Details for gene set V$NMYC

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	V$NMYC_01
Enrichment Score (ES)	0.66211283
Normalized Enrichment Score (NES)	1.5786244
Nominal p-value	0.0
FDR q-value	0.1829349
FWER p-Value	0.388

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PABPC1	2650180 2690253 6020632 1990270	3	6.314	0.0934	Yes
2	TIMM10	610070 1450019	12	4.552	0.1605	Yes
3	PABPC4	1990170 6760270 5390138	20	4.232	0.2228	Yes
4	HMOX1	1740687	30	3.784	0.2784	Yes
5	CEBPB	2970019	196	1.950	0.2984	Yes
6	SH3KBP1	670102 2850458 7000309	219	1.839	0.3244	Yes
7	ATAD3A	4050288	292	1.547	0.3435	Yes
8	GJA1	5220731	295	1.543	0.3662	Yes
9	VARS2	1410017 3800114 4210270	330	1.473	0.3862	Yes
10	PRDX4	3800039	331	1.472	0.4081	Yes
11	FBL	5130020	398	1.351	0.4245	Yes
12	IPO4	5050619	451	1.250	0.4402	Yes
13	HSPD1	60097 2030451	452	1.249	0.4587	Yes
14	GADD45G	2510142	458	1.243	0.4769	Yes
15	U2AF2	450600 4670128 5420292	459	1.236	0.4952	Yes
16	PPAT	1980019	515	1.138	0.5091	Yes
17	NR1D1	2360471 770746 6590204	543	1.102	0.5240	Yes
18	NOL5A	5570139	571	1.069	0.5383	Yes
19	ATP5G1	5290019	647	0.984	0.5489	Yes
20	EIF4B	5390563 5270577	688	0.933	0.5605	Yes
21	GPD1	2480095	747	0.885	0.5705	Yes
22	G6PC3	1580487 5390253	789	0.849	0.5809	Yes
23	PA2G4	2030463	823	0.827	0.5913	Yes
24	HSPE1	3170438	845	0.815	0.6023	Yes
25	BCL7C	460050	848	0.812	0.6142	Yes
26	VPS16	430064 3390041 6860301	885	0.786	0.6239	Yes
27	HYAL2	1500152	952	0.749	0.6314	Yes
28	DLX1	360168	1042	0.689	0.6368	Yes
29	PES1	2470427	1195	0.610	0.6376	Yes
30	FKBP5	2190048	1218	0.596	0.6452	Yes
31	RPL22	4070070	1319	0.549	0.6480	Yes
32	FKBP10	1340706	1365	0.525	0.6533	Yes
33	LMNB1	5890292 6020008	1526	0.464	0.6515	Yes
34	GTPBP1	2230541 4560528	1580	0.443	0.6552	Yes
35	LIG3	2940300	1680	0.410	0.6559	Yes
36	POLR3E	380152	1681	0.410	0.6620	Yes
37	COPS7A	3940458 7000022	1848	0.360	0.6583	Yes
38	SRP72	3990427	1920	0.340	0.6595	Yes
39	HMGN2	3140091	1962	0.326	0.6621	Yes
40	EIF4G1	4070446	2101	0.290	0.6589	No
41	FHOD1	2680279	2286	0.246	0.6526	No
42	ELOVL6	5340746	2378	0.226	0.6510	No
43	KRTCAP2	5220040	2490	0.206	0.6481	No
44	ZCCHC7	6510592	2660	0.175	0.6415	No
45	PPARGC1B	3290114	2856	0.146	0.6331	No
46	TPM2	520735 3870390	2996	0.128	0.6274	No
47	RBM3	2360739 5700167	3096	0.118	0.6238	No
48	PSEN2	130382	3230	0.104	0.6181	No
49	CACNA1D	1740315 4730731	3233	0.103	0.6196	No
50	B4GALT2	780037	3257	0.101	0.6198	No
51	CDC14A	4050132	3274	0.100	0.6204	No
52	CTSF	6100021	3285	0.099	0.6214	No
53	MYST3	5270500	3341	0.094	0.6198	No
54	RBBP6	2320129	3567	0.078	0.6087	No
55	RPL13A	2680519 5700142	3580	0.077	0.6092	No
56	NRAS	6900577	3584	0.077	0.6102	No
57	CTBP2	430309 3710079	3596	0.076	0.6107	No
58	ATP6V0B	2810112	3618	0.075	0.6107	No
