Details for gene set SANSOM_APC_LOSS5

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	SANSOM_APC_LOSS5_UP
Enrichment Score (ES)	0.7141429
Normalized Enrichment Score (NES)	1.5847371
Nominal p-value	0.0
FDR q-value	0.10542534
FWER p-Value	0.763

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	GNL3	4050338 4810500	49	3.279	0.0952	Yes
2	NOL5	580731	117	2.416	0.1636	Yes
3	EIF1	5080100	223	1.814	0.2121	Yes
4	DDIT4	2570408	281	1.582	0.2562	Yes
5	TXNL4A	4120286 6510242	285	1.576	0.3031	Yes
6	DDX21	6100446	313	1.509	0.3466	Yes
7	HK2	2640722	384	1.365	0.3835	Yes
8	NCL	2360463 4540279	407	1.334	0.4221	Yes
9	ETF1	6770075	472	1.218	0.4550	Yes
10	CIRH1A	2340372	550	1.097	0.4836	Yes
11	NSUN2	2120193	570	1.071	0.5145	Yes
12	PRKRIR	2370402	640	0.994	0.5404	Yes
13	GRWD1	6350528	676	0.946	0.5667	Yes
14	GNL2	6620022	699	0.925	0.5931	Yes
15	SLC27A1	6110093	770	0.867	0.6152	Yes
16	COPS2	3060142	862	0.804	0.6343	Yes
17	UTP14A	6590048	959	0.744	0.6513	Yes
18	FTSJ3	3140100	991	0.723	0.6712	Yes
19	SMYD5	6220025	1137	0.639	0.6824	Yes
20	PES1	2470427	1195	0.610	0.6975	Yes
21	EIF4G2	3800575 6860184	1379	0.522	0.7032	Yes
22	PRIM2A	7000692	1452	0.495	0.7141	Yes
23	CDCA7	3060097	2549	0.194	0.6608	No
24	CDK9	630707	2725	0.165	0.6563	No
25	FUSIP1	520082 5390114	2804	0.153	0.6566	No
26	ADAM8	450347 5670609	3228	0.104	0.6369	No
27	TNFRSF19	3870731 6940730	3626	0.074	0.6177	No
28	RNF4	580286 1400152	3756	0.066	0.6127	No
29	ORC2L	1990470 6510019	3784	0.065	0.6132	No
30	LAMC2	450692 2680041 4200059 4670148	4016	0.053	0.6023	No
31	MYC	380541 4670170	4075	0.051	0.6007	No
32	CD24	1780091	4301	0.043	0.5898	No
33	2300002G24RIK	2320040	4477	0.037	0.5815	No
34	9630050M13RIK	2370086	4538	0.035	0.5793	No
35	OLFR91	6290020	4544	0.035	0.5801	No
36	SYNCRIP	1690195 3140113 4670279	5035	0.025	0.5544	No
37	ZRF1	6020181 6510484	5165	0.023	0.5481	No
38	CEBPZ	2970053 2680068	5355	0.021	0.5386	No
39	EPHB3	6650341	6035	0.015	0.5024	No
40	SEMA3C	7000020	6245	0.013	0.4915	No
41	PLA2G12A	1740463 4010066 4050348	6441	0.012	0.4813	No
42	KCND2	1170128 2100112	6883	0.009	0.4578	No
43	PTBP2	1240398	6967	0.009	0.4536	No
44	RIN2	2450184	7082	0.009	0.4477	No
45	CITED1	2350670	7176	0.008	0.4429	No
46	REPS1	2320603 2510333	8095	0.005	0.3935	No
47	PLA2G2A	3190458	9357	0.001	0.3256	No
48	ZFP97	520324	9871	-0.000	0.2979	No
49	1110014J01RIK	1980332	10077	-0.001	0.2868	No
50	FOXA2	540338 5860441	10409	-0.002	0.2690	No
51	HELLS	4560086 4810025	10446	-0.002	0.2672	No
52	ANP32B	940095 2450494 4200368	10492	-0.002	0.2648	No
53	PKP1	1500433	10755	-0.003	0.2507	No
54	NUP54	940546 2360156 4060278	11083	-0.004	0.2332	No
55	KCNQ1	1580050 6860441	11275	-0.004	0.2230	No
56	FGFR4	2650072	11343	-0.005	0.2195	No
57	MMP7	1780497	11591	-0.006	0.2064	No
58	TSPAN12	4120010	11790	-0.006	0.1959	No
59	RNF149	5270494	12152	-0.008	0.1766	No
60	ZBTB17	6220082	12314	-0.009	0.1682	No
61	TGFBR1	1400148 4280020 6550711	12577	-0.010	0.1544	No
62	BTC	3190133	12595	-0.010	0.1538	No
63	MYO1B	770372	12743	-0.011	0.1461	No
64	FAM60A	3940092	12782	-0.011	0.1444	No
65	2810037C14RIK	5290575	14053	-0.024	0.0766	No
66	KIF5A	510435	14097	-0.024	0.0750	No
67	MDFI	6200041	14358	-0.029	0.0619	No
68	CD44	3990072 4850671 5860411 6860148 7050551	14405	-0.030	0.0603	No
69	HDC	4150463	14496	-0.032	0.0564	No
70	KIF20A	2650050	14661	-0.037	0.0486	No
71	IFIT2	4810735	14706	-0.038	0.0474	No
72	HNRPAB	540504	15300	-0.072	0.0175	No
73	ZZZ3	780133 2320239 2640452 5080706 6550341	15397	-0.080	0.0147	No
74	TIAM1	5420288	15730	-0.113	0.0002	No
75	SRR	1190465 3800494	16016	-0.145	-0.0109	No
76	MAP4K4	2360059	16313	-0.188	-0.0212	No
77	ZFP90	580121	16404	-0.205	-0.0200	No
78	FEM1B	1230110	16966	-0.339	-0.0401	No
79	4930573I19RIK	5270402	17652	-0.624	-0.0585	No
80	SOX4	2260091	17671	-0.637	-0.0404	No
81	1190002H23RIK	4480128	18037	-0.912	-0.0329	No
82	ETS2	360451	18501	-2.149	0.0062	No