Details for gene set PENG_RAPAMYCIN

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	PENG_RAPAMYCIN_DN
Enrichment Score (ES)	0.6556818
Normalized Enrichment Score (NES)	1.5651628
Nominal p-value	0.0015923567
FDR q-value	0.123448245
FWER p-Value	0.899

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PFKM	1990156 5720168	15	4.372	0.0517	Yes
2	EIF3S9	2030068 2120044	125	2.340	0.0739	Yes
3	TCP1	2450100 5130524	144	2.239	0.0999	Yes
4	SLC7A5	3310746	167	2.097	0.1239	Yes
5	SRM	1850097 2480162	192	2.000	0.1466	Yes
6	SLC29A1	2970379	197	1.935	0.1696	Yes
7	TFRC	4050551	244	1.692	0.1875	Yes
8	DDX21	6100446	313	1.509	0.2019	Yes
9	CCT6A	2350368	366	1.398	0.2159	Yes
10	CTSC	2230739 4670408	368	1.397	0.2326	Yes
11	RTN4	50725 630647 870097 870184	377	1.381	0.2488	Yes
12	C1QBP	3170452	408	1.328	0.2631	Yes
13	EXTL3	540309 3130215 5860500	426	1.306	0.2779	Yes
14	ETF1	6770075	472	1.218	0.2901	Yes
15	RARS	380390	485	1.187	0.3037	Yes
16	EIF2B2	4290048	490	1.174	0.3176	Yes
17	AATF	5220575	518	1.134	0.3298	Yes
18	DDX3X	2190020	528	1.119	0.3427	Yes
19	MRPL12	3120112	555	1.090	0.3544	Yes
20	ATF5	5670685	567	1.080	0.3668	Yes
21	GM2A	430095	569	1.074	0.3796	Yes
22	NOL5A	5570139	571	1.069	0.3924	Yes
23	CYC1	2850546	605	1.037	0.4031	Yes
24	PSMD14	5690593	667	0.958	0.4113	Yes
25	FASN	430717	680	0.942	0.4220	Yes
26	NARS	1660722	729	0.900	0.4302	Yes
27	IFI30	730309 2940500	750	0.884	0.4397	Yes
28	CCT4	6380161	752	0.883	0.4503	Yes
29	NOL1	4570576 4920044	795	0.842	0.4581	Yes
30	UBE2M	2450215	810	0.835	0.4674	Yes
31	GCN5L2	2340609	821	0.827	0.4768	Yes
32	PA2G4	2030463	823	0.827	0.4867	Yes
33	HSPE1	3170438	845	0.815	0.4953	Yes
34	CYCS	2030072	883	0.787	0.5028	Yes
35	BCS1L	5360102	927	0.763	0.5096	Yes
36	FKBP4	870035	954	0.748	0.5172	Yes
37	TIMM17A	130092	989	0.723	0.5240	Yes
38	AHSA1	2030520	1045	0.688	0.5293	Yes
39	IDH3A	460332	1047	0.687	0.5375	Yes
40	ASNS	110368 7100687	1053	0.684	0.5455	Yes
41	CSE1L	3850086	1079	0.665	0.5521	Yes
42	NME1	770014	1159	0.629	0.5554	Yes
43	PSMB5	6290242	1199	0.608	0.5606	Yes
44	SCD	2680441	1212	0.599	0.5671	Yes
45	SF3A3	6660603	1233	0.589	0.5731	Yes
46	PSMD8	630142	1283	0.564	0.5772	Yes
47	CTPS	70451 1740132	1308	0.554	0.5826	Yes
48	GLO1	7040692	1336	0.541	0.5876	Yes
49	EIF4G2	3800575 6860184	1379	0.522	0.5916	Yes
50	PITPNB	5130039	1385	0.520	0.5976	Yes
51	ETFA	50347 5690040 6370044	1425	0.503	0.6015	Yes
52	NMT1	5810152	1508	0.471	0.6028	Yes
53	MRPS12	4210707 6110341	1531	0.462	0.6071	Yes
54	GSPT1	5420050	1564	0.449	0.6108	Yes
55	PRDX3	1690035	1609	0.434	0.6136	Yes