59	AMPD2	630093 1170070	3791	0.064	0.6023	No
60	SOX12	1780037	4066	0.051	0.5882	No
61	MAPKAPK3	630520	4093	0.050	0.5875	No
62	NR5A1	70707	4389	0.040	0.5721	No
63	XRN2	130603 1230113 4230309	4509	0.036	0.5662	No
64	ADCY3	2350347 3440242	4516	0.036	0.5664	No
65	RAD9A	110300 1940632 3990390 6040014	4563	0.035	0.5644	No
66	BARHL1	4210113	4661	0.032	0.5597	No
67	TIAL1	4150048 6510605	4920	0.027	0.5461	No
68	GPC3	6180735	4927	0.027	0.5462	No
69	BAI2	380632 630113 6650170	4972	0.026	0.5442	No
70	ETV1	70735 2940603 5080463	5007	0.026	0.5427	No
71	ARRDC3	4610390	5195	0.023	0.5329	No
72	DUSP4	2690044 2850593	5223	0.022	0.5317	No
73	SC5DL	6650390	5326	0.021	0.5265	No
74	COL2A1	460446 3940500	5364	0.021	0.5248	No
75	SEMA7A	2630239 5050593	5435	0.020	0.5213	No
76	NXPH1	3870546	5490	0.019	0.5187	No
77	PANK3	3060687	5832	0.016	0.5004	No
78	NEUROD2	5290097	5838	0.016	0.5004	No
79	GPS1	2470037 4760315 6200528 7100040	5894	0.016	0.4976	No
80	SOCS5	3830398 7100093	5972	0.015	0.4937	No
81	JPH1	610739	6272	0.013	0.4777	No
82	ADAMTS17	6510739	6278	0.013	0.4776	No
83	POGK	5290315	6284	0.013	0.4775	No
84	RTN4RL2	6450609	6497	0.012	0.4662	No
85	STMN4	2900091	6813	0.010	0.4492	No
86	SLC12A5	1980692	6881	0.009	0.4457	No
87	LIN28	6590672	7157	0.008	0.4309	No
88	NRXN1	460408 5340270 6370066	7238	0.008	0.4267	No
89	NKX2-2	4150731	7316	0.008	0.4227	No
90	AKAP10	2630504 5910577	7317	0.008	0.4228	No
91	DNMT3A	4050068 4810717	7337	0.008	0.4219	No
92	RUNX2	1400193 4230215	7615	0.007	0.4069	No
93	WEE1	3390070	7696	0.006	0.4027	No
94	SLC38A5	540093	7813	0.006	0.3965	No
95	ADAM10	3780156	7915	0.006	0.3911	No
96	PRKCE	5700053	7983	0.005	0.3875	No
97	DNAJB9	460114	8178	0.005	0.3771	No
98	LAP3	2570064	8297	0.004	0.3707	No
99	PCDHA10	3830725	8385	0.004	0.3661	No
100	PLA2G4A	6380364	8462	0.004	0.3620	No
101	SLC17A2	870593 2810035	8566	0.004	0.3565	No
102	GRIN2A	6550538	8598	0.003	0.3549	No
103	BMP2K	60541 5570504	8691	0.003	0.3499	No
104	HTF9C	3190048 4120132	8807	0.003	0.3437	No
105	NPM1	4730427	9338	0.001	0.3150	No
106	HS3ST3A1	2230497	9488	0.001	0.3069	No
107	ALX4	3870019	9569	0.001	0.3026	No
108	MTHFD1	5900398 6520427	9650	0.000	0.2983	No
109	ADPRHL1	4150133 6650300	9709	0.000	0.2951	No
110	FLT3	2640487	9828	-0.000	0.2887	No
111	ABCA1	6290156	9882	-0.000	0.2859	No
112	HPCA	6860010	10122	-0.001	0.2729	No
113	TIMM9	2450484	10264	-0.001	0.2653	No
114	EN2	7000368	10885	-0.003	0.2317	No
115	B3GALT2	430136	11078	-0.004	0.2214	No
116	ANGPT2	1230458 5720706 6040605	11202	-0.004	0.2147	No
117	CHRM1	4280619	11231	-0.004	0.2133	No
118	NUP153	7000452	11299	-0.005	0.2097	No
119	TESK2	6520524	11378	-0.005	0.2056	No
120	LHX9	2350112	11515	-0.005	0.1983	No
121	CUGBP1	450292 510022 7050176 7050215	11641	-0.006	0.1916	No
