Details for gene set NUCLEAR

Table: GSEA Results Summary

Dataset	set03_truncNotch_versus_absentNotch
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	NUCLEAR_PART
Enrichment Score (ES)	-0.37084877
Normalized Enrichment Score (NES)	-1.9665552
Nominal p-value	0.0
FDR q-value	0.022748733
FWER p-Value	0.285

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SMARCB1	29	6.337	0.0063	No
2	BRE	30	6.230	0.0141	No
3	PSEN2	58	5.563	0.0196	No
4	HMGA1	184	4.595	0.0185	No
5	ERCC1	208	4.452	0.0228	No
6	DEDD2	238	4.355	0.0266	No
7	SF3A2	348	3.973	0.0256	No
8	ABL1	359	3.934	0.0300	No
9	GEMIN7	474	3.676	0.0283	No
10	HDAC5	476	3.673	0.0328	No
11	HRB	478	3.665	0.0374	No
12	PML	553	3.520	0.0377	No
13	BCL2	576	3.485	0.0408	No
14	EMD	630	3.386	0.0422	No
15	NAP1L1	646	3.356	0.0455	No
16	HTATIP	668	3.330	0.0486	No
17	DHCR7	672	3.326	0.0525	No
18	HDAC3	718	3.251	0.0541	No
19	FZR1	784	3.162	0.0545	No
20	TAF6	808	3.141	0.0572	No
21	KLHDC3	879	3.058	0.0572	No
22	DDX19B	895	3.043	0.0601	No
23	SMARCD1	943	2.995	0.0613	No
24	GLIS2	965	2.971	0.0639	No
25	EIF5A	1032	2.891	0.0638	No
26	CIB1	1039	2.885	0.0671	No
27	DDX54	1085	2.842	0.0682	No
28	HDAC7A	1096	2.834	0.0712	No
29	NOL6	1151	2.787	0.0717	No
30	ZNF346	1180	2.763	0.0736	No
31	LSM4	1193	2.755	0.0764	No
32	AAAS	1219	2.732	0.0785	No
33	HES6	1259	2.707	0.0797	No
34	SUV39H1	1291	2.683	0.0814	No
35	TAF12	1333	2.646	0.0824	No
36	ERCC8	1486	2.534	0.0772	No
37	ERCC2	1515	2.512	0.0788	No
38	TP53	1627	2.442	0.0758	No
39	HDAC6	1631	2.439	0.0787	No
40	ANAPC11	1663	2.417	0.0800	No
41	FGF18	1754	2.359	0.0780	No
42	HTATIP2	1791	2.335	0.0789	No
43	CHMP1A	1795	2.334	0.0817	No
44	SNRPA	1859	2.297	0.0811	No
45	EXOSC3	1880	2.283	0.0828	No
46	GTF3C5	1911	2.265	0.0840	No
47	PMF1	1921	2.261	0.0864	No
48	PPP1R9B	1951	2.244	0.0876	No
49	MCRS1	1960	2.238	0.0899	No
50	MPG	1968	2.234	0.0923	No
51	DEDD	1972	2.234	0.0950	No
52	RBPJ	2042	2.202	0.0939	No
53	NKX2-5	2049	2.195	0.0963	No
54	RBM14	2050	2.195	0.0991	No
55	RAD50	2076	2.181	0.1004	No
56	RPS19	2104	2.165	0.1017	No
57	BNIP1	2198	2.124	0.0992	No
58	TFIP11	2226	2.114	0.1004	No
59	HIF1A	2285	2.081	0.0998	No
60	HDAC11	2330	2.059	0.0999	No
61	MEN1	2331	2.058	0.1025	No
62	SNRPB	2365	2.043	0.1033	No
63	PDCD7	2374	2.042	0.1054	No
64	SMARCD3	2434	2.020	0.1047	No
65	POLR3H	2497	1.990	0.1037	No
66	ISG20	2569	1.962	0.1023	No
