Details for gene set REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
Enrichment Score (ES)	0.52802217
Normalized Enrichment Score (NES)	1.7023268
Nominal p-value	0.0
FDR q-value	0.12642108
FWER p-Value	0.79

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	YBX1	1418624_at 1430720_at 1438064_at	2	6.215	0.0833	Yes
2	THOC4	1417724_at 1436211_at	4	5.589	0.1582	Yes
3	CCAR1	1436156_at 1436157_at 1453319_at	116	2.802	0.1907	Yes
4	SF4	1424381_at 1444699_at	228	2.263	0.2160	Yes
5	SFRS3	1416150_a_at 1416151_at 1416152_a_at 1454993_a_at	272	2.122	0.2425	Yes
6	SF3A1	1419087_s_at 1445719_at 1446687_at 1449333_at	445	1.691	0.2573	Yes
7	SFRS11	1427269_at 1430077_at 1439095_at 1452371_at	492	1.610	0.2768	Yes
8	NUP160	1418530_at 1444892_at	528	1.568	0.2962	Yes
9	CSTF1	1417117_at 1448597_at	550	1.538	0.3159	Yes
10	SFRS6	1416720_at 1416721_s_at 1447898_s_at 1448454_at	557	1.530	0.3361	Yes
11	SNRPA1	1417351_a_at 1417352_s_at 1417353_x_at	563	1.523	0.3563	Yes
12	SNRPD3	1422884_at 1422885_at 1449629_s_at	759	1.303	0.3649	Yes
13	SFRS7	1424033_at 1424883_s_at 1436871_at	792	1.274	0.3805	Yes
14	NUP54	1432539_a_at 1433580_at 1438951_x_at 1447253_x_at 1459651_s_at	858	1.219	0.3939	Yes
15	NCBP2	1423045_at 1423046_s_at 1450847_at	931	1.162	0.4062	Yes
16	PHF5A	1424170_at	1064	1.077	0.4146	Yes
17	CDC40	1442667_at 1445348_at 1453342_at 1457366_at	1114	1.048	0.4264	Yes
18	SF3A3	1423811_at	1223	0.989	0.4347	Yes
19	NUP43	1432187_at 1432188_s_at	1247	0.975	0.4467	Yes
20	METTL3	1423099_a_at	1434	0.873	0.4499	Yes
21	NUPL2	1424889_at 1456773_at	1526	0.839	0.4570	Yes
22	NUP155	1418727_at 1449200_at	1678	0.779	0.4606	Yes
23	NHP2L1	1416973_at	1888	0.705	0.4605	Yes
24	U2AF1	1422509_at	1914	0.697	0.4687	Yes
25	POLR2B	1433552_a_at	2004	0.670	0.4736	Yes
26	NUP93	1424291_at	2041	0.655	0.4807	Yes
27	GTF2F1	1417698_at 1417699_at	2117	0.636	0.4858	Yes
28	NUP37	1423969_at	2145	0.629	0.4930	Yes
29	NUP188	1427047_at 1442314_at	2209	0.610	0.4983	Yes
30	CSTF2	1419644_at 1419645_at 1455523_at	2246	0.601	0.5047	Yes
31	POLR2I	1428494_a_at	2258	0.598	0.5122	Yes
32	PABPN1	1415728_at 1422848_a_at 1422849_a_at 1422850_at	2261	0.598	0.5202	Yes
33	EFTUD2	1416557_a_at 1438835_a_at 1438836_at 1456107_x_at	2321	0.586	0.5253	Yes
34	FUS	1451285_at 1451286_s_at 1455831_at 1458801_at	2428	0.563	0.5280	Yes
35	MAGOH	1416212_at	2904	0.464	0.5125	No
36	POLR2L	1428296_at	3026	0.445	0.5129	No
37	CPSF1	1417665_a_at	3055	0.440	0.5175	No
38	NUP107	1426751_s_at	3117	0.432	0.5205	No
39	SNRPF	1428672_at	3145	0.428	0.5251	No
40	NUP153	1441689_at 1441733_s_at 1452176_at	3365	0.403	0.5204	No
41	SF3B2	1429362_a_at 1433461_at 1438637_x_at 1453123_at 1456040_at 1456352_a_at 1459836_x_at	3452	0.392	0.5218	No
42	SRRM1	1420934_a_at 1420935_a_at 1442330_at 1447447_s_at 1450045_at 1454689_at 1459828_at	3511	0.386	0.5243	No
43	POLR2D	1424258_at	3558	0.382	0.5273	No
44	SMC1A	1417830_at 1417831_at 1417832_at	3722	0.362	0.5247	No
