Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.57350534
Normalized Enrichment Score (NES)	-1.7895626
Nominal p-value	0.0
FDR q-value	0.080186546
FWER p-Value	0.324

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	21	4.111	0.0363	No
2	PLCG1	1435149_at 1450360_at	85	3.055	0.0611	No
3	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	163	2.553	0.0808	No
4	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	348	1.891	0.0895	No
5	CEBPB	1418901_at 1427844_a_at	421	1.731	0.1019	No
6	UNC119	1418123_at	520	1.575	0.1117	No
7	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	587	1.492	0.1222	No
8	SHB	1434153_at	599	1.473	0.1350	No
9	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	954	1.144	0.1292	No
10	SKAP1	1437249_at 1440326_at 1440782_at 1441322_at 1441418_at 1441589_at 1456678_at	956	1.143	0.1395	No
11	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	1098	1.059	0.1427	No
12	PTPRC	1422124_a_at 1440165_at	1172	1.016	0.1485	No
13	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	1930	0.690	0.1201	No
14	RAP1A	1424139_at	2297	0.590	0.1087	No
15	PIK3R2	1418463_at	2595	0.525	0.0998	No
16	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	2641	0.515	0.1024	No
17	ARHGEF6	1429012_at 1442292_at	3401	0.399	0.0713	No
18	SHC1	1422853_at 1422854_at	3459	0.392	0.0722	No
19	NCK1	1421487_a_at 1424543_at 1447271_at	3679	0.366	0.0655	No
20	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	4804	0.281	0.0166	No
21	NFAM1	1425714_a_at 1428790_at	5182	0.260	0.0016	No
22	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	6746	0.192	-0.0682	No
23	GRB2	1418508_a_at 1449111_a_at	7353	0.170	-0.0945	No
24	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	8793	0.124	-0.1593	No
25	CREBBP	1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at	9321	0.108	-0.1824	No
26	RIPK2	1421236_at 1450173_at	11268	0.052	-0.2711	No
27	PTPN12	1422045_a_at 1439705_at 1450478_a_at 1450479_x_at 1455105_at 1459459_at	11557	0.044	-0.2839	No
28	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	12584	0.013	-0.3308	No
29	DUSP3	1425608_at 1434472_at 1456769_at	13163	-0.006	-0.3572	No
30	LAT	1460651_at	13703	-0.025	-0.3817	No
31	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	13859	-0.031	-0.3885	No
32	DNM2	1423629_at 1425135_a_at 1425136_x_at 1432004_a_at 1432005_at 1437938_x_at 1443150_at 1451057_x_at	14066	-0.038	-0.3976	No
33	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	14546	-0.057	-0.4190	No
34	SKAP2	1418895_at 1457097_at 1460623_at	15194	-0.086	-0.4479	No
35	KHDRBS1	1418628_at 1418630_at	15438	-0.098	-0.4582	No
36	ENAH	1421624_a_at 1424800_at 1424801_at 1431162_a_at 1442223_at 1446426_at 1458876_at	15451	-0.098	-0.4578	No
37	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	15765	-0.114	-0.4711	No
38	SLA2	1437504_at 1451492_at	15815	-0.117	-0.4723	No
39	MAP2K1	1416351_at	16004	-0.128	-0.4798	No
40	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	16103	-0.135	-0.4830	No
41	HOMER3	1424859_at	16277	-0.147	-0.4896	No
42	ZAP70	1422701_at 1439749_at 1440178_x_at	16343	-0.152	-0.4912	No
43	JUN	1417409_at 1448694_at	16418	-0.157	-0.4932	No
44	SRC	1423240_at 1450918_s_at	16472	-0.160	-0.4942	No
45	SOS1	1421884_at 1421885_at 1421886_at	16621	-0.172	-0.4994	No
46	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	16643	-0.175	-0.4988	No
47	TUBB2A	1427838_at	16700	-0.180	-0.4997	No
48	STK39	1419550_a_at 1419551_s_at 1431434_at 1445431_at	16807	-0.188	-0.5028	No
49	PTPN3	1443162_at 1455450_at	16870	-0.194	-0.5039	No
50	SOS2	1452281_at	17296	-0.238	-0.5212	No