56	CCT5	1050670	1616	0.431	0.6185	Yes
57	GORASP2	2970059 4060309 7040706	1706	0.404	0.6185	Yes
58	RAE1	7050121	1747	0.395	0.6211	Yes
59	S100A4	3780113	1752	0.393	0.6256	Yes
60	TOMM40	6110017	1827	0.365	0.6260	Yes
61	ICT1	430138	1840	0.362	0.6297	Yes
62	CDC25A	3800184	1889	0.350	0.6313	Yes
63	USP10	2030736 2450333	1890	0.349	0.6355	Yes
64	CCNC	3390750	1898	0.347	0.6392	Yes
65	AK2	4590458 4760195 6110097	1935	0.334	0.6413	Yes
66	PSMC2	7040010	1952	0.329	0.6444	Yes
67	MORF4L2	6450133	2024	0.312	0.6443	Yes
68	UBE2L3	1690707 5900242	2032	0.311	0.6477	Yes
69	EIF4G1	4070446	2101	0.290	0.6475	Yes
70	CCT2	1690113	2171	0.272	0.6470	Yes
71	DHCR24	840600 1050672 6290097	2231	0.257	0.6469	Yes
72	EMP3	1500722 1570039	2267	0.251	0.6480	Yes
73	HYOU1	3060465	2313	0.240	0.6484	Yes
74	EEF1E1	4540711	2389	0.225	0.6471	Yes
75	TIMM44	4670746 4730050	2399	0.222	0.6493	Yes
76	MLF2	1940176	2423	0.219	0.6506	Yes
77	WBSCR22	3130070 4120551 5570433	2548	0.194	0.6462	Yes
78	COPB2	610154	2555	0.193	0.6482	Yes
79	NDUFA9	2260280	2579	0.189	0.6493	Yes
80	TRIP13	6860341	2583	0.189	0.6514	Yes
81	PGAM1	2570133	2585	0.188	0.6536	Yes
82	TUBG1	3140204	2606	0.184	0.6547	Yes
83	KPNA3	7040088	2647	0.178	0.6547	Yes
84	BTK	3130044	2668	0.174	0.6557	Yes
85	COX7B	2340504	2716	0.166	0.6551	No
86	NUP98	2850465	2748	0.161	0.6554	No
87	HSPA5	5130671	2874	0.143	0.6503	No
88	IDH3B	5690070	2933	0.135	0.6488	No
89	YARS	70739	3021	0.126	0.6456	No
90	BMP1	380594 2940576 3710593	3125	0.115	0.6414	No
91	PPP2R2A	2900014 5700575	3231	0.104	0.6370	No
92	CHUK	7050736	3349	0.094	0.6317	No
93	DAP3	1660528 2120039 5420593	3361	0.093	0.6323	No
94	COX11	1580121	3367	0.092	0.6331	No
95	TARS	50440 1340086	3412	0.089	0.6318	No
96	PPIB	4280450	3468	0.084	0.6298	No
97	SDHB	3120398 4780113 3710435	3520	0.081	0.6280	No
98	CALU	2680403 3520056 4610348 5720176 6130121	3533	0.079	0.6283	No
99	RBBP6	2320129	3567	0.078	0.6275	No
100	SLC3A2	5270358	3583	0.077	0.6276	No
101	RAB1A	2370671	3690	0.070	0.6227	No
102	ATP1B3	6040128	3715	0.069	0.6222	No
103	MAPKAPK3	630520	4093	0.050	0.6024	No
104	ARF1	3840291	4259	0.044	0.5939	No
105	SLC1A5	670133 3140020	4295	0.043	0.5926	No
106	AMD1	6290128	4428	0.038	0.5859	No
107	RPS26	510139	4601	0.034	0.5769	No
108	PTBP1	4070736	4692	0.032	0.5724	No
109	RNASEH1	3840575	4703	0.031	0.5723	No
110	ATP5G3	4230551	4810	0.029	0.5669	No
111	SYNCRIP	1690195 3140113 4670279	5035	0.025	0.5550	No
112	PGK1	1570494 630300	5330	0.021	0.5394	No
113	PPIF	1740059	5482	0.019	0.5314	No
114	VCP	5340168	5580	0.018	0.5264	No
115	PICALM	1940280	5596	0.018	0.5258	No
