.6340.4226Yes
31LITAF69406717020.6320.4293Yes
32IKBKAP1740746 31203647250.6220.4348Yes
33HNRPAB5405047400.6120.4407Yes
34CCNH31903477640.6030.4461Yes
35SRPK14501107770.5960.4519Yes
36KLF7503907870.5910.4578Yes
37DNMT122600978150.5760.4626Yes
38MNAT1730292 23503648230.5720.4685Yes
39ARHGEF1117802888470.5630.4734Yes
40CSDA2470092 3060053 47800568680.5560.4783Yes
41MAML127600088760.5530.4840Yes
42MED1249200959030.5420.4884Yes
43CREBBP5690035 70400509090.5410.4941Yes
44SMARCE14920465 43903989180.5380.4995Yes
45EZH26130605 63805249740.5100.5020Yes
46E2F1536009310000.5030.5061Yes
47RB1590033810140.4970.5108Yes
48RYBP6074610530.4810.5140Yes
49CDC2L21400671 529016810750.4700.5179Yes
50VEZF1690059210830.4670.5226Yes
51PAIP1387057611940.4270.5213Yes
52LIMD1248014212090.4220.5251Yes
53TFDP1198011212320.4150.5284Yes
54TCEB3589015613050.3870.5287Yes
55TCF73800736 539018113450.3740.5306Yes
56NFYA586036813590.3720.5340Yes
57POLR2K387040013600.3720.5380Yes
58MYO6219033214160.3550.5389Yes
59ILF2290025314520.3470.5407Yes
60ING4510632 2340619 2850176 529070614800.3400.5430Yes
61TCF452002115640.3200.5419Yes
62SMAD2420059215810.3120.5444Yes
63RSF1158009715910.3090.5473Yes
64IRF2539004415940.3090.5506Yes
65SP1659001716370.2960.5515Yes
66JARID1B473049416750.2860.5526Yes
67TBX19527039017680.2640.5504Yes
68CHD1459004817910.2590.5520Yes
69GFI173018018000.2570.5544Yes
70SIRT1119073118010.2570.5572Yes
71LDB1527060118540.2440.5570No
72PHF12870400 313068719440.2220.5546No
73ARNTL317046319930.2110.5542No
74ING2485049720260.2050.5547No
75NRF1265019520860.1940.5536No
76NSD14560519 478067220920.1930.5554No
77MECP2194045022510.1630.5485No
78PPARGC1B329011422690.1610.5494No
79RNF4580286 140015223450.1490.5469No
80STAT3460040 371034124340.1370.5435No
81ZNF148642040325630.1220.5379No
82PHF5A269051926450.1130.5347No
83BRIP1105042726980.1070.5330No
84ZHX12100110 212028627500.1010.5313No
85CHD2407003928670.0920.5259No
86SNW1401073628710.0910.5268No
87TRAPPC24210301 586060128950.0890.5265No
88RUVBL14280239 508027331470.0700.5135No
89GATA41410215 269060931590.0690.5137No
90GABPB26130450 705073532020.0670.5121No
91SMARCD2383061932250.0650.5116No
92BRD81170463 2900075 4050397 659033232290.0650.5121No
93ZFP161110546 481019532320.0650.5127No
94FUSIP1520082 539011432800.0610.5108No
95MRPL12312011233030.0600.5103No
96ATF72030138 476044033100.0600.5106No
97BCL10236039733280.0590.5103No
98MTF1520427 234036433580.0570.5093No
99CITED25670114 513008833590.0570.5099No
100PAWR5130546 633070633790.0560.5095No
101NRIP1319003933880.0550.5097No
102MYC380541 467017034860.0500.5049No
103KLF41850022 3830239 557075034930.0500.5051No
104PREB70746 336072536000.0440.4998No
105TCF7L22190348 522011337590.0370.4916No
106SOX12178003737790.0360.4909No
107ORC2L1990470 651001938210.0350.4890No
108PPARG1990168 2680603 613063238310.0340.4889No
109GATA6177001038370.0340.4890No
110TNF665060338800.0330.4871No
111EID1662013239310.0310.4847No
112JMY336024239810.0290.4823No
113ABL11050593 2030050 401011440280.0280.4801No
114BPTF940541 454015241110.0250.4759No
115NR1D22360014 454001441470.0240.4742No
