DatasetSet_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls
#absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls
#absentNotch_versus_normalThy_repos
Phenotypephenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in classnormalThy
GeneSetGCACTTT,MIR-17-5P,MIR-20A,MIR-106A,MIR-106B,MIR-20B,MIR-519D
Enrichment Score (ES)-0.5550622
Normalized Enrichment Score (NES)-1.5342325
Nominal p-value0.0
FDR q-value0.185505
FWER p-Value0.631
Table: GSEA Results Summary



Fig 1: Enrichment plot: GCACTTT,MIR-17-5P,MIR-20A,MIR-106A,MIR-106B,MIR-20B,MIR-519D   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SFRS250707 380593633.0790.0217No
2PPP3R11190041 15704871402.2640.0360No
3EGLN316604841572.1510.0527No
4RGMA24507111642.1130.0697No
5KLF938400221762.0590.0859No
6CDKN1A4050088 64007061882.0270.1019No
7SLC6A924705202761.5880.1101No
8E2F153600935131.1410.1065No
9FJX133900355481.0980.1136No
10ARHGEF334401566690.9560.1148No
11AHCTF170401007000.9240.1207No
12APP25100537300.9000.1265No
13FASTK2690053 4280288 4610551 63702927330.8960.1337No
14RBBP7430113 450450 23703098010.8380.1369No
15SMOC211701709880.7240.1326No
16TNFAIP1694059311810.6140.1270No
17NEK9344040212430.5840.1285No
18EIF4G23800575 686018413790.5220.1253No
19KIF23557011214360.5000.1263No
20CCND1460524 770309 3120576 698039814390.4990.1303No
21EFNB1297043315530.4540.1278No
22RPS6KA1412064715830.4430.1299No
23DDX11659067116010.4370.1325No
24ZNF148642040316770.4100.1317No
25CXXC6281016817910.3800.1286No
26SLC40A1237028618100.3710.1307No
27PHTF2659005320540.3040.1198No
28SFMBT12360450 237007021060.2880.1194No
29LAPTM4A45009221400.2810.1199No
30DAZAP2620010221410.2810.1222No
31RPS6KA3198070722280.2580.1196No
32SENP1610053723400.2340.1154No
33TOPORS406059223760.2270.1153No
34TRPS187010024530.2130.1129No
35TNFRSF21638010025020.2020.1119No
36CELSR22320148 622015225120.2010.1130No
37TGFBR21780711 1980537 655039826100.1830.1092No
38KPNA3704008826470.1780.1087No
39RAB22A110500 383070726710.1740.1089No
40TRIM361400600 1980082 513003726850.1720.1095No
41ANKFY1360309 539002127490.1610.1074No
42RAP2C169013227790.1570.1071No
43RBL1313037227840.1560.1082No
44ZBTB7A378009228000.1530.1086No
45SEMA4G589002629280.1350.1027No
46THRA6770341 110164 199060029310.1350.1037No
47YTHDF34540632 4670717 704060929380.1340.1045No
48MARCH86039729510.1330.1049No
49ASF1A705002029730.1310.1048No
50PBX31300424 3710577 618057530260.1260.1030No
51HABP484048731320.1140.0982No
52STC136016131850.1090.0962No
53SYAP1141050031910.1090.0968No
54TRIP1046043832240.1050.0959No
55L3MBTL33800113 666006832270.1040.0967No
56PPP2R2A2900014 570057532310.1040.0974No
57NR4A26027332890.0980.0950No
58ADAM9336041133260.0960.0938No
59SMAD5570049733660.0920.0925No
60CRY2629072233890.0910.0920No
61SS18L14610180 655006834040.0900.0920No
62PTPRO1940576 637033234150.0890.0921No
63PFN2730040 570002634730.0840.0897No
64SLC4A7237005635930.0760.0838No
65SAR1B251027337100.0690.0780No
66FGD1478002137210.0690.0780No
67KPNA2345011437620.0660.0763No
68ARID4B730754 666002637770.0650.0761No
69E2F350162 46018038000.0640.0754No
70PDGFRA294033238060.0630.0757No
71TBL1X640052438200.0620.0754No
72NPAS277067038950.0590.0719No
73KCNQ2130204 290291 586013239690.0550.0683No
74RABGAP1505039740210.0530.0659No