122	SNCAIP	4010551	11782	-0.006	0.1841	No
123	RCL1	1980408 2680008 3800176	11839	-0.006	0.1811	No
124	FGF11	840292	11845	-0.006	0.1810	No
125	NDUFS1	2650253	11846	-0.006	0.1811	No
126	APOA5	6130471	11913	-0.007	0.1776	No
127	POU3F1	3710022	11951	-0.007	0.1757	No
128	RNF128	1230300 5670273	12182	-0.008	0.1633	No
129	SEPT3	3830022 5290079	12235	-0.008	0.1606	No
130	KIAA0427	1690435	12337	-0.009	0.1553	No
131	HOXC13	4070722	12441	-0.009	0.1498	No
132	NEUROD6	4670731	12460	-0.009	0.1490	No
133	EIF3S1	6130368 6770044	12499	-0.009	0.1471	No
134	SCFD2	2480504	12715	-0.011	0.1356	No
135	DLC1	1090632 6450594	12761	-0.011	0.1333	No
136	MAX	5220021	13089	-0.013	0.1157	No
137	HHIP	6940438	13190	-0.014	0.1105	No
138	GRK6	1500053	13347	-0.015	0.1023	No
139	SGTB	460170	13460	-0.016	0.0964	No
140	ENPP6	110524 580563	13651	-0.018	0.0864	No
141	CHST11	6760546	13822	-0.020	0.0775	No
142	PLAGL1	3190082 6200193	13856	-0.021	0.0760	No
143	MCM8	6130743	14235	-0.027	0.0559	No
144	GNA13	4590102	14479	-0.032	0.0432	No
145	SFXN2	2650563 3140095 3830762 3870398	14573	-0.034	0.0387	No
146	RXRB	1780040 5340438	14746	-0.040	0.0299	No
147	PLAG1	1450142 3870139 6520039	14865	-0.045	0.0242	No
148	HRH3	6180040	14975	-0.051	0.0190	No
149	KCNK5	4590504 6860687	14982	-0.051	0.0195	No
150	HOXB7	4540706 4610358	15138	-0.060	0.0119	No
151	ARF6	3520026	15180	-0.063	0.0107	No
152	RAMP2	6860037	15230	-0.067	0.0090	No
153	ZZZ3	780133 2320239 2640452 5080706 6550341	15397	-0.080	0.0012	No
154	GADD45B	2350408	15439	-0.083	0.0002	No
155	TLE3	580040 4730121	15535	-0.093	-0.0036	No
156	MNT	4920575	15554	-0.096	-0.0031	No
157	SEMA3F	5420601 6770731	15577	-0.098	-0.0029	No
158	IPO13	3870088	15655	-0.106	-0.0055	No
159	HRSP12	610136 2510133 4280561 2760047	15695	-0.110	-0.0060	No
160	PFN1	6130132	15921	-0.133	-0.0162	No
161	USP2	1190292 1240253 4850035	16083	-0.156	-0.0226	No
162	CLCN2	1940021	16149	-0.164	-0.0237	No
163	SCYL1	5050717	16201	-0.172	-0.0240	No
164	TOP1	770471 4060632 6650324	16236	-0.176	-0.0232	No
165	UBE1	4150139 7050463	16334	-0.191	-0.0256	No
166	SLC20A1	6420014	16362	-0.197	-0.0242	No
167	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	16536	-0.234	-0.0301	No
168	ANXA6	2190014	16582	-0.244	-0.0289	No
169	PDK2	2690017	16623	-0.253	-0.0273	No
170	ZHX2	2900452	16790	-0.289	-0.0320	No
171	PFKFB3	630706	17072	-0.370	-0.0418	No
172	MXD4	4810113	17661	-0.632	-0.0643	No
173	AP1GBP1	2510372	17916	-0.798	-0.0662	No
174	RPIA	780079	18011	-0.885	-0.0582	No
175	STAT3	460040 3710341	18021	-0.893	-0.0455	No
176	WBP2	3170128	18054	-0.942	-0.0332	No
177	HBP1	2510102 3130010 4210619	18447	-1.783	-0.0281	No
178	TEF	1050050 3120397 4060487	18538	-2.509	0.0042	No