Details for gene set V$SMAD3

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	V$SMAD3_Q6
Enrichment Score (ES)	0.58305013
Normalized Enrichment Score (NES)	1.3838614
Nominal p-value	0.009724474
FDR q-value	0.8724475
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ARID1A	2630022 1690551 4810110	7	5.913	0.1275	Yes
2	CHDH	2570711 6200338	40	3.397	0.1992	Yes
3	IL17RB	6590215	109	2.502	0.2496	Yes
4	C1QB	5910292	159	2.145	0.2933	Yes
5	CDKN1A	4050088 6400706	188	2.027	0.3357	Yes
6	WNT8B	4560301	209	1.875	0.3751	Yes
7	SLC6A9	2470520	276	1.588	0.4059	Yes
8	HMGB1	2120670 2350044	338	1.462	0.4342	Yes
9	H1F0	1400408	348	1.437	0.4648	Yes
10	EMID1	3190079 5130152	385	1.364	0.4923	Yes
11	GADD45G	2510142	458	1.243	0.5153	Yes
12	NLGN2	5900592	530	1.115	0.5356	Yes
13	PIK3R3	1770333	800	0.839	0.5391	Yes
14	SKP1A	2450102	939	0.756	0.5480	Yes
15	PPP3CB	6020156	1128	0.643	0.5517	Yes
16	ELOVL1	2450019 4760138 5340685	1220	0.595	0.5596	Yes
17	SAV1	5420541	1372	0.523	0.5628	Yes
18	NDUFS2	4850020 6200402	1386	0.519	0.5733	Yes
19	KCTD15	2810735	1516	0.469	0.5765	Yes
20	OLIG3	1050603	1654	0.419	0.5781	Yes
21	THBS2	2850136	1723	0.400	0.5831	Yes
22	HOXB1	2120110	1999	0.318	0.5750	No
23	MORF4L2	6450133	2024	0.312	0.5805	No
24	FOXP1	6510433	2131	0.282	0.5808	No
25	DCTN2	540471 3780717	2329	0.237	0.5753	No
26	TAF6L	1850056	2630	0.179	0.5629	No
27	BZW2	940079	2925	0.136	0.5499	No
28	NYX	4120239	2975	0.131	0.5501	No
29	ZADH2	520438	3011	0.127	0.5509	No
30	PHF15	6550066 6860673	3065	0.122	0.5507	No
31	LOX	5340372	3074	0.121	0.5529	No
32	CACNB3	2480035 4540184	3445	0.086	0.5347	No
33	CLTC	6590458	3605	0.076	0.5277	No
34	SSBP3	870717 1050377 7040551	3782	0.065	0.5196	No
35	CACNB2	1500095 7330707	3848	0.061	0.5174	No
36	ACVR1	6840671	3959	0.056	0.5126	No
37	LAMC2	450692 2680041 4200059 4670148	4016	0.053	0.5107	No
38	HOXC6	3850133 4920736	4060	0.051	0.5095	No
39	DUSP3	1240129 6840215	4082	0.050	0.5094	No
40	KCNJ8	870494	4143	0.048	0.5072	No
41	NR2F2	3170609 3310577	4398	0.040	0.4943	No
42	NOS3	630152 670465	4451	0.038	0.4923	No
43	MRC2	110369 2480520	4505	0.036	0.4902	No
44	PDE4D	2470528 6660014	4558	0.035	0.4882	No
45	CSF3	2230193 6660707	4566	0.035	0.4885	No
46	MTMR4	4540524	4916	0.027	0.4702	No
47	GPC3	6180735	4927	0.027	0.4703	No
48	ERG	50154 1770739	5000	0.026	0.4669	No
49	DDEF1	1170411 4070465	5020	0.025	0.4664	No
50	DLX3	3190497	5591	0.018	0.4359	No
51	APBB2	5130403	5604	0.018	0.4357	No
52	ESRRG	4010181	5656	0.018	0.4333	No