75CD69380167 473008840940.0500.0624No
76ANKRD13C527020241000.0500.0625No
77RHOC206024241300.0480.0613No
78TGOLN2492043341470.0480.0608No
79RNF6264003542980.0430.0530No
80POLQ1050053 219010243410.0410.0510No
81SNX1687044644270.0380.0466No
82BRMS1L611060944380.0380.0464No
83TBX3257067244430.0380.0465No
84HAS2536018144660.0370.0456No
85PCDHA11151025344830.0370.0450No
86MORF4L1319010045010.0370.0444No
87LUZP1940075 4280458 618007045070.0360.0444No
88PKIA407044145280.0360.0436No
89PANX2756012145410.0350.0432No
90ST8SIA2268008245450.0350.0434No
91KCNJ10226057745650.0350.0426No
92P2RX42060497 665016247120.0310.0348No
93RTN2448053847230.0310.0345No
94VPS26A1940494 572005947310.0310.0344No
95NFAT52510411 5890195 655015247330.0310.0346No
96ZFYVE96980288 710001747370.0300.0347No
97DPYSL5490033348140.0290.0308No
98ZDHHC1387003548470.0280.0292No
99ST6GALNAC3407056349660.0260.0230No
100ETV170735 2940603 508046350070.0260.0210No
101NBL1248002150100.0260.0211No
102RASD1245046350270.0250.0204No
103PPP3CA4760332 676009250290.0250.0206No
104LASS65890576 652013850340.0250.0205No
105PCDHA6780333 237028052290.0220.0101No
106NEUROG2542027853020.0210.0063No
107SASH1407027053460.0210.0041No
108ACSL4510020 1240041 3190050 4540500 557046354730.019-0.0026No
109ABHD24850504 684001055310.019-0.0056No
110APBB2513040356040.018-0.0094No
111PURB536013856140.018-0.0098No
112RABEP14760427 620046357120.017-0.0150No
113ARHGEF103120593 690067357170.017-0.0150No
114EPHA5234067157910.016-0.0189No
115ARHGAP12105018158280.016-0.0208No
116UBE2J1407013358810.016-0.0235No
117FNDC3A2690097 329004459350.015-0.0263No
118ZFPM246007259510.015-0.0270No
119OLFM3580112 1050072 407020460220.015-0.0307No
120PKD2467039060430.014-0.0317No
121MAPRE3705050462320.013-0.0419No
122QKI5220093 613004462760.013-0.0441No
123FBXL5510088 770075 297030963270.013-0.0468No
124FLT13830167 492043865140.011-0.0569No
125MAP3K9329070765380.011-0.0581No
126PHF63120632 399004168320.010-0.0741No
127NPAS3630408 461006668360.010-0.0742No
128MASTL380433 4480215 539030168380.010-0.0741No
129WDFY33610041 4560333 457027368390.010-0.0741No
130PLCB12570050 710010269380.009-0.0794No
131ZBTB4645044169730.009-0.0811No
132SOCS61170347 710028074090.007-0.1050No
133OXR12370039 319070674160.007-0.1052No
134PIK3R1473067174370.007-0.1063No
135RSBN1700048775440.007-0.1120No
136PLXNA17006675960.007-0.1148No
137JUB5860711 590050076690.006-0.1187No
138SLC17A7700003776720.006-0.1187No
139WEE1339007076960.006-0.1199No
140SMAD687050477150.006-0.1209No
141BNC2481060378360.006-0.1274No
142KCNMA1145040278990.006-0.1308No
143ATP1A211027879040.006-0.1310No
144FOXL2567053779460.005-0.1332No
145SERTAD22810673 684045079730.005-0.1345No
146KLF11684073979750.005-0.1346No
147SP8406057679930.005-0.1354No
148LHX8570034781240.005-0.1425No
149DNAJB946011481780.005-0.1454No
150PTPN4141004781930.005-0.1461No
151PTGFRN412052482210.005-0.1476No
152ZNF25677025382250.005-0.1477No
153M6PR2480458 3290593 384032482370.004-0.1483No
154BTG3705007982490.004-0.1488No
155TAOK2110575 638069282580.004-0.1493No
156PCDHA12281021582640.004-0.1495No
157VLDLR870722 3060047 5340452 655013183250.004-0.1527No
158VSX14610605 665011283260.004-0.1527No
159CALD11770129 194039783640.004-0.1547No
160PCDHA10383072583850.004-0.1558No
