Details for gene set V$NFKB

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	V$NFKB_C
Enrichment Score (ES)	-0.6208781
Normalized Enrichment Score (NES)	-1.5967988
Nominal p-value	0.0
FDR q-value	0.28401715
FWER p-Value	0.335

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PCBP4	6350722	58	3.150	0.0495	No
2	ARHGAP8	380333 5390487	429	1.303	0.0512	No
3	TCEA2	6370546	503	1.153	0.0664	No
4	NDRG2	450403	766	0.868	0.0667	No
5	ENO3	5270136	1086	0.660	0.0605	No
6	BMF	610102	1094	0.658	0.0711	No
7	VCAM1	2900450	1185	0.613	0.0764	No
8	BHLHB2	7040603	1201	0.607	0.0857	No
9	NFKBIB	2260167	1352	0.533	0.0865	No
10	PRKCD	770592	1698	0.405	0.0745	No
11	CYLD	6590079	1812	0.370	0.0746	No
12	AMOTL1	380279	1978	0.323	0.0710	No
13	CDC37	2570537	2001	0.317	0.0751	No
14	SMARCAD1	5390619	2201	0.265	0.0688	No
15	RAD18	5670372	2236	0.256	0.0712	No
16	LASP1	1690528 2190341 6420341	2364	0.230	0.0681	No
17	SEC14L2	2640370	2416	0.220	0.0690	No
18	ANP32A	510044 1580095 2680037	2535	0.197	0.0659	No
19	LAMB3	7100301	2540	0.195	0.0690	No
20	SNX15	1240348 6770082	2633	0.179	0.0670	No
21	TYRO3	3130193	2664	0.175	0.0683	No
22	RAP2C	1690132	2779	0.157	0.0647	No
23	BCKDK	1940601 3990600	2994	0.129	0.0552	No
24	ZADH2	520438	3011	0.127	0.0565	No
25	CDC14A	4050132	3274	0.100	0.0439	No
26	IL27RA	940093	3277	0.100	0.0455	No
27	DAP3	1660528 2120039 5420593	3361	0.093	0.0425	No
28	WRN	540687 1240093	3477	0.083	0.0377	No
29	EGR3	6940128	3745	0.067	0.0243	No
30	ASH1L	2510402 5360687 6650685	4076	0.051	0.0073	No
31	CDK6	4920253	4077	0.051	0.0081	No
32	GPHN	3290195 3840121	4177	0.047	0.0035	No
33	TNFSF18	1990458 2850520	4247	0.044	0.0005	No
34	EGF	5220154	4268	0.043	0.0002	No
35	CLCN1	840161	4387	0.040	-0.0056	No
36	SESN2	2370019	4670	0.032	-0.0203	No
37	LRRFIP2	670575 730152 6590438	4693	0.032	-0.0210	No
38	CTGF	4540577	4717	0.031	-0.0217	No
39	NFAT5	2510411 5890195 6550152	4733	0.031	-0.0220	No
40	SNAP25	360520	4885	0.028	-0.0298	No
41	FTHL17	6550193	4929	0.027	-0.0317	No
42	BAI2	380632 630113 6650170	4972	0.026	-0.0335	No
43	PLA1A	4590040 6100204	4997	0.026	-0.0344	No
44	TRIM47	5080717	4999	0.026	-0.0340	No
45	PPP3CA	4760332 6760092	5029	0.025	-0.0351	No
46	SLC6A12	3170685	5178	0.023	-0.0428	No
47	GRK5	1940348 4670053	5251	0.022	-0.0463	No
48	IL13	7040021	5371	0.021	-0.0524	No
49	BCL3	3990440	5383	0.020	-0.0527	No
50	HSD3B7	1410129	5419	0.020	-0.0543	No
51	IFNB1	1400142	5487	0.019	-0.0576	No
52	RALGDS	430463	5840	0.016	-0.0764	No
53	PTGS2	2510301 3170369	6247	0.013	-0.0982	No
54	SIRT2	630494	6271	0.013	-0.0993	No
55	MLLT6	3870168	6281	0.013	-0.0995	No
56	PTGES	1690075	6425	0.012	-0.1071	No
57	SMPD3	520164	6448	0.012	-0.1081	No
58	EFNA3	6370390	6659	0.011	-0.1193	No
59	DACH2	460605 1500253	6779	0.010	-0.1256	No
60	PHF6	3120632 3990041	6832	0.010	-0.1283	No
61	ECT2	3830086	6975	0.009	-0.1358	No
