Details for gene set GLYCOPROTEIN_METABOLIC

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	GLYCOPROTEIN_METABOLIC_PROCESS
Enrichment Score (ES)	-0.65328586
Normalized Enrichment Score (NES)	-1.5119463
Nominal p-value	0.007936508
FDR q-value	0.47792548
FWER p-Value	0.998

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CLN3	780368	1147	0.635	-0.0328	No
2	FUT4	2030324	1175	0.618	-0.0060	No
3	ALG5	3060692 4780093 6590097	1228	0.592	0.0183	No
4	MPDU1	1850091	1361	0.527	0.0353	No
5	ALG12	1400692	2581	0.189	-0.0218	No
6	GCS1	1740603	2591	0.187	-0.0137	No
7	B3GALT5	4060047	2599	0.185	-0.0056	No
8	GALNT6	3710377	2793	0.155	-0.0090	No
9	ALG1	2570112	3010	0.127	-0.0148	No
10	BACE2	4060170 5690100 6220133	3031	0.125	-0.0102	No
11	TXNDC4	450537	3105	0.116	-0.0088	No
12	MAN1C1	730133 870398 2340044	3220	0.105	-0.0101	No
13	PSEN2	130382	3230	0.104	-0.0058	No
14	ALG8	4150497 4780500 6290563	3395	0.090	-0.0105	No
15	MGAT4B	130053 6840100	3430	0.087	-0.0084	No
16	MAN1A2	5700435 5720114	3882	0.059	-0.0300	No
17	DPM2	3610253	4323	0.042	-0.0518	No
18	ST8SIA2	2680082	4545	0.035	-0.0621	No
19	DPM1	1240050 4810019 6380398	4594	0.034	-0.0632	No
20	B3GALNT1	3390746 60131	4990	0.026	-0.0833	No
21	GAL3ST1	5080746	5642	0.018	-0.1176	No
22	LRP2	1400204 3290706	5929	0.015	-0.1323	No
23	TUSC3	1690411	6414	0.012	-0.1579	No
24	GALNT1	4070487 6130100 6250132 6900048	7010	0.009	-0.1896	No
25	APH1A	4060273 4670465 6450711	7934	0.005	-0.2391	No
26	TSPAN8	1740538	8631	0.003	-0.2765	No
27	LDLR	5670386	8928	0.002	-0.2923	No
28	DPM3	50039	8976	0.002	-0.2948	No
29	FUT1	1500068	9350	0.001	-0.3148	No
30	GALNT7	3990280	9669	0.000	-0.3320	No
31	ST8SIA3	6940427	9878	-0.000	-0.3432	No
32	MGAT4A	5690471	10069	-0.001	-0.3534	No
33	STT3A	580139	10410	-0.002	-0.3716	No
34	POMT1	2680047 3440040 6660114	10915	-0.003	-0.3987	No
35	B3GALT2	430136	11078	-0.004	-0.4072	No
36	ADAMTS9	2760079	11308	-0.005	-0.4194	No
37	GCNT3	6290239	11400	-0.005	-0.4241	No
38	RPN1	1240113	11442	-0.005	-0.4261	No
39	ALG6	4060131	11667	-0.006	-0.4379	No
40	ACHE	5290750	12092	-0.008	-0.4604	No
41	FUT2	3990047	12109	-0.008	-0.4609	No
42	FUT9	3940121	12163	-0.008	-0.4634	No
43	TSPAN7	870133	12203	-0.008	-0.4651	No
44	MGEA5	6100014	12244	-0.008	-0.4669	No
45	NGLY1	1570037	12354	-0.009	-0.4724	No
46	KEL	6940440	12775	-0.011	-0.4946	No
47	APOA4	4120451	13061	-0.013	-0.5093	No
48	AGA	6350292	13080	-0.013	-0.5097	No
49	ALK	730008	13284	-0.014	-0.5200	No
50	TM4SF4	540600	13520	-0.017	-0.5319	No
51	IL17A	4280369	14067	-0.024	-0.5603	No
52	B3GNT5	4780528	14137	-0.025	-0.5629	No
53	LIPC	2690497	14343	-0.029	-0.5726	No
54	FUT10	6510603	14634	-0.036	-0.5866	No
55	FUT8	1340068 2340056	14780	-0.041	-0.5925	No
56	FUT7	2900736	15054	-0.055	-0.6047	No
57	ST8SIA4	2680605 3060215	15082	-0.057	-0.6036	No
58	POFUT1	1570458	15165	-0.062	-0.6052	No
59	GCNT1	940129 1780215 2370253	15910	-0.132	-0.6393	No
60	COG7	360133	15920	-0.132	-0.6337	No
61	LARGE	6940068	16123	-0.161	-0.6373	No
62	COG2	5900129	16421	-0.209	-0.6437	Yes
63	COG3	3840746	16493	-0.222	-0.6374	Yes
64	GYPC	2320102	16686	-0.267	-0.6355	Yes
65	ALG2	3990091	17013	-0.351	-0.6370	Yes
66	OGT	2360131 4610333	17176	-0.406	-0.6272	Yes
67	BACE1	2650438	17187	-0.409	-0.6090	Yes
68	SDF2	2690601	17496	-0.536	-0.6010	Yes
69	MAN2B1	4210446	17722	-0.670	-0.5825	Yes
70	GALNT2	2260279 4060239	17819	-0.727	-0.5544	Yes
71	DOLPP1	4780619 6400053	17823	-0.728	-0.5213	Yes
72	CD37	770273	17996	-0.869	-0.4908	Yes
73	B3GALT4	2340239	18126	-1.020	-0.4510	Yes
74	NCSTN	940601 6400594	18240	-1.190	-0.4027	Yes
75	TM4SF5	3120280	18277	-1.287	-0.3457	Yes
76	PSEN1	130403 2030647 6100603	18435	-1.758	-0.2737	Yes
77	ABCG1	60692	18470	-1.918	-0.1877	Yes
78	TNIP1	2510279 5900041 6510435	18608	-4.273	0.0004	Yes