51	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	17323	-0.241	-0.5203	No
52	FYB	1452117_a_at	17540	-0.266	-0.5277	No
53	FYN	1417558_at 1441647_at 1448765_at	17958	-0.320	-0.5439	No
54	WAS	1419631_at	18029	-0.327	-0.5442	No
55	PTPN22	1417995_at 1442820_at	18137	-0.342	-0.5460	No
56	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	18300	-0.366	-0.5501	No
57	PTPN11	1421196_at 1427699_a_at 1451225_at	18414	-0.381	-0.5518	No
58	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	18479	-0.392	-0.5512	No
59	PAG1	1423002_at 1440033_at 1443319_at 1456403_at	18495	-0.394	-0.5483	No
60	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	19044	-0.509	-0.5688	Yes
61	CD8A	1440164_x_at 1440811_x_at	19107	-0.522	-0.5669	Yes
62	DBNL	1460334_at	19196	-0.544	-0.5660	Yes
63	CD3D	1422828_at	19361	-0.586	-0.5682	Yes
64	ARHGEF7	1424482_at 1449066_a_at	19372	-0.590	-0.5633	Yes
65	GRAP2	1456432_at	19479	-0.614	-0.5626	Yes
66	SH2D2A	1449105_at	19519	-0.623	-0.5587	Yes
67	PTPN6	1456694_x_at 1460188_at	19706	-0.676	-0.5611	Yes
68	STAT5A	1421469_a_at 1450259_a_at	19785	-0.702	-0.5583	Yes
69	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	19957	-0.764	-0.5592	Yes
70	CD3G	1419178_at	20019	-0.787	-0.5549	Yes
71	CISH	1448724_at	20056	-0.801	-0.5493	Yes
72	PTK2B	1434653_at 1442437_at 1442927_at	20075	-0.810	-0.5427	Yes
73	FOS	1423100_at	20292	-0.887	-0.5446	Yes
74	LCP2	1418641_at 1418642_at	20335	-0.907	-0.5383	Yes
75	ARHGDIB	1426454_at	20392	-0.931	-0.5324	Yes
76	PRKCQ	1426044_a_at	20404	-0.934	-0.5245	Yes
77	ABI1	1423177_a_at 1423178_at 1450890_a_at	20430	-0.947	-0.5170	Yes
78	VASP	1451097_at	20520	-0.995	-0.5121	Yes
79	SH2D3C	1415886_at	20527	-1.002	-0.5033	Yes
80	CBLB	1437304_at 1455082_at 1458469_at	20562	-1.024	-0.4955	Yes
81	RAPGEF1	1421146_at 1427006_at 1441386_at	20679	-1.102	-0.4908	Yes
82	TRAT1	1427532_at 1437561_at	20681	-1.103	-0.4809	Yes
83	DEF6	1452796_at	20783	-1.171	-0.4749	Yes
84	DOCK2	1422808_s_at 1437282_at 1438334_at 1459382_at	20784	-1.172	-0.4643	Yes
85	VAV1	1422932_a_at	20810	-1.191	-0.4546	Yes
86	WASF2	1438683_at	20834	-1.206	-0.4447	Yes
87	JAK3	1425750_a_at 1446515_at	20860	-1.224	-0.4348	Yes
88	LAX1	1438687_at	20887	-1.250	-0.4246	Yes
89	CD3E	1422105_at 1445748_at	20918	-1.279	-0.4144	Yes
90	PSTPIP1	1424560_at	20969	-1.320	-0.4047	Yes
91	CBL	1434829_at 1446608_at 1450457_at 1455886_at	21039	-1.405	-0.3951	Yes
92	STAT5B	1422102_a_at 1422103_a_at	21046	-1.408	-0.3827	Yes
93	SH3BP2	1448328_at	21104	-1.474	-0.3719	Yes
94	GRAP	1429387_at	21273	-1.681	-0.3643	Yes
95	SIT1	1418751_at	21355	-1.800	-0.3517	Yes
96	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	21390	-1.864	-0.3364	Yes
97	CD5	1418353_at	21551	-2.194	-0.3238	Yes
98	TXK	1425785_a_at	21583	-2.284	-0.3045	Yes
99	CARD11	1430257_at 1435996_at	21653	-2.497	-0.2850	Yes
100	PRKD2	1434333_a_at 1434334_at 1436589_x_at 1437509_x_at 1456075_at	21676	-2.613	-0.2624	Yes
101	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	21696	-2.726	-0.2385	Yes
102	CD4	1419696_at 1427779_a_at	21725	-2.835	-0.2141	Yes
103	SLA	1420818_at 1420819_at 1441761_at 1447813_x_at	21756	-2.983	-0.1884	Yes
104	DTX1	1425822_a_at 1458643_at	21771	-3.048	-0.1614	Yes
105	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	21772	-3.051	-0.1337	Yes
106	GIT2	1423391_at 1432160_at 1435925_at	21792	-3.156	-0.1060	Yes
107	EVL	1434920_a_at 1440885_at 1445957_at 1450106_a_at 1456453_at 1458889_at	21831	-3.401	-0.0769	Yes
108	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21837	-3.479	-0.0456	Yes
109	CD247	1420716_at 1426079_at 1426396_at 1428059_at 1428060_at 1438392_at 1452539_a_at	21916	-5.509	0.0008	Yes