62	RIN2	2450184	7082	0.009	-0.1414	No
63	LIN28	6590672	7157	0.008	-0.1453	No
64	DNAJA1	1660010 2320358 6840136	7468	0.007	-0.1620	No
65	PTPRJ	4010707	7524	0.007	-0.1649	No
66	MAP3K13	3190017	7593	0.007	-0.1684	No
67	IL2	1770725	8136	0.005	-0.1978	No
68	FOXD3	6550156	8199	0.005	-0.2011	No
69	CUEDC1	1660463	8295	0.004	-0.2061	No
70	SOX10	6200538	8494	0.004	-0.2168	No
71	SOX3	4570537	8774	0.003	-0.2319	No
72	FGF17	3130022	8849	0.003	-0.2359	No
73	IL1A	3610056	8910	0.003	-0.2391	No
74	MSX1	2650309	8972	0.002	-0.2424	No
75	TNFSF15	360341	9125	0.002	-0.2506	No
76	VNN3	730053 4610609	9254	0.002	-0.2575	No
77	GNAO1	2510292 6590487	9289	0.001	-0.2593	No
78	TNR	1340541	9341	0.001	-0.2621	No
79	CXCL10	2450408	9427	0.001	-0.2667	No
80	IER5	2350575	9837	-0.000	-0.2889	No
81	IL27	1990324	9885	-0.000	-0.2914	No
82	HOXA11	6980133	9946	-0.000	-0.2946	No
83	ARHGAP5	2510619 3360035	9989	-0.001	-0.2969	No
84	HOXB6	4210739	10097	-0.001	-0.3027	No
85	IL1RN	2370333	10144	-0.001	-0.3052	No
86	RND1	5080300	10180	-0.001	-0.3071	No
87	WNT10A	2100706	10190	-0.001	-0.3075	No
88	GABPB2	6130450 7050735	10308	-0.001	-0.3139	No
89	PTHLH	5290739	10686	-0.002	-0.3343	No
90	EHF	4560088	10719	-0.003	-0.3360	No
91	RAB10	2360008 5890020	10751	-0.003	-0.3376	No
92	JPH3	780397	10764	-0.003	-0.3382	No
93	MOBKL2C	2640088 3830017	10964	-0.003	-0.3489	No
94	NUP153	7000452	11299	-0.005	-0.3670	No
95	ALG6	4060131	11667	-0.006	-0.3868	No
96	LYPLA2	1500112	11689	-0.006	-0.3879	No
97	BDNF	2940128 3520368	11795	-0.006	-0.3934	No
98	GNG4	2630600	11983	-0.007	-0.4035	No
99	CCL22	6380086	11985	-0.007	-0.4034	No
100	UBE2I	2680056 6350446	12088	-0.008	-0.4088	No
101	HOXB9	2640687	12324	-0.009	-0.4214	No
102	PAPPA	4230463	12352	-0.009	-0.4227	No
103	C1QL1	2030465	12463	-0.009	-0.4286	No
104	TSNAXIP1	1770270 6180577	12492	-0.009	-0.4299	No
105	SEMA3B	5570563	12565	-0.010	-0.4337	No
106	IL23A	6290044	12726	-0.011	-0.4422	No
107	FGF1	4780435 5670601	12756	-0.011	-0.4436	No
108	DCAMKL1	540095 2690092	12820	-0.011	-0.4468	No
109	SOX5	2370576 2900167 3190128 5050528	13250	-0.014	-0.4698	No
110	GATA4	1410215 2690609	13407	-0.015	-0.4780	No
111	ARPC5	1740411 3450300	13625	-0.018	-0.4895	No
112	MAG	2370037	13629	-0.018	-0.4894	No
113	SP6	60484 510452 2690333	13718	-0.019	-0.4938	No
114	COL11A2	5130341	13798	-0.020	-0.4978	No
115	TSLP	730408 1990500	13834	-0.020	-0.4993	No
116	STAT6	1190010 5720019	13858	-0.021	-0.5002	No
117	FOS	1850315	14022	-0.023	-0.5087	No
118	SLC34A3	2230242	14203	-0.026	-0.5180	No
119	RGL1	1500097 6900450	14208	-0.026	-0.5178	No
120	GRIN2D	6620372	14233	-0.027	-0.5187	No
121	FOXA3	2680121	14245	-0.027	-0.5188	No
122	PCSK2	360017 430528 5900619	14258	-0.027	-0.5190	No
123	ASCL3	4570484	14262	-0.027	-0.5187	No
124	DUSP22	4280010 5550546	14361	-0.029	-0.5235	No
125	LCAT	6400441	14403	-0.030	-0.5253	No