53	PITX3	3130162	5703	0.017	0.4312	No
54	GABRE	4780020	5852	0.016	0.4235	No
55	LRP2	1400204 3290706	5929	0.015	0.4197	No
56	EYA4	5360286	6098	0.014	0.4109	No
57	HES7	4610239	6181	0.013	0.4067	No
58	SCRG1	2060541	6226	0.013	0.4046	No
59	RIMS1	5670022	6451	0.012	0.3928	No
60	PAK3	4210136	6603	0.011	0.3848	No
61	ARHGEF19	940102	6656	0.011	0.3822	No
62	NXPH4	3830500	6857	0.010	0.3716	No
63	CABP2	840142	7063	0.009	0.3607	No
64	LIN28	6590672	7157	0.008	0.3558	No
65	IRX5	2630494	7310	0.008	0.3477	No
66	EYA1	1450278 5220390	7489	0.007	0.3382	No
67	PABPC5	2320408	7542	0.007	0.3356	No
68	JUB	5860711 5900500	7669	0.006	0.3289	No
69	SMAD6	870504	7715	0.006	0.3266	No
70	TLX1	2630162	7776	0.006	0.3235	No
71	TNRC4	4050156	7834	0.006	0.3205	No
72	ZRANB1	510373 4540278	7838	0.006	0.3205	No
73	TITF1	3390554 4540292	8062	0.005	0.3085	No
74	HOXC4	1940193	8098	0.005	0.3067	No
75	RNF12	6860717	8227	0.005	0.2999	No
76	SMPX	6590440	8821	0.003	0.2678	No
77	CDK5R2	3800110	8851	0.003	0.2663	No
78	CHST9	4560092	8913	0.003	0.2630	No
79	PAX3	50551	8925	0.002	0.2625	No
80	SKIL	1090364	8954	0.002	0.2610	No
81	FAP	4560019	9115	0.002	0.2524	No
82	CRABP2	6940725	9162	0.002	0.2499	No
83	ANXA9	1190195	9249	0.002	0.2453	No
84	ITIH3	3830551	9328	0.001	0.2411	No
85	FGF7	5390484	9464	0.001	0.2338	No
86	BAMBI	6650463	9589	0.001	0.2271	No
87	NIN	3450576 5080048	9686	0.000	0.2219	No
88	HAPLN2	2900647	9713	0.000	0.2205	No
89	FGF23	510746	9792	0.000	0.2163	No
90	PURA	3870156	9881	-0.000	0.2115	No
91	BHLHB3	3450438	10001	-0.001	0.2051	No
92	NRXN3	1400546 3360471	10155	-0.001	0.1968	No
93	HCRT	2970463	10360	-0.002	0.1858	No
94	MYT1	6770524	10449	-0.002	0.1811	No
95	B3GALT2	430136	11078	-0.004	0.1471	No
96	CHRM1	4280619	11231	-0.004	0.1390	No
97	OTX2	1190471	11235	-0.004	0.1389	No
98	CPNE6	6520338	11283	-0.004	0.1364	No
99	POU4F1	2260315	11338	-0.005	0.1336	No
100	RFX4	3710100 5340215	11426	-0.005	0.1290	No
101	FGF14	2630390 3520075 6770048	11478	-0.005	0.1264	No
102	ATP6V1E2	6840706	11561	-0.005	0.1220	No
103	NNAT	4920053 5130253	11599	-0.006	0.1201	No
104	C1QTNF5	1690402	11609	-0.006	0.1198	No
105	CLDN16	1850286	11623	-0.006	0.1192	No
106	S100A16	2510546	11700	-0.006	0.1152	No
107	TGFB2	4920292	11752	-0.006	0.1126	No
108	EDN1	1770047	11775	-0.006	0.1115	No
109	FZD1	3140215	11807	-0.006	0.1100	No
110	FGF11	840292	11845	-0.006	0.1081	No
111	S100A14	450400	11855	-0.007	0.1078	No
112	TIMP4	6110433	12067	-0.007	0.0965	No
113	SYT7	2450528 3390500 3610687	12128	-0.008	0.0934	No