67	POLR2E	2593	1.951	0.1035	No
68	NRM	2736	1.890	0.0980	No
69	TIMELESS	2777	1.874	0.0982	No
70	SURF6	2819	1.855	0.0982	No
71	MYBBP1A	2836	1.847	0.0997	No
72	TAF7	2843	1.843	0.1016	No
73	DNMT3A	2847	1.842	0.1038	No
74	NUP98	3042	1.767	0.0953	No
75	GNAZ	3067	1.757	0.0962	No
76	SMC3	3091	1.752	0.0971	No
77	ELF4	3133	1.739	0.0970	No
78	ERCC4	3231	1.711	0.0939	No
79	CDC26	3261	1.701	0.0944	No
80	FOXE3	3340	1.676	0.0922	No
81	OGG1	3353	1.673	0.0936	No
82	RPA2	3444	1.646	0.0907	No
83	SNRP70	3445	1.645	0.0928	No
84	GEMIN5	3480	1.634	0.0930	No
85	EPAS1	3598	1.596	0.0885	No
86	WDR4	3727	1.559	0.0835	No
87	GCM1	3766	1.548	0.0833	No
88	IFI16	3772	1.546	0.0850	No
89	U2AF2	3837	1.528	0.0833	No
90	RANGAP1	3852	1.524	0.0845	No
91	NPC1	3894	1.512	0.0841	No
92	POP1	3942	1.502	0.0834	No
93	ELP4	3970	1.494	0.0838	No
94	NOLA3	4057	1.472	0.0809	No
95	RPL36	4123	1.453	0.0792	No
96	SF3A1	4128	1.452	0.0808	No
97	NLRP5	4134	1.451	0.0823	No
98	POP7	4189	1.437	0.0811	No
99	RALY	4197	1.435	0.0825	No
100	NUFIP1	4215	1.433	0.0834	No
101	CDK9	4233	1.427	0.0842	No
102	RPP40	4245	1.424	0.0854	No
103	SNRPD2	4380	1.387	0.0798	No
104	NCR1	4469	1.364	0.0767	No
105	POLR2A	4625	1.325	0.0698	No
106	GEMIN4	4747	1.298	0.0648	No
107	DULLARD	4908	1.258	0.0575	No
108	ATRX	4951	1.248	0.0568	No
109	ELL2	4958	1.245	0.0580	No
110	PITX2	5098	1.211	0.0519	No
111	NOL3	5100	1.211	0.0534	No
112	NUTF2	5132	1.203	0.0532	No
113	LRCH4	5176	1.193	0.0523	No
114	EDF1	5260	1.170	0.0492	No
115	SCRN1	5262	1.170	0.0506	No
116	FMR1	5381	1.144	0.0455	No
117	ARID4A	5408	1.137	0.0455	No
118	NXT1	5548	1.106	0.0393	No
119	NAP1L2	5573	1.101	0.0393	No
120	NOL4	5593	1.096	0.0397	No
121	PTF1A	5628	1.090	0.0392	No
122	RELA	5688	1.079	0.0373	No
123	U2AF1	5857	1.043	0.0293	No
124	REPIN1	5879	1.039	0.0295	No
125	TXNL4A	5890	1.037	0.0302	No
126	PSEN1	5950	1.025	0.0283	No
127	XRN2	6188	0.974	0.0165	No
128	IPO7	6222	0.968	0.0159	No
129	EXOSC10	6306	0.950	0.0125	No
130	FUSIP1	6344	0.942	0.0116	No
131	HOXC10	6478	0.914	0.0055	No
132	RGS12	6604	0.890	-0.0003	No
133	TAF6L	6630	0.884	-0.0006	No
134	POLR3C	6641	0.882	-0.0000	No
135	PPIH	6758	0.860	-0.0053	No
136	TDG	6820	0.846	-0.0076	No
137	ELP3	6836	0.843	-0.0074	No
138	THRAP3	6913	0.827	-0.0105	No
139	POLR2J	7000	0.811	-0.0142	No
140	SPTBN4	7078	0.795	-0.0175	No
141	GTF3C1	7159	0.781	-0.0209	No
142	SNAPC4	7169	0.779	-0.0204	No
