Details for gene set POSITIVE_REGULATION_OF

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch_repos
Phenotype	phenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in class	absentNotch
GeneSet	POSITIVE_REGULATION_OF_TRANSCRIPTION
Enrichment Score (ES)	0.63493276
Normalized Enrichment Score (NES)	1.5612236
Nominal p-value	0.0020703934
FDR q-value	0.27695698
FWER p-Value	0.955

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ARID1A	2630022 1690551 4810110	0	5.910	0.1708	Yes
2	ILF3	940722 3190647 6520110	40	2.079	0.2287	Yes
3	XRCC6	2850450 3870528	65	1.682	0.2760	Yes
4	ATF4	730441 1740195	80	1.582	0.3210	Yes
5	ATF7IP	2690176 6770021	87	1.539	0.3651	Yes
6	TNFRSF1A	1090390 6520735	100	1.464	0.4068	Yes
7	CTCF	5340017	161	1.243	0.4394	Yes
8	ELF1	4780450	249	1.032	0.4646	Yes
9	SMARCC1	5080019 7100047	471	0.786	0.4753	Yes
10	MED6	6840500	478	0.778	0.4975	Yes
11	RUNX1	3840711	697	0.634	0.5040	Yes
12	HNRPAB	540504	740	0.612	0.5194	Yes
13	CCNH	3190347	764	0.603	0.5356	Yes
14	MNAT1	730292 2350364	823	0.572	0.5490	Yes
15	ARHGEF11	1780288	847	0.563	0.5640	Yes
16	MAML1	2760008	876	0.553	0.5785	Yes
17	MED12	4920095	903	0.542	0.5927	Yes
18	CREBBP	5690035 7040050	909	0.541	0.6081	Yes
19	MYO6	2190332	1416	0.355	0.5910	Yes
20	ILF2	2900253	1452	0.347	0.5991	Yes
21	YAF2	940053	1490	0.338	0.6069	Yes
22	TCF4	520021	1564	0.320	0.6122	Yes
23	SMAD2	4200592	1581	0.312	0.6204	Yes
24	RSF1	1580097	1591	0.309	0.6288	Yes
25	SP1	6590017	1637	0.296	0.6349	Yes
26	ARNTL	3170463	1993	0.211	0.6218	No
27	NSD1	4560519 4780672	2092	0.193	0.6221	No
28	PPARGC1B	3290114	2269	0.161	0.6173	No
29	PHF5A	2690519	2645	0.113	0.6003	No
30	CAMKK2	5270047	3087	0.074	0.5786	No
31	GATA4	1410215 2690609	3159	0.069	0.5768	No
32	MRPL12	3120112	3303	0.060	0.5708	No
33	BCL10	2360397	3328	0.059	0.5711	No
34	CITED2	5670114 5130088	3359	0.057	0.5712	No
35	NRIP1	3190039	3388	0.055	0.5713	No
36	YWHAH	1660133 2810053	3745	0.038	0.5531	No
37	BPTF	940541 4540152	4111	0.025	0.5341	No
38	GLIS1	840471	4493	0.018	0.5140	No
39	ACVR1	6840671	4525	0.017	0.5129	No
40	FOXP3	940707 1850692	4608	0.016	0.5089	No
41	FOXD3	6550156	4790	0.014	0.4995	No
42	RGMB	670504 4570450	4870	0.013	0.4956	No
43	SMARCA1	4230315	5194	0.010	0.4785	No
44	RORB	6400035	5304	0.009	0.4728	No
45	MYST4	1400563 2570687 3360458 6840402	5351	0.009	0.4706	No
46	UBB	4810138	5647	0.008	0.4549	No
47	ESRRG	4010181	5662	0.007	0.4544	No
48	PAX8	5050301 5290164	6032	0.006	0.4346	No
49	FOXF2	1240091	6199	0.005	0.4258	No
50	FOXE1	4810164	6444	0.004	0.4127	No