114	MFAP4	520181	12192	-0.008	0.0902	No
115	PFKFB1	2370128	12202	-0.008	0.0898	No
116	LHX6	2360731 3360397	12331	-0.009	0.0831	No
117	SMTN	670563 1190438	12493	-0.009	0.0746	No
118	EIF3S1	6130368 6770044	12499	-0.009	0.0745	No
119	MEIS1	1400575	12634	-0.010	0.0675	No
120	AGER	5860538 5910180	12762	-0.011	0.0608	No
121	RFX5	5420128	12959	-0.012	0.0505	No
122	BMPR2	5340066 6960328	13057	-0.013	0.0455	No
123	RUSC1	6450093 6980575	13381	-0.015	0.0283	No
124	RARB	430139 1410138	13554	-0.017	0.0193	No
125	WNT10B	510050	13648	-0.018	0.0147	No
126	COL11A2	5130341	13798	-0.020	0.0071	No
127	JARID2	6290538	13800	-0.020	0.0074	No
128	BTBD3	1980041 2510577 3190053 4200746	13823	-0.020	0.0067	No
129	TEAD3	2320142	13837	-0.020	0.0064	No
130	PAX2	6040270 7000133	13849	-0.021	0.0063	No
131	STX16	70315	14207	-0.026	-0.0125	No
132	GRIN2D	6620372	14233	-0.027	-0.0133	No
133	CNTFR	4480092 6200064	14421	-0.030	-0.0228	No
134	TGIF2	3840364 4050520	14490	-0.032	-0.0258	No
135	LTBP1	780035 2100746 2760402 3780551 6550184 6860193	14737	-0.040	-0.0382	No
136	JMJD1C	940575 2120025	14762	-0.040	-0.0386	No
137	ACTN2	4200435	14786	-0.042	-0.0390	No
138	POU3F4	870274	14877	-0.045	-0.0429	No
139	FOXB1	4920270 5290463	14946	-0.049	-0.0455	No
140	NTRK3	4050687 4070167 4610026 6100484	14992	-0.052	-0.0468	No
141	PVRL1	2570167 5220519 5890500 3190309	15059	-0.055	-0.0492	No
142	CRAT	540020 2060364 3520148	15073	-0.056	-0.0487	No
143	ITGAE	4210632 4670239 5340253 5420746 5690154 5700685 6770154	15630	-0.103	-0.0766	No
144	TOP1	770471 4060632 6650324	16236	-0.176	-0.1056	No
145	ZMYND17	840500	16431	-0.210	-0.1115	No
146	ZHX2	2900452	16790	-0.289	-0.1247	No
147	PTPN7	3450110	16799	-0.293	-0.1188	No
148	ALDH4A1	2450450	16813	-0.297	-0.1131	No
149	CHD2	4070039	16918	-0.325	-0.1117	No
150	ST5	3780204	16931	-0.328	-0.1052	No
151	SIPA1	5220687	16935	-0.330	-0.0983	No
152	PTPN6	4230128	17006	-0.350	-0.0945	No
153	CSDA	2470092 3060053 4780056	17011	-0.351	-0.0871	No
154	SLC4A2	2690114	17146	-0.399	-0.0858	No
155	BCL9L	6940053	17235	-0.427	-0.0813	No
156	CDK5	940348	17311	-0.458	-0.0754	No
157	BAZ2A	730184	17621	-0.608	-0.0790	No
158	RAI1	110377 5340670	17641	-0.617	-0.0667	No
159	DOCK9	5080037	17729	-0.672	-0.0569	No
160	ASB2	4760168	17748	-0.683	-0.0431	No
161	PDLIM2	2450603 2810551 3830040 4670164	17777	-0.700	-0.0295	No
162	KLF7	50390	18012	-0.886	-0.0230	No
163	AGPAT4	6040079	18093	-0.980	-0.0062	No
164	ANKMY2	780600 2230440	18386	-1.593	0.0125	No