143	CBX5	7193	0.773	-0.0207	No
144	ERCC3	7393	0.729	-0.0307	No
145	DNAJB9	7409	0.726	-0.0307	No
146	FIGLA	7518	0.702	-0.0357	No
147	NEK11	7529	0.700	-0.0354	No
148	GIT2	7533	0.699	-0.0347	No
149	RRP9	7597	0.686	-0.0373	No
150	TEP1	7599	0.685	-0.0365	No
151	GRINL1A	8395	0.513	-0.0795	No
152	TAF4	8513	0.489	-0.0854	No
153	PTBP1	8605	0.467	-0.0898	No
154	ATXN1	8633	0.460	-0.0907	No
155	DDX24	8647	0.456	-0.0908	No
156	HDAC8	8649	0.454	-0.0903	No
157	PURA	8668	0.451	-0.0907	No
158	NUP62	8740	0.433	-0.0941	No
159	LMO4	8765	0.427	-0.0949	No
160	ASNA1	8787	0.422	-0.0955	No
161	HCLS1	8909	0.392	-0.1017	No
162	TAF10	8914	0.391	-0.1014	No
163	HDAC10	8928	0.387	-0.1016	No
164	RUVBL2	8931	0.387	-0.1013	No
165	HIPK2	8941	0.385	-0.1013	No
166	NFYC	8966	0.379	-0.1021	No
167	NDUFA13	9113	0.342	-0.1097	No
168	SF3B4	9174	0.328	-0.1126	No
169	APTX	9213	0.320	-0.1143	No
170	SLC29A2	9242	0.314	-0.1154	No
171	DDX56	9332	0.296	-0.1200	No
172	RTCD1	9526	0.256	-0.1303	No
173	PHF21A	9550	0.250	-0.1312	No
174	SMARCA5	9701	0.212	-0.1392	No
175	TERT	9740	0.205	-0.1410	No
176	SRP68	9803	0.190	-0.1442	No
177	NPM2	9829	0.184	-0.1453	No
178	PRM2	10005	0.142	-0.1548	No
179	SP100	10027	0.136	-0.1558	No
180	MPHOSPH10	10048	0.131	-0.1567	No
181	NPAS2	10076	0.125	-0.1580	No
182	BNIP3	10117	0.115	-0.1601	No
183	BCAS2	10137	0.110	-0.1610	No
184	NUP153	10151	0.107	-0.1616	No
185	ZBTB16	10315	0.059	-0.1704	No
186	RCC1	10334	0.055	-0.1714	No
187	SF3B3	10535	0.005	-0.1824	No
188	BRCA1	10553	0.001	-0.1833	No
189	DMC1	10590	-0.008	-0.1853	No
190	DHX8	10693	-0.034	-0.1908	No
191	SMUG1	10768	-0.056	-0.1948	No
192	CPSF3	10953	-0.099	-0.2048	No
193	NOD2	11013	-0.116	-0.2079	No
194	CENPF	11061	-0.129	-0.2103	No
195	NAP1L3	11144	-0.147	-0.2146	No
196	XPO1	11398	-0.210	-0.2283	No
197	POLR2B	11441	-0.219	-0.2303	No
198	GEMIN6	11464	-0.225	-0.2313	No
199	FOXC1	11481	-0.230	-0.2318	No
200	PHB	11587	-0.255	-0.2373	No
201	SREBF1	11692	-0.285	-0.2427	No
202	NOL1	11701	-0.286	-0.2427	No
203	NUDT21	11717	-0.291	-0.2432	No
204	RUVBL1	11767	-0.306	-0.2455	No
205	TUBG1	11923	-0.347	-0.2536	No
206	PAM	11939	-0.351	-0.2540	No
207	NOLA2	11958	-0.356	-0.2545	No
208	SNRPA1	11988	-0.365	-0.2557	No
209	CLOCK	12069	-0.389	-0.2596	No
210	RPL3	12092	-0.393	-0.2603	No
211	ZNF148	12157	-0.410	-0.2633	No
212	CHAF1A	12262	-0.438	-0.2685	No
