Details for gene set POSITIVE_REGULATION_OF_TRANSCRIPTION__DNA

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch_repos
Phenotype	phenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in class	absentNotch
GeneSet	POSITIVE_REGULATION_OF_TRANSCRIPTION__DNA_DEPENDENT
Enrichment Score (ES)	0.6821518
Normalized Enrichment Score (NES)	1.6722245
Nominal p-value	0.0
FDR q-value	0.32598528
FWER p-Value	0.253

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ARID1A	2630022 1690551 4810110	0	5.910	0.1886	Yes
2	ILF3	940722 3190647 6520110	40	2.079	0.2528	Yes
3	XRCC6	2850450 3870528	65	1.682	0.3051	Yes
4	ATF4	730441 1740195	80	1.582	0.3549	Yes
5	ATF7IP	2690176 6770021	87	1.539	0.4036	Yes
6	TNFRSF1A	1090390 6520735	100	1.464	0.4497	Yes
7	CTCF	5340017	161	1.243	0.4861	Yes
8	ELF1	4780450	249	1.032	0.5143	Yes
9	SMARCC1	5080019 7100047	471	0.786	0.5275	Yes
10	MED6	6840500	478	0.778	0.5520	Yes
11	RUNX1	3840711	697	0.634	0.5605	Yes
12	HNRPAB	540504	740	0.612	0.5777	Yes
13	CCNH	3190347	764	0.603	0.5957	Yes
14	MNAT1	730292 2350364	823	0.572	0.6108	Yes
15	ARHGEF11	1780288	847	0.563	0.6276	Yes
16	MAML1	2760008	876	0.553	0.6437	Yes
17	MED12	4920095	903	0.542	0.6596	Yes
18	MYO6	2190332	1416	0.355	0.6433	Yes
19	ILF2	2900253	1452	0.347	0.6525	Yes
20	TCF4	520021	1564	0.320	0.6567	Yes
21	SMAD2	4200592	1581	0.312	0.6658	Yes
22	RSF1	1580097	1591	0.309	0.6752	Yes
23	SP1	6590017	1637	0.296	0.6822	Yes
24	ARNTL	3170463	1993	0.211	0.6697	No
25	NSD1	4560519 4780672	2092	0.193	0.6706	No
26	PPARGC1B	3290114	2269	0.161	0.6662	No
27	PHF5A	2690519	2645	0.113	0.6496	No
28	GATA4	1410215 2690609	3159	0.069	0.6241	No
29	MRPL12	3120112	3303	0.060	0.6183	No
30	BCL10	2360397	3328	0.059	0.6189	No
31	CITED2	5670114 5130088	3359	0.057	0.6191	No
32	NRIP1	3190039	3388	0.055	0.6193	No
33	BPTF	940541 4540152	4111	0.025	0.5812	No
34	GLIS1	840471	4493	0.018	0.5612	No
35	FOXD3	6550156	4790	0.014	0.5456	No
36	SMARCA1	4230315	5194	0.010	0.5242	No
37	RORB	6400035	5304	0.009	0.5186	No
38	ESRRG	4010181	5662	0.007	0.4996	No
39	PAX8	5050301 5290164	6032	0.006	0.4799	No
40	FOXF2	1240091	6199	0.005	0.4711	No
41	FOXE1	4810164	6444	0.004	0.4580	No
42	MKL2	5700204	6731	0.003	0.4427	No
43	TBX5	2900132 6370484	6908	0.003	0.4333	No
44	GLI1	4560176	7168	0.002	0.4194	No
45	BMP6	2100128	7649	0.001	0.3935	No
46	RXRA	3800471	8027	-0.000	0.3732	No
47	ELL3	1770484	8389	-0.001	0.3537	No
48	TRERF1	6370017 6940138	9032	-0.003	0.3192	No
49	NCOA6	1780333 6450110	9535	-0.004	0.2922	No
50	EHF	4560088	9536	-0.004	0.2923	No
51	NPAS2	770670	9836	-0.005	0.2763	No
52	FOXH1	2060180	10511	-0.007	0.2402	No
53	CDK7	2640451	11027	-0.009	0.2127	No
54	NOTCH4	2450040 6370707	11342	-0.010	0.1961	No
55	HIF1A	5670605	11601	-0.012	0.1825	No
56	THRAP3	6180309	11717	-0.012	0.1767	No
57	NUFIP1	6350241	12136	-0.015	0.1546	No
58	GLI2	3060632	12387	-0.017	0.1417	No
59	UTF1	5700593	12950	-0.022	0.1121	No
60	IL4	6020537	13283	-0.026	0.0950	No
61	FOXO3	2510484 4480451	13380	-0.028	0.0907	No
62	CREB5	2320368	13431	-0.028	0.0889	No
63	GTF2H1	2570746 2650148	14039	-0.040	0.0574	No
64	PLAGL1	3190082 6200193	14148	-0.043	0.0529	No
65	SMARCD3	4070497	14286	-0.047	0.0470	No
66	TCF3	5080022	14375	-0.049	0.0438	No
67	NARG1	5910563 6350095	14397	-0.050	0.0443	No
68	ERCC3	6900008	14917	-0.068	0.0184	No
69	DYRK1B	5860706	15024	-0.073	0.0150	No
70	ELF4	4850193	15183	-0.082	0.0091	No
71	CLOCK	1410070 2940292 3390075	15257	-0.086	0.0079	No
72	EPAS1	5290156	15387	-0.094	0.0040	No
73	HNF4A	6620440	15585	-0.111	-0.0031	No
74	EPC1	1570050 5290095 6900193	15826	-0.135	-0.0118	No
75	TGFB1	1940162	15875	-0.140	-0.0099	No
76	MAP2K3	5570193	15974	-0.155	-0.0102	No
77	SPI1	1410397	15991	-0.158	-0.0061	No
78	TRIM28	380292	16232	-0.189	-0.0130	No
79	RBM14	5340731 5690315	16739	-0.262	-0.0319	No
80	SUPT5H	4150546	16987	-0.306	-0.0355	No
81	SUPT4H1	6200056	17021	-0.312	-0.0273	No
82	SQSTM1	6550056	17055	-0.319	-0.0189	No
83	SCAP	3800706	17258	-0.361	-0.0183	No
84	SMAD3	6450671	17586	-0.454	-0.0215	No
85	TP53	6130707	17702	-0.490	-0.0121	No
86	SMARCD1	3060193 3850184 6400369	17805	-0.536	-0.0004	No
87	ERCC2	2360750 4060390 6550138	17996	-0.639	0.0097	No
88	HMGA1	6580408	18109	-0.743	0.0274	No