Details for gene set V$GFI1

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	V$GFI1_01
Enrichment Score (ES)	-0.5967353
Normalized Enrichment Score (NES)	-1.5471243
Nominal p-value	0.0028571428
FDR q-value	0.17508633
FWER p-Value	0.562

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SFRS2	50707 380593	63	3.079	0.0549	No
2	MBNL1	2640762 7100048	713	0.914	0.0370	No
3	ABCF2	630040 3140035 6450601	718	0.910	0.0541	No
4	ATP5G2	840068	759	0.874	0.0685	No
5	SREBF2	3390692	819	0.828	0.0810	No
6	CSAD	770215	827	0.826	0.0963	No
7	STMN1	1990717	1289	0.561	0.0819	No
8	MCTS1	6130133	1588	0.441	0.0741	No
9	HMGA1	6580408	1592	0.440	0.0823	No
10	USP5	4850017	1672	0.412	0.0858	No
11	SERTAD4	130593	1850	0.359	0.0830	No
12	MYO1C	3190398	1906	0.343	0.0865	No
13	EXOC7	3060037	1919	0.340	0.0923	No
14	TMPRSS2	2970279	2056	0.304	0.0907	No
15	TLK1	7100605	2300	0.243	0.0821	No
16	TCF4	520021	2397	0.223	0.0811	No
17	PPARGC1B	3290114	2856	0.146	0.0590	No
18	CAMK2D	2370685	2879	0.142	0.0605	No
19	MYH10	2640673	2923	0.136	0.0607	No
20	TPBG	630161	2956	0.133	0.0615	No
21	XPO5	2850286	2966	0.132	0.0635	No
22	PDC	3140400 3780184	3193	0.108	0.0533	No
23	YWHAE	5310435	3213	0.106	0.0543	No
24	PPP2R2A	2900014 5700575	3231	0.104	0.0553	No
25	ETS1	5270278 6450717 6620465	3268	0.100	0.0553	No
26	TRIM23	580168 6510672	3286	0.099	0.0562	No
27	AVP	2100113	3308	0.097	0.0569	No
28	PRKAG1	6450091	3321	0.096	0.0581	No
29	TCF12	3610324 7000156	3512	0.081	0.0493	No
30	SLC4A7	2370056	3593	0.076	0.0464	No
31	CDH13	5130368 5340114	3843	0.061	0.0341	No
32	CNKSR1	730528 3390672	3844	0.061	0.0352	No
33	CACNB2	1500095 7330707	3848	0.061	0.0362	No
34	CNTN6	2630711	3872	0.060	0.0361	No
35	SLC25A18	4540047	3913	0.058	0.0350	No
36	RPS6KB1	1450427 5080110 6200563	3919	0.057	0.0359	No
37	SOX9	5720681	4167	0.047	0.0234	No
38	NR2F2	3170609 3310577	4398	0.040	0.0116	No
39	LUZP1	940075 4280458 6180070	4507	0.036	0.0065	No
40	PRIMA1	1500673 6760671	4508	0.036	0.0071	No
41	PDE4D	2470528 6660014	4558	0.035	0.0051	No
42	ICAM4	6770053	4698	0.031	-0.0018	No
43	HOXA3	3610632 6020358	4725	0.031	-0.0026	No
44	MTMR4	4540524	4916	0.027	-0.0124	No
45	NCAM1	3140026	5032	0.025	-0.0182	No
46	JPH4	780020	5261	0.022	-0.0302	No
47	ICAM5	2350647	5305	0.021	-0.0321	No
48	PPARGC1A	4670040	5467	0.019	-0.0405	No
49	ITGA10	6330438	5477	0.019	-0.0406	No
50	ANGPT1	3990368 5130288 6770035	5577	0.018	-0.0456	No
51	FOXP2	3520561 4150372 4760524	5637	0.018	-0.0485	No
52	PEA15	4590685	5661	0.018	-0.0494	No
53	GAS2	1340082	5683	0.017	-0.0502	No
54	OTP	2630070	5767	0.017	-0.0544	No
55	RORA	380164 5220215	5777	0.016	-0.0546	No
56	BAI3	940692	5943	0.015	-0.0632	No
57	ZFPM2	460072	5951	0.015	-0.0633	No
58	HOXC8	6220050	5955	0.015	-0.0632	No
59	MAP2K7	2260086	5971	0.015	-0.0637	No
60	PI15	3840133	6088	0.014	-0.0698	No
61	NFIA	2760129 5860278	6211	0.013	-0.0761	No
62	HOXA9	610494 4730040 5130601	6215	0.013	-0.0760	No