213	WTAP	12405	-0.476	-0.2757	No
214	JUN	12417	-0.481	-0.2757	No
215	PHF12	12465	-0.493	-0.2776	No
216	SMARCD2	12467	-0.494	-0.2771	No
217	FOXF2	12498	-0.503	-0.2781	No
218	SNRPN	12577	-0.526	-0.2817	No
219	RAE1	12579	-0.526	-0.2811	No
220	GTF2F1	12629	-0.540	-0.2831	No
221	MSH2	12712	-0.567	-0.2869	No
222	SNRPB2	12828	-0.598	-0.2925	No
223	GTF3C3	12928	-0.622	-0.2972	No
224	GUCY2F	12972	-0.634	-0.2987	No
225	MCM7	13115	-0.680	-0.3057	No
226	HNRPF	13122	-0.681	-0.3052	No
227	TIMM50	13287	-0.734	-0.3133	No
228	SNRPF	13326	-0.748	-0.3144	No
229	MCM3	13442	-0.780	-0.3198	No
230	POLR1E	13448	-0.784	-0.3191	No
231	NR6A1	13458	-0.786	-0.3186	No
232	RPP38	13478	-0.791	-0.3186	No
233	SMARCA4	13576	-0.822	-0.3229	No
234	DDX11	13661	-0.849	-0.3265	No
235	NPM1	13668	-0.854	-0.3258	No
236	TIPIN	13705	-0.863	-0.3267	No
237	MPHOSPH1	13755	-0.880	-0.3283	No
238	BARD1	13787	-0.888	-0.3288	No
239	RPL35	13824	-0.897	-0.3297	No
240	UBE2I	13886	-0.920	-0.3319	No
241	TOPBP1	13901	-0.926	-0.3315	No
242	LMNB1	13920	-0.934	-0.3313	No
243	SAP18	13964	-0.947	-0.3325	No
244	MED4	14104	-0.995	-0.3389	No
245	DYRK1A	14124	-1.003	-0.3387	No
246	SNRPD1	14126	-1.004	-0.3375	No
247	BRCC3	14297	-1.064	-0.3455	No
248	POLA1	14301	-1.064	-0.3443	No
249	PPARGC1B	14350	-1.079	-0.3456	No
250	STAG3	14485	-1.129	-0.3516	No
251	NOLC1	14501	-1.135	-0.3510	No
252	ERCC5	14510	-1.140	-0.3500	No
253	H2AFY	14516	-1.141	-0.3489	No
254	TTN	14598	-1.171	-0.3518	No
255	PPARGC1A	14606	-1.174	-0.3508	No
256	RANBP2	14634	-1.188	-0.3508	No
257	COIL	14649	-1.192	-0.3500	No
258	NF2	14671	-1.202	-0.3497	No
259	EFTUD2	14682	-1.207	-0.3487	No
260	PAX8	14889	-1.285	-0.3584	No
261	TRIM27	14904	-1.293	-0.3576	No
262	ASF1A	14999	-1.333	-0.3611	No
263	PHF5A	15018	-1.345	-0.3604	No
264	CHAF1B	15023	-1.348	-0.3589	No
265	EXOSC9	15105	-1.379	-0.3617	No
266	SIP1	15136	-1.395	-0.3616	No
267	LIG4	15273	-1.461	-0.3672	No
268	HMGB2	15286	-1.469	-0.3660	No
269	CPSF1	15369	-1.506	-0.3687	No
270	ZNF638	15380	-1.511	-0.3673	No
271	MRPL19	15381	-1.511	-0.3654	No
272	ARNTL	15388	-1.512	-0.3639	No
273	PTGER3	15443	-1.535	-0.3649	No
274	HNRPH2	15482	-1.551	-0.3651	No
275	CHEK1	15588	-1.603	-0.3688	Yes
276	MATR3	15617	-1.615	-0.3684	Yes
277	ACTB	15618	-1.615	-0.3663	Yes
278	PRPF8	15690	-1.651	-0.3682	Yes
279	RPL11	15698	-1.656	-0.3665	Yes
280	TOP2B	15703	-1.659	-0.3646	Yes