161RAPGEF4610056384730.004-0.1605No
162KLF121660095 4810288 5340546 652028684750.004-0.1605No
163SLC2A454044185450.004-0.1643No
164SSX2IP461017685560.004-0.1648No
165DNAJB62810309 557045186250.003-0.1685No
166NHLH1610045287450.003-0.1750No
167PAFAH1B25360546 686067288160.003-0.1789No
168EDG1420061988980.003-0.1833No
169LDLR567038689280.002-0.1848No
170PCDHA1940026 54048489630.002-0.1867No
171TMEM16F586000889990.002-0.1886No
172F3294018090390.002-0.1907No
173PCDHA3384040290470.002-0.1911No
174SLC1A2223052090660.002-0.1921No
175BTBD773028891310.002-0.1956No
176ANUBL1158011391350.002-0.1957No
177MMP24534015492040.002-0.1994No
178CNOT72450338 572039792900.001-0.2041No
179TNFSF11635020493120.001-0.2052No
180ANK2651054694390.001-0.2121No
181EPAS1529015695540.001-0.2184No
182ALX4387001995690.001-0.2191No
183BAMBI665046395890.001-0.2202No
184CCNT22100390 415056396050.001-0.2210No
185WAC5340390 591016496430.001-0.2230No
186OSBPL53840537 604028696540.000-0.2236No
187NKIRAS12510440 557067197310.000-0.2277No
188MAP3K122470373 64201629831-0.000-0.2332No
189PURA38701569881-0.000-0.2359No
190ABCA162901569882-0.000-0.2359No
191TNFSF1219404659892-0.000-0.2363No
192NRP24070400 5860041 66504469922-0.000-0.2379No
193HMGB329401689953-0.000-0.2396No
194PCYT1B17804029970-0.001-0.2405No
195BHLHB3345043810001-0.001-0.2421No
196GABPB26130450 705073510308-0.001-0.2589No
197PTPN387036910412-0.002-0.2645No
198NPAT3800594 467002610414-0.002-0.2646No
199SET665028610417-0.002-0.2647No
200PCAF2230161 2570369 655045110437-0.002-0.2657No
201SMAD743037710514-0.002-0.2698No
202COL4A3591007510617-0.002-0.2754No
203PTHLH529073910686-0.002-0.2791No
204ANKRD96025310694-0.003-0.2795No
205PCDHA5297034710716-0.003-0.2806No
206RAB102360008 589002010751-0.003-0.2825No
207PAK7383016410833-0.003-0.2869No
208EIF2C1690055110857-0.003-0.2881No
209SLC30A3185045111061-0.004-0.2992No
210SH3BP5710040811138-0.004-0.3034No
211STK38710011411216-0.004-0.3076No
212EIF5A2704013911261-0.004-0.3099No
213MYT1L5670369 666040311303-0.005-0.3122No
214RHOV586010011328-0.005-0.3134No
215MAT2B1690139 251070611381-0.005-0.3163No
216ATAD2870242 226068711466-0.005-0.3208No
217MAPK487014211473-0.005-0.3211No
218NTN4694039811487-0.005-0.3218No
219HLF237011311494-0.005-0.3221No
220PPARA206002611546-0.005-0.3248No
221FOXA1371060911619-0.006-0.3287No
222CCNJ87004711748-0.006-0.3357No
223GRM7423011011793-0.006-0.3381No
224DDX5940021 2630338 344014811830-0.006-0.3400No
225ATP2B2378039712061-0.007-0.3526No
226TRPV6401071712068-0.007-0.3528No
227SCML2329060312153-0.008-0.3574No
228RNF1281230300 567027312182-0.008-0.3588No
229MGEA5610001412244-0.008-0.3621No
230HIF1A567060512286-0.008-0.3643No
231PCDHA7185001912292-0.008-0.3645No
232YES1610005012323-0.009-0.3661No
233LHX62360731 336039712331-0.009-0.3664No
234SLC24A4210048712351-0.009-0.3674No
235E2F5586057512458-0.009-0.3731No
236SUMF173005012581-0.010-0.3797No
237TRIM3557015612623-0.010-0.3819No
238CREB5232036812683-0.010-0.3851No
239FAM60A394009212782-0.011-0.3903No
240FBXW11645063212795-0.011-0.3909No
241PGBD5119004712838-0.011-0.3931No
242PAPOLA4200286 485011212858-0.011-0.3941No
243SLITRK3591004112921-0.012-0.3974No
244NR4A32900021 5860095 591003912999-0.012-0.4015No
245BMPR25340066 696032813057-0.013-0.4045No