116	IDI1	1450736	6337	0.012	0.4858	No
117	PTDSS1	6020215	7093	0.009	0.4450	No
118	PTRF	2260204	7393	0.007	0.4289	No
119	DNAJA1	1660010 2320358 6840136	7468	0.007	0.4249	No
120	HSPA8	2120315 1050132 6550746	7647	0.007	0.4154	No
121	ACVRL1	3290600	8296	0.004	0.3803	No
122	INPP5E	6100619	8590	0.004	0.3644	No
123	POLR2B	3780138	8833	0.003	0.3513	No
124	BCAP31	1190520	8867	0.003	0.3496	No
125	ARMET	5130670	9007	0.002	0.3421	No
126	UCHL1	1230066	9278	0.001	0.3275	No
127	HCCS	670397 3170341	9717	0.000	0.3037	No
128	PHB	2260739	9723	0.000	0.3035	No
129	GTF2A2	2230184	10188	-0.001	0.2783	No
130	SREBF1	4780333	10333	-0.002	0.2705	No
131	BYSL	3170110	10661	-0.002	0.2528	No
132	WDR18	6020102	10852	-0.003	0.2426	No
133	TDG	2900358 2940079	11077	-0.004	0.2305	No
134	PSMD5	3940139 4570041	11082	-0.004	0.2303	No
135	MYCBP	4280528	11560	-0.005	0.2045	No
136	RTCD1	7000041	12082	-0.008	0.1763	No
137	MMP15	5900717	12433	-0.009	0.1575	No
138	PAPOLA	4200286 4850112	12858	-0.011	0.1346	No
139	P2RX5	5570427 6130435	13474	-0.016	0.1015	No
140	WNT10B	510050	13648	-0.018	0.0923	No
141	CAPZA2	110427 4590064	13855	-0.021	0.0814	No
142	GCDH	2190324 4280347	14049	-0.024	0.0712	No
143	SLC39A14	670300 1400093 1990711	14439	-0.031	0.0505	No
144	SNRPA1	1050735 6110131	14440	-0.031	0.0509	No
145	ATP6V0C	1780609	14560	-0.034	0.0448	No
146	PSMD11	2340538 6510053	15175	-0.063	0.0123	No
147	RABGGTB	3120037	15511	-0.090	-0.0048	No
148	ACAT2	2680400 3610440	15565	-0.097	-0.0065	No
149	EIF2B4	5270082	15735	-0.114	-0.0143	No
150	NP	2630577 3120142 5670068 6290039	16038	-0.149	-0.0289	No
151	EBNA1BP2	50369 1400433 6040019	16145	-0.164	-0.0327	No
152	HSPA4	1050170 3450309	16275	-0.182	-0.0375	No
153	SQLE	50180 940092	16386	-0.201	-0.0410	No
154	RAB14	6860139	16472	-0.219	-0.0430	No
155	PTPN1	2650056	16523	-0.231	-0.0429	No
156	CHERP	1240594	16771	-0.286	-0.0529	No
157	ALDH4A1	2450450	16813	-0.297	-0.0515	No
158	NXF1	1570377	16850	-0.307	-0.0498	No
159	JTB	6980400	16882	-0.315	-0.0477	No
160	EBP	2760292	16885	-0.316	-0.0440	No
161	NDUFS3	1690136 5340528	16973	-0.341	-0.0446	No
162	NPM3	3610300	17096	-0.382	-0.0467	No
163	LIMK2	2650446 4050164	17130	-0.394	-0.0437	No
164	XPO6	3940019	17575	-0.577	-0.0609	No
165	ADRM1	670333 5690162	17736	-0.674	-0.0614	No
166	CDK4	540075 4540600	17845	-0.743	-0.0584	No
167	PIP5K1A	4560672	18136	-1.032	-0.0617	No
168	CD47	1850603	18145	-1.041	-0.0496	No
169	GTF3C1	1990368 4210037	18351	-1.475	-0.0430	No
170	XBP1	3840594	18444	-1.777	-0.0266	No
171	GOT2	4570164 5220450	18575	-2.988	0.0022	No