116LRRFIP1870259 1050204 276037741680.0240.4734No
117FST111060041830.0240.4729No
118VPS4B344033242050.0230.4720No
119CREM840156 6380438 6660041 666016842750.0210.4684No
120NR6A1401034743570.0200.4642No
121STAT2378051944100.0190.4616No
122GLIS184047144930.0180.4573No
123NR0B1651075045890.0160.4523No
124FOXP3940707 185069246080.0160.4515No
125HSF4461027346210.0160.4510No
126FOXD3655015647900.0140.4419No
127SAP18361009248150.0140.4408No
128HMGB2264060348870.0130.4370No
129UBP1602070749510.0120.4337No
130SOX211050110 4670041 666033850420.0110.4289No
131SMARCA1423031551940.0100.4207No
132SP3384033852330.0100.4188No
133RORB640003553040.0090.4150No
134NOTCH2257039754260.0090.4085No
135SNAI2210051954570.0080.4069No
136NEUROD2529009755730.0080.4007No
137ESRRG401018156620.0070.3960No
138BCOR1660452 394005358630.0070.3851No
139POU4F22120195 257002259010.0060.3832No
140TNP1312004859090.0060.3828No
141CNBP257016159320.0060.3817No
142PAX85050301 529016460320.0060.3764No
143NR2C2610009761740.0050.3687No
144FOXF2124009161990.0050.3674No
145DR1586075063330.0050.3602No
146FOSB194014263710.0040.3582No
147FOXE1481016464440.0040.3543No
148HNF4G572045166230.0040.3446No
149CITED1235067066910.0030.3410No
150MYF6269057667220.0030.3394No
151MKL2570020467310.0030.3390No
152HNRPF67013867450.0030.3383No
153ZNF3567015667640.0030.3374No
154TBX52900132 637048469080.0030.3296No
155KLF121660095 4810288 5340546 652028671610.0020.3158No
156GLI1456017671680.0020.3155No
157PBX1666030172500.0020.3111No
158SREBF1478033373920.0010.3034No
159BMP6210012876490.0010.2893No
160CRK1230162 478012876960.0010.2868No
161TCEAL187057777460.0000.2842No
162TBX222100301 567046377880.0000.2819No
163KLF10485005679350.0000.2739No
164BRCA147806697993-0.0000.2708No
165NR2F23170609 33105778001-0.0000.2704No
166RXRA38004718027-0.0000.2690No
167SP438501768094-0.0000.2654No
168CRABP269407258120-0.0000.2641No
169REST15004718229-0.0010.2582No
170TCF1516904008314-0.0010.2536No
171NANOG2230152 3140114 47306328323-0.0010.2532No
172TFAM3190164 68401958342-0.0010.2522No
173ZFPM24600728343-0.0010.2522No
174ELL317704848389-0.0010.2497No
175NFATC270450 5400978399-0.0010.2493No
176YY161304518513-0.0010.2431No
177SP10034406328726-0.0020.2315No
178RARB430139 14101389016-0.0030.2157No
179TRERF16370017 69401389032-0.0030.2149No
180NFYC14007469181-0.0030.2068No
181SMARCAL114502539279-0.0030.2016No
182KLF1168407399384-0.0040.1959No
183TEAD41850239 63805199396-0.0040.1954No
184NCOA61780333 64501109535-0.0040.1878No
185EHF45600889536-0.0040.1879No
186SMARCA566200509652-0.0040.1816No
187PRDM13170347 35203019655-0.0040.1816No
188HELLS4560086 48100259667-0.0040.1810No
189LMX1B12605619744-0.0050.1769No
190NPAS27706709836-0.0050.1720No
191TIAL14150048 65106059938-0.0050.1665No
192POU6F2527045110101-0.0060.1577No
193ELP4123057610114-0.0060.1571No
194SP2640002610163-0.0060.1546No
195NR0B2247069210243-0.0060.1503No
196FOSL143002110299-0.0060.1474No
197RPL6604073510422-0.0070.1407No
198FOXH1206018010511-0.0070.1360No
199MYOD1123073110549-0.0070.1341No
200KCNIP3629005010717-0.0080.1250No
201HOXC5158001710743-0.0080.1237No
202TBX2199056310868-0.0080.1170No