246HMGA22940121 3390647 5130279 640013613058-0.013-0.4044No
247EREG50519 492012913196-0.014-0.4118No
248NUP35534040813229-0.014-0.4135No
249STYX109035813260-0.014-0.4150No
250MYO1D676029213303-0.015-0.4172No
251MAP3K56020041 638016213343-0.015-0.4192No
252WNK3406005313431-0.016-0.4239No
253PLEKHA3508006813436-0.016-0.4240No
254RB1CC1510494 710007213448-0.016-0.4244No
255BCL2L22760692 677073913454-0.016-0.4246No
256DUSP8665003913522-0.017-0.4281No
257PRRX14120193 448039013531-0.017-0.4284No
258DDHD13450241 3940523 638015613620-0.018-0.4331No
259CYP26B1263014213635-0.018-0.4337No
260MAP3K238027013729-0.019-0.4387No
261SSFA2387013313931-0.022-0.4495No
262GNB54480736 6550722 677046313943-0.022-0.4499No
263VANGL138016213952-0.022-0.4502No
264TNKS1BP1704018414001-0.023-0.4527No
265PAFAH1B14230333 6420121 645006614002-0.023-0.4525No
266EPHA71190288 401027814056-0.024-0.4552No
267DCBLD2589033314090-0.024-0.4568No
268KIF5A51043514097-0.024-0.4569No
269ARID4A520156 105070714162-0.026-0.4602No
270NIPA138060014166-0.026-0.4602No
271RGL11500097 690045014208-0.026-0.4622No
272RAB11FIP1247033314214-0.027-0.4623No
273EFTUD1536073614298-0.028-0.4666No
274FGD53520438 406050014330-0.028-0.4681No
275PARD6B412060014406-0.030-0.4719No
276MKNK21240020 527009214508-0.032-0.4772No
277DPYSL22100427 3130112 570032414586-0.035-0.4812No
278ARHGAP12810010 527006414636-0.036-0.4836No
279NR2C2610009714667-0.037-0.4849No
280NANOS1130040214709-0.038-0.4868No
281CSNK1G1840082 1230575 394064714719-0.039-0.4870No
282CNOT42320242 676070614751-0.040-0.4884No
283CFL2380239 620036814783-0.041-0.4898No
284FURIN412016814787-0.042-0.4896No
285PLAG11450142 3870139 652003914865-0.045-0.4934No
286MINK1586064714867-0.045-0.4931No
287EPHA446075014940-0.049-0.4967No
288CRIM113049114979-0.051-0.4984No
289CHD9430037 2570129 542039815012-0.053-0.4997No
290DLGAP21090348 684015415070-0.056-0.5024No
291YPEL2556060915092-0.058-0.5030No
292PHF14010577 642005315233-0.067-0.5102No
293SNF1LK611040315238-0.067-0.5098No
294XRN1590009315334-0.074-0.5144No
295BCL2L11780044 420060115372-0.078-0.5158No
296LACE1141007915498-0.088-0.5220No
297TAL1704023915516-0.090-0.5222No
298CLOCK1410070 2940292 339007515517-0.090-0.5214No
299NEUROG138034115544-0.094-0.5221No
300EZH1705041115616-0.102-0.5252No
301MARK473051915698-0.110-0.5287No
302TIMP2478060915713-0.111-0.5286No
303DMTF15910047 1570497 2480100 662023915733-0.113-0.5287No
304LIMK1508006415739-0.114-0.5280No
305AKT31580270 329027815741-0.114-0.5272No
306RPS6KA52120563 704054615771-0.117-0.5278No
307STX64850750 677027815798-0.120-0.5282No
308HN1336015615821-0.123-0.5284No
309MAP3K8294028615842-0.125-0.5285No
310SKI659000815894-0.130-0.5302No
311OSR1150002515952-0.137-0.5322No
312SPRY4157059415960-0.138-0.5315No
313FRMD4A219017616054-0.150-0.5354No
314ORMDL3134071116084-0.156-0.5357No
315USP3206033216096-0.157-0.5350No
316RKHD1686057716222-0.174-0.5405No
317RAB5B130397 1980273 690073116259-0.179-0.5410No
318BICD2109041116324-0.190-0.5429No
319ATXN1555015616338-0.192-0.5421No
320PKD1604067116353-0.195-0.5412No
321CRK1230162 478012816406-0.206-0.5424No
322DEDD640013116508-0.225-0.5461No
323WDR42A620001916625-0.253-0.5504No
324MAPRE1329003716632-0.254-0.5487No
325DNM250176 317027916680-0.265-0.5491No
326ZHX2290045216790-0.289-0.5527Yes