126	GNA13	4590102	14479	-0.032	-0.5288	No
127	CDH5	5340487	14582	-0.035	-0.5338	No
128	PIGC	5690377	14627	-0.036	-0.5356	No
129	DDR1	2060044 5220180	14631	-0.036	-0.5351	No
130	BLR1	1500300 5420017	14670	-0.037	-0.5366	No
131	SIN3A	2190121	14684	-0.037	-0.5366	No
132	ITGB4	1740021 3840482	14703	-0.038	-0.5370	No
133	PPP1R13B	4010605 4760181	14929	-0.048	-0.5484	No
134	SLAMF8	1230048	15022	-0.053	-0.5525	No
135	FUT7	2900736	15054	-0.055	-0.5532	No
136	JAK3	70347 3290008	15166	-0.062	-0.5582	No
137	NLK	2030010 2450041	15169	-0.062	-0.5573	No
138	MSC	5080139	15185	-0.064	-0.5570	No
139	CHX10	3830184	15247	-0.068	-0.5592	No
140	PPP2R5E	70671 2120056	15265	-0.069	-0.5590	No
141	IL18R1	270546	15434	-0.083	-0.5667	No
142	GADD45B	2350408	15439	-0.083	-0.5655	No
143	FOXD2	4210035	15489	-0.088	-0.5667	No
144	TAL1	7040239	15516	-0.090	-0.5666	No
145	MNT	4920575	15554	-0.096	-0.5670	No
146	MAP3K8	2940286	15842	-0.125	-0.5805	No
147	PFN1	6130132	15921	-0.133	-0.5825	No
148	TOP1	770471 4060632 6650324	16236	-0.176	-0.5966	No
149	EDG5	2640300	16351	-0.195	-0.5996	No
150	ARHGEF2	3360577	16369	-0.198	-0.5972	No
151	FLI1	3990142	16745	-0.280	-0.6129	No
152	ZHX2	2900452	16790	-0.289	-0.6104	No
153	PURG	1190593	16984	-0.344	-0.6151	Yes
154	SOCS2	4760692	17029	-0.355	-0.6116	Yes
155	BCL11A	6860369	17052	-0.364	-0.6067	Yes
156	CHD4	5420059 6130338 6380717	17136	-0.395	-0.6046	Yes
157	CENTB5	5690128	17229	-0.425	-0.6025	Yes
158	NFKBIA	1570152	17293	-0.450	-0.5984	Yes
159	EIF5A	1500059 5290022 6370026	17308	-0.457	-0.5915	Yes
160	NFKB2	2320670	17315	-0.460	-0.5841	Yes
161	HCFC1	2260008	17532	-0.552	-0.5866	Yes
162	UACA	1190725	17555	-0.565	-0.5784	Yes
163	XPO6	3940019	17575	-0.577	-0.5698	Yes
164	ICAM1	6980138	17634	-0.612	-0.5627	Yes
165	CGGBP1	4810053	17727	-0.671	-0.5565	Yes
166	IRF1	2340152 3450592 6290121 6980577	17795	-0.709	-0.5483	Yes
167	FOXJ2	2450441	17804	-0.717	-0.5368	Yes
168	IL2RA	6620450	17824	-0.729	-0.5256	Yes
169	IL4I1	3190161	17850	-0.746	-0.5145	Yes
170	RHOG	6760575	17856	-0.752	-0.5022	Yes
171	TRIB2	4120605	17867	-0.758	-0.4901	Yes
172	TCTA	2680687	17919	-0.800	-0.4795	Yes
173	RANBP10	2340184	17944	-0.819	-0.4671	Yes
174	LCN2	2510112	17978	-0.846	-0.4548	Yes
175	BCL2L1	1580452 4200152 5420484	18009	-0.884	-0.4417	Yes
176	MRPS6	870164	18015	-0.888	-0.4271	Yes
177	TAZ	7100193	18065	-0.955	-0.4138	Yes
178	USP52	3710215 6380133	18151	-1.047	-0.4009	Yes
179	EGR2	3800403	18301	-1.337	-0.3867	Yes
180	RORC	1740121	18341	-1.439	-0.3648	Yes
181	EPHB6	5860128	18377	-1.561	-0.3406	Yes
182	CCL5	3710397	18504	-2.172	-0.3111	Yes
183	LTB	3990672	18557	-2.728	-0.2684	Yes
184	S100A10	6350010	18564	-2.797	-0.2220	Yes
185	SMOC1	840039	18589	-3.340	-0.1675	Yes
186	TNIP1	2510279 5900041 6510435	18608	-4.273	-0.0971	Yes
187	RHOA	580142 5900131 5340450	18613	-5.837	0.0002	Yes