63	GPR17	5890671	6295	0.013	-0.0801	No
64	HOXD11	2260242	6305	0.013	-0.0803	No
65	ZIC1	670113	6324	0.013	-0.0811	No
66	DDR2	7050273	6525	0.011	-0.0917	No
67	DCX	130075 5360025 7050673	6737	0.010	-0.1030	No
68	CGN	5890139 6370167 6400537	6781	0.010	-0.1051	No
69	ASB4	2100064 3060059	6863	0.010	-0.1093	No
70	ZIC3	380020	6897	0.009	-0.1109	No
71	HOXB8	3710450	6909	0.009	-0.1114	No
72	TBR1	5130053	6952	0.009	-0.1135	No
73	HIST1H1E	6980706	7116	0.008	-0.1222	No
74	KLF15	4230164	7123	0.008	-0.1223	No
75	MEF2C	670025 780338	7171	0.008	-0.1247	No
76	CDH6	4730541	7480	0.007	-0.1413	No
77	NGEF	3190538	7482	0.007	-0.1412	No
78	PBX1	6660301	7635	0.007	-0.1493	No
79	GPR20	6620601	7698	0.006	-0.1526	No
80	BNC2	4810603	7836	0.006	-0.1599	No
81	SP8	4060576	7993	0.005	-0.1683	No
82	C1QTNF7	2970619	8031	0.005	-0.1702	No
83	CACNG3	520093	8072	0.005	-0.1723	No
84	HOXC4	1940193	8098	0.005	-0.1735	No
85	SH3BGRL2	1780239	8105	0.005	-0.1738	No
86	HOXA10	6110397 7100458	8235	0.004	-0.1807	No
87	PROCR	4920687	8300	0.004	-0.1841	No
88	EBF2	940324	8358	0.004	-0.1871	No
89	KLF12	1660095 4810288 5340546 6520286	8475	0.004	-0.1933	No
90	ITSN1	2640577	8599	0.003	-0.1999	No
91	CLMN	1340446 1660433 2940670	8638	0.003	-0.2019	No
92	HOXD10	6100039	8737	0.003	-0.2072	No
93	DSCR1L1	940438	8803	0.003	-0.2107	No
94	PCDH8	2360047 4200452	8829	0.003	-0.2120	No
95	PLCD4	6450040	8912	0.003	-0.2164	No
96	DEPDC2	5220102	9068	0.002	-0.2247	No
97	TFEC	1170722	9435	0.001	-0.2446	No
98	CALN1	3610722	9683	0.000	-0.2580	No
99	TFB1M	2190110	9833	-0.000	-0.2661	No
100	PURA	3870156	9881	-0.000	-0.2686	No
101	HOXB3	520292	9888	-0.000	-0.2689	No
102	HIST1H1T	130632	9975	-0.001	-0.2736	No
103	HOXB6	4210739	10097	-0.001	-0.2801	No
104	DSPP	5890403	10126	-0.001	-0.2816	No
105	SOX15	2470603	10141	-0.001	-0.2824	No
106	NRXN3	1400546 3360471	10155	-0.001	-0.2831	No
107	GPRC5D	4760021	10208	-0.001	-0.2859	No
108	GRPR	6020170	10271	-0.001	-0.2892	No
109	PHF8	70722	10351	-0.002	-0.2935	No
110	PTHLH	5290739	10686	-0.002	-0.3115	No
111	SGK2	1850070	10708	-0.003	-0.3126	No
112	CDON	540204	11026	-0.004	-0.3298	No
113	BMP4	380113	11085	-0.004	-0.3329	No
114	SLC26A3	380750	11197	-0.004	-0.3388	No
115	GFRA3	6510609	11207	-0.004	-0.3392	No
116	CHRM1	4280619	11231	-0.004	-0.3404	No
117	TSGA10	450594 3130435 4920093	11342	-0.005	-0.3463	No
118	PHYHIP	1170377	11383	-0.005	-0.3483	No
119	MSR1	940538	11469	-0.005	-0.3529	No
120	NKX2-8	50022	11680	-0.006	-0.3641	No
121	RKHD3	6180471	11690	-0.006	-0.3645	No
122	EDN1	1770047	11775	-0.006	-0.3690	No
123	BDNF	2940128 3520368	11795	-0.006	-0.3699	No
124	POU3F1	3710022	11951	-0.007	-0.3782	No
125	HOXA6	2340333	11974	-0.007	-0.3792	No
126	TLR1	1410524	12168	-0.008	-0.3895	No
127	NEXN	1240017 5290047	12273	-0.008	-0.3950	No
128	ELAVL4	50735 3360086 5220167	12316	-0.009	-0.3971	No
129	CRYZL1	730022 2320044	12423	-0.009	-0.4027	No
130	DPF3	2650128 2970168	12571	-0.010	-0.4105	No