281	TCOF1	15704	-1.660	-0.3626	Yes
282	ATXN3	15715	-1.664	-0.3610	Yes
283	GTF2H4	15741	-1.677	-0.3603	Yes
284	TAF9	15742	-1.678	-0.3582	Yes
285	EZH2	15777	-1.693	-0.3580	Yes
286	COPS2	15808	-1.712	-0.3575	Yes
287	XPO7	15835	-1.727	-0.3567	Yes
288	ASCC3L1	15842	-1.729	-0.3549	Yes
289	BNIP3L	15854	-1.736	-0.3533	Yes
290	NUP133	15866	-1.746	-0.3518	Yes
291	ANAPC5	15879	-1.752	-0.3502	Yes
292	POLI	15910	-1.769	-0.3497	Yes
293	TERF2IP	15911	-1.770	-0.3475	Yes
294	UBTF	15914	-1.772	-0.3454	Yes
295	RPP30	15923	-1.780	-0.3436	Yes
296	KRR1	15934	-1.786	-0.3419	Yes
297	ASH2L	15935	-1.786	-0.3396	Yes
298	MSH3	15982	-1.816	-0.3399	Yes
299	NARG1	15998	-1.829	-0.3384	Yes
300	SNRPG	16002	-1.836	-0.3363	Yes
301	SNW1	16009	-1.840	-0.3343	Yes
302	RPS7	16148	-1.914	-0.3395	Yes
303	RBBP5	16186	-1.935	-0.3391	Yes
304	WRN	16262	-1.975	-0.3408	Yes
305	NBN	16265	-1.977	-0.3384	Yes
306	MRE11A	16289	-1.995	-0.3372	Yes
307	RANBP5	16291	-1.997	-0.3348	Yes
308	SNRPD3	16367	-2.054	-0.3363	Yes
309	PURB	16416	-2.082	-0.3364	Yes
310	NCL	16426	-2.089	-0.3342	Yes
311	LRPPRC	16434	-2.094	-0.3320	Yes
312	POLQ	16463	-2.114	-0.3309	Yes
313	SF3B2	16465	-2.115	-0.3283	Yes
314	CIRH1A	16467	-2.117	-0.3257	Yes
315	TOP2A	16490	-2.130	-0.3243	Yes
316	RAD51	16527	-2.166	-0.3235	Yes
317	HDAC9	16534	-2.169	-0.3211	Yes
318	EMG1	16632	-2.233	-0.3237	Yes
319	KPNA1	16651	-2.248	-0.3219	Yes
320	SNUPN	16662	-2.253	-0.3196	Yes
321	CBX1	16666	-2.254	-0.3169	Yes
322	SMC2	16667	-2.254	-0.3141	Yes
323	KLHL7	16678	-2.261	-0.3118	Yes
324	XRCC4	16686	-2.266	-0.3094	Yes
325	WDHD1	16690	-2.269	-0.3067	Yes
326	KPNA3	16694	-2.272	-0.3041	Yes
327	NUP50	16698	-2.274	-0.3014	Yes
328	ING2	16714	-2.285	-0.2993	Yes
329	HDAC1	16722	-2.288	-0.2969	Yes
330	EXOSC1	16723	-2.289	-0.2940	Yes
331	INTS6	16735	-2.298	-0.2917	Yes
332	BUB1B	16743	-2.305	-0.2892	Yes
333	RBM39	16797	-2.350	-0.2892	Yes
334	NUP160	16813	-2.361	-0.2871	Yes
335	ILF2	16840	-2.378	-0.2855	Yes
336	RSF1	16851	-2.387	-0.2831	Yes
337	CDC23	16863	-2.396	-0.2807	Yes
338	IKBKAP	16864	-2.397	-0.2777	Yes
339	HNRPUL1	16880	-2.408	-0.2755	Yes
340	CDKN2A	16919	-2.434	-0.2746	Yes
341	CHEK2	16926	-2.441	-0.2718	Yes
342	YEATS4	16929	-2.442	-0.2689	Yes
343	TOP1	16952	-2.462	-0.2670	Yes
344	TBP	16974	-2.479	-0.2651	Yes
345	MED12	16975	-2.479	-0.2620	Yes
346	SHFM1	17005	-2.502	-0.2605	Yes