203FOXN1473007510893-0.0080.1158No
204SCRT1676073610966-0.0090.1120No
205CDK7264045111027-0.0090.1088No
206SOX18232008611053-0.0090.1075No
207PITX2870537 269013911122-0.0090.1039No
208POU4F1226031511314-0.0100.0935No
209NOTCH42450040 637070711342-0.0100.0922No
210TCFL5219001911424-0.0110.0878No
211JMJD1C940575 212002511572-0.0110.0799No
212HIF1A567060511601-0.0120.0785No
213THRAP3618030911717-0.0120.0724No
214HMGA22940121 3390647 5130279 640013611944-0.0140.0601No
215PHF21A61001412113-0.0150.0511No
216NUFIP1635024112136-0.0150.0500No
217HOXD13226060312149-0.0150.0496No
218BMP2662068712217-0.0150.0461No
219PPARD11013112336-0.0170.0398No
220HIC1265014212371-0.0170.0381No
221GLI2306063212387-0.0170.0375No
222FOSL2870044 1230427 652043312423-0.0170.0357No
223ATRX2340039 3610132 421037312464-0.0180.0337No
224PTF1A645037712520-0.0180.0309No
225POU2F3203060112543-0.0180.0299No
226CALR51044612556-0.0180.0294No
227AHR456067112631-0.0190.0256No
228TBX3257067212640-0.0190.0254No
229MYF5105073912668-0.0190.0241No
230ZBTB32590039712692-0.0200.0231No
231ARID4A520156 105070712707-0.0200.0225No
232SOX302690725 473030912813-0.0210.0170No
233GFI1B457013112936-0.0220.0105No
234ARID5B11040312946-0.0220.0103No
235UTF1570059312950-0.0220.0104No
236MAFA7051913034-0.0230.0061No
237GCM1651068713038-0.0230.0062No
238ELAVL236018113069-0.0240.0048No
239ZBTB16329002213124-0.0240.0021No
240MYST2454049413230-0.025-0.0034No
241ELF21690014 2480132 3060180 319050413247-0.026-0.0040No
242IL4602053713283-0.026-0.0056No
243ESR2622013813307-0.027-0.0066No
244FOXO32510484 448045113380-0.028-0.0102No
245CREB5232036813431-0.028-0.0126No
246MDM44070504 478000813496-0.030-0.0158No
247HDAC8344050413547-0.031-0.0182No
248MLLT6387016813574-0.031-0.0193No
249NME2219067213654-0.033-0.0233No
250NDUFA13622002113688-0.033-0.0247No
251PBX31300424 3710577 618057513801-0.035-0.0305No
252FOS185031513810-0.035-0.0305No
253RPS6KA52120563 704054613819-0.035-0.0306No
254HOXC63850133 492073613874-0.036-0.0331No
255POU5F1450739 456060513904-0.037-0.0343No
256ERF110551 177027813929-0.038-0.0352No
257GTF2H12570746 265014814039-0.040-0.0408No
258PLAGL13190082 620019314148-0.043-0.0462No
259RNF1450402 1340041 637068714225-0.045-0.0499No
260SMARCD3407049714286-0.047-0.0527No
261TBX102690156 264008614309-0.047-0.0533No
262BLZF163008814327-0.048-0.0538No
263POLR3C694054614341-0.048-0.0539No
264TCF3508002214375-0.049-0.0552No
265NARG15910563 635009514397-0.050-0.0558No
266IRF861016114446-0.051-0.0579No
267SOD2141005314581-0.055-0.0646No
268GCN5L2234060914766-0.061-0.0740No
269NKX2-5539043814777-0.062-0.0739No
270SREBF2339069214798-0.063-0.0743No
271NFX145050414830-0.064-0.0753No
272TBX21527059414880-0.066-0.0773No
273UBN1590019514899-0.067-0.0776No
274ERCC3690000814917-0.068-0.0777No
275RBPJ2360164 5550136 572040214993-0.071-0.0811No
276DYRK1B586070615024-0.073-0.0819No
277MDFI620004115168-0.081-0.0889No
278ELF4485019315183-0.082-0.0888No
279ZHX2290045215222-0.084-0.0899No
280ZHX346061515247-0.085-0.0903No
281CLOCK1410070 2940292 339007515257-0.086-0.0899No
282HCLS1710030915264-0.087-0.0892No