131	GREM1	3940180	12578	-0.010	-0.4107	No
132	SPAG7	4560524	12631	-0.010	-0.4133	No
133	MEIS1	1400575	12634	-0.010	-0.4132	No
134	CREB5	2320368	12683	-0.010	-0.4156	No
135	CPEB3	3940164	12861	-0.011	-0.4250	No
136	MRGPRF	4780746	13151	-0.013	-0.4404	No
137	DSG3	3940014	13184	-0.014	-0.4419	No
138	SOX5	2370576 2900167 3190128 5050528	13250	-0.014	-0.4452	No
139	DNAJB4	380195 2760372 3940735	13273	-0.014	-0.4461	No
140	GRK6	1500053	13347	-0.015	-0.4498	No
141	SOSTDC1	6760017	13548	-0.017	-0.4603	No
142	RARB	430139 1410138	13554	-0.017	-0.4603	No
143	PHACTR3	3850435 5900445	13813	-0.020	-0.4739	No
144	TRDN	1580411	13879	-0.021	-0.4770	No
145	IRX3	4200112	13886	-0.021	-0.4769	No
146	CTLA4	6590537	14189	-0.026	-0.4928	No
147	CDX2	3850349	14232	-0.027	-0.4946	No
148	RAB6B	5860121	14477	-0.032	-0.5072	No
149	JMJD1C	940575 2120025	14762	-0.040	-0.5219	No
150	BCL9	7100112	14909	-0.047	-0.5289	No
151	TCF1	5390022	15147	-0.061	-0.5406	No
152	TRAF4	3060041 4920528 6980286	15313	-0.073	-0.5482	No
153	LAMA3	1190131 5290239	15423	-0.082	-0.5526	No
154	ELMO3	110372 2640019	15459	-0.085	-0.5528	No
155	BPGM	5080520	15509	-0.089	-0.5538	No
156	ATF2	2260348 2480441	15845	-0.126	-0.5696	No
157	HIVEP3	3990551	15947	-0.136	-0.5725	No
158	PDLIM1	450100	15988	-0.142	-0.5720	No
159	ZIC4	1500082	16025	-0.146	-0.5712	No
160	PANK1	670091 6220605	16107	-0.159	-0.5726	No
161	BRUNOL4	4490452 5080451	16157	-0.165	-0.5721	No
162	RKHD1	6860577	16222	-0.174	-0.5723	No
163	TOP1	770471 4060632 6650324	16236	-0.176	-0.5696	No
164	CREM	840156 6380438 6660041 6660168	16320	-0.189	-0.5705	No
165	ARHGEF2	3360577	16369	-0.198	-0.5694	No
166	MAP4K3	5390551	16426	-0.209	-0.5685	No
167	MAP2K5	2030440	16563	-0.240	-0.5713	No
168	ADD3	4150739 5390600	16993	-0.347	-0.5880	No
169	HNRPA0	2680048	17155	-0.401	-0.5891	Yes
170	PTEN	3390064	17161	-0.403	-0.5818	Yes
171	BCL9L	6940053	17235	-0.427	-0.5776	Yes
172	WDR23	2030372	17322	-0.463	-0.5735	Yes
173	POLH	2690528	17472	-0.529	-0.5716	Yes
174	PREP	6220292	17518	-0.548	-0.5636	Yes
175	SOX4	2260091	17671	-0.637	-0.5598	Yes
176	HOXA7	5910152	17724	-0.670	-0.5499	Yes
177	GABARAP	1450286	17808	-0.719	-0.5408	Yes
178	TCTA	2680687	17919	-0.800	-0.5316	Yes
179	BRD2	1450300 5340484 6100605	17962	-0.833	-0.5181	Yes
180	IRF2BP1	3170019	18019	-0.891	-0.5042	Yes
181	GADD45A	2900717	18078	-0.966	-0.4891	Yes
182	AGPAT4	6040079	18093	-0.980	-0.4712	Yes
183	MAP3K3	610685	18187	-1.104	-0.4554	Yes
184	EVA1	5690538	18347	-1.472	-0.4361	Yes
185	HSD11B1	450066 5550408	18355	-1.488	-0.4082	Yes
186	MAP4K2	4200037	18402	-1.668	-0.3791	Yes
187	HBP1	2510102 3130010 4210619	18447	-1.783	-0.3477	Yes
188	CCR7	2060687	18570	-2.914	-0.2991	Yes
189	IL16	3850168	18571	-2.923	-0.2437	Yes
190	BCL6	940100	18572	-2.937	-0.1880	Yes
191	BTG1	4200735 6040131 6200133	18607	-4.199	-0.1102	Yes
192	RHOA	580142 5900131 5340450	18613	-5.837	0.0002	Yes