51	MKL2	5700204	6731	0.003	0.3973	No
52	TBX5	2900132 6370484	6908	0.003	0.3879	No
53	GLI1	4560176	7168	0.002	0.3740	No
54	BMP6	2100128	7649	0.001	0.3481	No
55	RXRA	3800471	8027	-0.000	0.3277	No
56	ARNT2	1740594	8081	-0.000	0.3249	No
57	ELL3	1770484	8389	-0.001	0.3083	No
58	NFATC2	70450 540097	8399	-0.001	0.3078	No
59	TRERF1	6370017 6940138	9032	-0.003	0.2738	No
60	NCOA6	1780333 6450110	9535	-0.004	0.2468	No
61	EHF	4560088	9536	-0.004	0.2469	No
62	NPAS2	770670	9836	-0.005	0.2309	No
63	FOXH1	2060180	10511	-0.007	0.1947	No
64	CDK7	2640451	11027	-0.009	0.1671	No
65	NOTCH4	2450040 6370707	11342	-0.010	0.1504	No
66	HIF1A	5670605	11601	-0.012	0.1368	No
67	THRAP3	6180309	11717	-0.012	0.1310	No
68	ACVRL1	3290600	11913	-0.013	0.1208	No
69	NUFIP1	6350241	12136	-0.015	0.1093	No
70	GLI2	3060632	12387	-0.017	0.0962	No
71	UTF1	5700593	12950	-0.022	0.0665	No
72	IRF4	610133	13074	-0.024	0.0606	No
73	IL4	6020537	13283	-0.026	0.0501	No
74	FOXO3	2510484 4480451	13380	-0.028	0.0457	No
75	CREB5	2320368	13431	-0.028	0.0438	No
76	GTF2H1	2570746 2650148	14039	-0.040	0.0122	No
77	PLAGL1	3190082 6200193	14148	-0.043	0.0076	No
78	GLIS2	4150471 4810170	14250	-0.046	0.0034	No
79	SMARCD3	4070497	14286	-0.047	0.0029	No
80	TCF3	5080022	14375	-0.049	-0.0005	No
81	NARG1	5910563 6350095	14397	-0.050	-0.0002	No
82	ERCC3	6900008	14917	-0.068	-0.0263	No
83	DYRK1B	5860706	15024	-0.073	-0.0299	No
84	ELF4	4850193	15183	-0.082	-0.0361	No
85	NUP62	1240128	15205	-0.083	-0.0348	No
86	CLOCK	1410070 2940292 3390075	15257	-0.086	-0.0351	No
87	HIVEP3	3990551	15375	-0.094	-0.0387	No
88	EPAS1	5290156	15387	-0.094	-0.0365	No
89	HNF4A	6620440	15585	-0.111	-0.0440	No
90	BCL3	3990440	15669	-0.119	-0.0450	No
91	EPC1	1570050 5290095 6900193	15826	-0.135	-0.0496	No
92	TGFB1	1940162	15875	-0.140	-0.0481	No
93	MAP2K3	5570193	15974	-0.155	-0.0489	No
94	SPI1	1410397	15991	-0.158	-0.0452	No
95	MYST1	2190397	15998	-0.159	-0.0410	No
96	TRIM28	380292	16232	-0.189	-0.0481	No
97	MYST3	5270500	16625	-0.244	-0.0622	No
98	BMP7	870039	16732	-0.261	-0.0604	No
99	RBM14	5340731 5690315	16739	-0.262	-0.0532	No
100	SUPT5H	4150546	16987	-0.306	-0.0577	No
101	SUPT4H1	6200056	17021	-0.312	-0.0504	No
102	SQSTM1	6550056	17055	-0.319	-0.0430	No
103	SCAP	3800706	17258	-0.361	-0.0435	No
104	SMAD3	6450671	17586	-0.454	-0.0480	No
105	TP53	6130707	17702	-0.490	-0.0401	No
106	SMARCD1	3060193 3850184 6400369	17805	-0.536	-0.0301	No
107	ERCC2	2360750 4060390 6550138	17996	-0.639	-0.0219	No
108	HMGA1	6580408	18109	-0.743	-0.0065	No
109	EGR1	4610347	18402	-1.171	0.0116	No