45	POLR2C	1416341_at	5795	0.230	0.4329	No
46	SNRPA	1417274_at	5830	0.228	0.4344	No
47	SF3B1	1418561_at 1418562_at 1440818_s_at 1449138_at	6168	0.214	0.4219	No
48	POLR2H	1424473_at	6184	0.213	0.4240	No
49	SNRPB2	1426613_a_at 1452422_a_at	6202	0.212	0.4261	No
50	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	6484	0.201	0.4159	No
51	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	6535	0.199	0.4163	No
52	SF3A2	1450576_a_at 1455546_s_at	6777	0.190	0.4078	No
53	NUP214	1434351_at 1456503_at 1457815_at	7240	0.174	0.3890	No
54	POLR2A	1422311_a_at 1426242_at 1458710_at	7249	0.174	0.3910	No
55	EIF4E	1450909_at 1457489_at 1459371_at	7293	0.172	0.3913	No
56	SFRS9	1417727_at	7731	0.158	0.3734	No
57	POLR2F	1415754_at 1427402_at	8043	0.147	0.3612	No
58	POLR2G	1416270_at	8184	0.142	0.3567	No
59	DHX9	1425617_at 1425618_at 1451770_s_at	8415	0.136	0.3480	No
60	PAPOLA	1424216_a_at 1424217_at 1427544_a_at 1444015_at 1455836_at	9255	0.110	0.3110	No
61	SNRPD2	1452680_at	9683	0.097	0.2928	No
62	RNPS1	1437027_x_at 1437359_at 1437851_x_at 1438267_x_at 1448324_at	11848	0.035	0.1942	No
63	RBM5	1438069_a_at 1441319_at 1444618_at 1444971_at 1452186_at 1452187_at 1456262_at	12366	0.019	0.1708	No
64	PRPF4	1429724_at 1438481_at	12700	0.010	0.1557	No
65	RANBP2	1422621_at 1440104_at 1445883_at 1450690_at	14781	-0.067	0.0613	No
66	TXNL4A	1419179_at	14789	-0.067	0.0619	No
67	PCBP2	1421743_a_at 1435881_at	15007	-0.076	0.0530	No
68	SNRPE	1451294_s_at	15312	-0.091	0.0403	No
69	RBMX	1416177_at 1416354_at 1416355_at 1426863_at 1437847_x_at	15823	-0.117	0.0185	No
70	U2AF2	1417260_at	16178	-0.140	0.0042	No
71	SNRPB	1419260_a_at 1437193_s_at	16391	-0.155	-0.0034	No
72	PRPF6	1424036_at 1426026_at 1454789_x_at	16564	-0.168	-0.0090	No
73	POLR2J	1417720_at 1440065_at	16581	-0.169	-0.0075	No
74	CD2BP2	1417223_at 1417224_a_at 1448624_at	17067	-0.213	-0.0268	No
75	PCBP1	1448642_at	17210	-0.228	-0.0303	No
76	CSTF3	1424723_s_at 1443909_at	17258	-0.233	-0.0293	No
77	SFRS4	1448778_at	17648	-0.278	-0.0434	No
78	NUP35	1426447_at	17716	-0.287	-0.0426	No
79	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	17821	-0.299	-0.0434	No
80	PRPF8	1422453_at	18234	-0.358	-0.0574	No
81	PTBP1	1424874_a_at 1450443_at 1458284_at	19598	-0.644	-0.1112	No
82	GTF2F2	1426626_at 1443233_at	19799	-0.708	-0.1108	No
83	TPR	1426948_at 1426949_s_at 1456112_at 1456651_a_at	20048	-0.798	-0.1115	No
84	NFX1	1419752_at 1419753_at 1428248_at 1442397_at	20287	-0.885	-0.1105	No
85	NUP62	1415925_a_at 1415926_at 1437612_at 1438917_x_at 1447905_x_at 1448150_at	20398	-0.933	-0.1030	No
86	SLBP	1430058_at 1460168_at	21034	-1.397	-0.1134	No
87	SF3B3	1415985_at 1430075_at	21111	-1.484	-0.0969	No
88	POLR2E	1417138_s_at 1451093_at 1458326_at	21523	-2.147	-0.0870	No
89	RAE1	1429528_at 1444256_at 1459822_at	21858	-3.656	-0.0532	No
90	NUDT21	1417681_at 1428339_at 1437213_at 1455966_s_at	21891	-4.223	0.0020	No