283DRAP1294014215304-0.089-0.0904No
284SIRT5110075 264002515327-0.090-0.0906No
285NEUROG138034115341-0.091-0.0904No
286PFDN5460020 423063215352-0.092-0.0899No
287MZF1780411 4780102 655028615374-0.094-0.0900No
288EPAS1529015615387-0.094-0.0897No
289DBP420027015413-0.096-0.0900No
290HIRA4480609 527016715548-0.108-0.0961No
291HNF4A662044015585-0.111-0.0969No
292GATA1640006815661-0.118-0.0997No
293TADA3L4210070 5720088 666033315675-0.119-0.0991No
294MYBBP1A110592 2570435 290071115683-0.120-0.0982No
295TARBP260369 380026 476037715732-0.127-0.0995No
296HDAC10285020415749-0.128-0.0990No
297UBTF4210450 684040315790-0.131-0.0997No
298DEK1050451 456003715814-0.134-0.0995No
299EPC11570050 5290095 690019315826-0.135-0.0987No
300TRIM273710575 478011215862-0.139-0.0991No
301TGFB1194016215875-0.140-0.0982No
302TWIST1513061915934-0.148-0.0997No
303MAP2K3557019315974-0.155-0.1002No
304SPI1141039715991-0.158-0.0994No
305TAF6L185005616104-0.171-0.1036No
306PA2G4203046316206-0.185-0.1071No
307TRIM2838029216232-0.189-0.1064No
308DDIT378037316274-0.194-0.1066No
309ZMYND11630181 2570019 4850138 536004016370-0.211-0.1095No
310NR5A17070716380-0.212-0.1077No
311CXXC1630170 394013616409-0.216-0.1069No
312TCF19620015216518-0.230-0.1103No
313HSBP1690068716658-0.249-0.1152No
314MXD4481011316709-0.257-0.1151No
315VPS72245018116728-0.260-0.1132No
316RBM145340731 569031516739-0.262-0.1109No
317ELP3344043816825-0.277-0.1126No
318IRF7157060516875-0.286-0.1121No
319JUNB423004816903-0.291-0.1104No
320NFE2371037316956-0.301-0.1100No
321SUPT5H415054616987-0.306-0.1083No
322SUPT4H1620005617021-0.312-0.1067No
323HTATIP2312046517045-0.318-0.1045No
324SQSTM1655005617055-0.319-0.1015No
325DAXX401064717183-0.346-0.1047No
326NFKB2232067017210-0.350-0.1023No
327SCAP380070617258-0.361-0.1010No
328ATF5567068517284-0.368-0.0983No
329PBX4637008617353-0.384-0.0979No
330RPS6KA4219052417372-0.388-0.0946No
331ARID5A245013317414-0.400-0.0925No
332PQBP1652060317446-0.409-0.0898No
333SUFU665018117447-0.409-0.0853No
334UBE2V1247009317454-0.412-0.0812No
335CHD45420059 6130338 638071717466-0.415-0.0773No
336SMAD3645067117586-0.454-0.0788No
337ABCA2505003917687-0.486-0.0790No
338TP53613070717702-0.490-0.0744No
339ZNF76385002017708-0.492-0.0694No
340CHMP1A555044117782-0.523-0.0676No
341CARM1704029217787-0.527-0.0621No
342SMARCD13060193 3850184 640036917805-0.536-0.0572No
343SUPT3H665013917915-0.594-0.0567No
344ERCC22360750 4060390 655013817996-0.639-0.0541No
345TWIST2676043318015-0.652-0.0480No
346E2F63120133 3850332 407032418046-0.680-0.0422No
347SMARCB1586049418105-0.742-0.0373No
348HMGA1658040818109-0.743-0.0294No
349MEN14850300 590067118216-0.852-0.0259No
350NFATC1510400 2320348 4050600 6180161 6290136 662008618267-0.926-0.0186No
351PEX1452060318274-0.929-0.0088No
352HDAC52370035 637013918289-0.9480.0008No
353ENO1534012818494-1.5660.0067No
Table: GSEA details [plain text format]



Fig 2: REGULATION_OF_RNA_METABOLIC_PROCESS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REGULATION_OF_RNA_METABOLIC_PROCESS: Random ES distribution   
Gene set null distribution of ES for REGULATION_OF_RNA_METABOLIC_PROCESS