327PERQ1134016416803-0.295-0.5509Yes
328DYNC1LI25033816843-0.305-0.5506Yes
329RRM26350059 694016216853-0.307-0.5486Yes
330SSH236005616893-0.318-0.5481Yes
331FBXO21655007016921-0.326-0.5469Yes
332MECP2194045017044-0.360-0.5507Yes
333PKNOX1421045217074-0.371-0.5492Yes
334ITCH1410731 570002217123-0.392-0.5487Yes
335GOSR173027917151-0.401-0.5469Yes
336PTEN339006417161-0.403-0.5441Yes
337TNRC6A1240537 6130037 620001017167-0.403-0.5411Yes
338HECA331061217186-0.409-0.5387Yes
339ENPP5178033817203-0.414-0.5362Yes
340TSG10177014817246-0.433-0.5350Yes
341WDR372630519 684034717257-0.436-0.5320Yes
342NCOA3454019517271-0.441-0.5291Yes
343RB1590033817295-0.453-0.5266Yes
344SQSTM1655005617307-0.456-0.5235Yes
345CCNG2319009517333-0.468-0.5211Yes
346TUSC2158025317392-0.492-0.5202Yes
347SEMA4B11034717403-0.498-0.5167Yes
348MKRN1141009717417-0.502-0.5133Yes
349ATG16L1539029217489-0.535-0.5128Yes
350MAP3K14589043517492-0.536-0.5086Yes
351GAB1297015617503-0.540-0.5047Yes
352ZDHHC9394020417505-0.541-0.5003Yes
353MTMR31050014 492018017564-0.570-0.4988Yes
354SRPK145011017581-0.581-0.4950Yes
355SOX4226009117671-0.637-0.4947Yes
356ANKRD5087054317719-0.668-0.4918Yes
357ULK1610031517720-0.669-0.4863Yes
358IRF12340152 3450592 6290121 698057717795-0.709-0.4846Yes
359FOXJ2245044117804-0.717-0.4791Yes
360DUSP2237018417814-0.722-0.4737Yes
361MAP3K11700003917815-0.725-0.4678Yes
362RUNX1384071117835-0.736-0.4628Yes
363NDEL1237046517853-0.750-0.4576Yes
364PPP6C245067017869-0.759-0.4523Yes
365FEM1C60300 6130717 698016417876-0.765-0.4463Yes
366ARHGEF11178028817883-0.773-0.4403Yes
367CAMTA2399007517901-0.786-0.4348Yes
368NAGK730041 3170086 589005317979-0.847-0.4321Yes
369STAT3460040 371034118021-0.893-0.4271Yes
370DYRK1A319018118042-0.921-0.4207Yes
371NEDD4L638036818070-0.959-0.4143Yes
372UBE3C314067318089-0.976-0.4073Yes
373CIC637016118149-1.044-0.4020Yes
374CCND2534016718184-1.101-0.3949Yes
375MAP3K361068518187-1.104-0.3860Yes
376ZFYVE26686015218188-1.106-0.3769Yes
377IHPK1134005318237-1.184-0.3699Yes
378SORL163020418266-1.262-0.3611Yes
379EGR2380040318301-1.337-0.3521Yes
380MCL1166067218315-1.362-0.3416Yes
381BCL11B268067318339-1.434-0.3312Yes
382PLAGL2177014818356-1.489-0.3199Yes
383LRRIQ23990064 6370673 638037218370-1.543-0.3080Yes
384ARL4C119027918378-1.566-0.2956Yes
385EHD3536048418394-1.640-0.2830Yes
386ARHGEF18212027918407-1.673-0.2700Yes
387PLEKHM11050161 199075018412-1.692-0.2564Yes
388RBL2580446 140067018429-1.740-0.2430Yes
389MAPK92060273 3780209 407039718430-1.744-0.2288Yes
390HBP12510102 3130010 421061918447-1.783-0.2151Yes
391LRIG1105013618478-1.980-0.2005Yes
392BNIP21410475 677008818487-2.026-0.1844Yes
393RASSF22480079 572054618520-2.347-0.1670Yes
394TLE41450064 150051918558-2.750-0.1465Yes
395ELK3460377 1400762 371049718561-2.759-0.1241Yes
396SMOC184003918589-3.340-0.0983Yes
397HRBL1850102 3830253 478017618611-5.676-0.0530Yes
398MIDN2260132 522037718616-6.5120.0000Yes
Table: GSEA details [plain text format]



Fig 2: GCACTTT,MIR-17-5P,MIR-20A,MIR-106A,MIR-106B,MIR-20B,MIR-519D   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GCACTTT,MIR-17-5P,MIR-20A,MIR-106A,MIR-106B,MIR-20B,MIR-519D: Random ES distribution   
Gene set null distribution of ES for GCACTTT,MIR-17-5P,MIR-20A,MIR-106A,MIR-106B,MIR-20B,MIR-519D