347	MYO6	17029	-2.523	-0.2586	Yes
348	KIN	17095	-2.581	-0.2589	Yes
349	GTF3C4	17100	-2.586	-0.2559	Yes
350	PRPF31	17116	-2.593	-0.2535	Yes
351	MORF4L2	17139	-2.623	-0.2514	Yes
352	TAF11	17144	-2.628	-0.2483	Yes
353	SAP30	17248	-2.726	-0.2506	Yes
354	OIP5	17268	-2.743	-0.2482	Yes
355	HSPD1	17355	-2.819	-0.2494	Yes
356	SMC1A	17365	-2.831	-0.2464	Yes
357	PCGF6	17385	-2.845	-0.2438	Yes
358	NUP54	17410	-2.875	-0.2416	Yes
359	MSH6	17434	-2.894	-0.2392	Yes
360	NCOA6	17463	-2.917	-0.2371	Yes
361	API5	17486	-2.938	-0.2346	Yes
362	ACTL6A	17491	-2.939	-0.2312	Yes
363	ARID1A	17500	-2.949	-0.2279	Yes
364	RPA3	17519	-2.986	-0.2252	Yes
365	PTGES3	17522	-2.987	-0.2216	Yes
366	RPA1	17548	-3.013	-0.2192	Yes
367	SENP2	17559	-3.020	-0.2160	Yes
368	ZRSR2	17587	-3.057	-0.2136	Yes
369	POLR3K	17674	-3.134	-0.2144	Yes
370	RB1	17687	-3.152	-0.2111	Yes
371	CCNH	17706	-3.175	-0.2082	Yes
372	HNRPH1	17707	-3.176	-0.2042	Yes
373	NFYA	17710	-3.180	-0.2003	Yes
374	DDX21	17714	-3.184	-0.1965	Yes
375	NSUN2	17724	-3.194	-0.1930	Yes
376	GTF3C2	17766	-3.248	-0.1912	Yes
377	POLH	17777	-3.265	-0.1877	Yes
378	SMG6	17778	-3.266	-0.1836	Yes
379	SFRS2	17780	-3.269	-0.1795	Yes
380	NOL5A	17783	-3.271	-0.1756	Yes
381	SMAD2	17789	-3.278	-0.1717	Yes
382	NAP1L4	17803	-3.292	-0.1683	Yes
383	SF3A3	17808	-3.301	-0.1644	Yes
384	SFRS2IP	17828	-3.326	-0.1613	Yes
385	KPNA2	17837	-3.339	-0.1576	Yes
386	PARP1	17854	-3.364	-0.1543	Yes
387	TOPORS	17875	-3.404	-0.1511	Yes
388	TAF13	17936	-3.499	-0.1500	Yes
389	NUP88	17976	-3.558	-0.1477	Yes
390	DDX47	17978	-3.567	-0.1433	Yes
391	TPR	17981	-3.575	-0.1389	Yes
392	GTF2H1	17984	-3.579	-0.1346	Yes
393	LYAR	18017	-3.620	-0.1318	Yes
394	MED6	18023	-3.629	-0.1276	Yes
395	XRCC6	18076	-3.704	-0.1258	Yes
396	HNRPM	18113	-3.772	-0.1230	Yes
397	SMARCE1	18128	-3.804	-0.1191	Yes
398	ANAPC4	18177	-3.891	-0.1168	Yes
399	SMARCC1	18179	-3.892	-0.1120	Yes
400	SDAD1	18194	-3.918	-0.1079	Yes
401	BNIP2	18196	-3.922	-0.1030	Yes
402	HNRPK	18220	-3.977	-0.0993	Yes
403	DHX15	18222	-3.982	-0.0944	Yes
404	KPNB1	18242	-4.033	-0.0904	Yes
405	HNRPDL	18259	-4.077	-0.0862	Yes
406	CCNT1	18265	-4.084	-0.0814	Yes
407	SUMO1	18274	-4.114	-0.0766	Yes
408	HDAC2	18308	-4.192	-0.0732	Yes
409	RTN4	18317	-4.226	-0.0684	Yes
410	GNL3	18331	-4.251	-0.0638	Yes
411	TAF5	18333	-4.253	-0.0585	Yes
412	EED	18339	-4.265	-0.0535	Yes
413	PRICKLE1	18355	-4.302	-0.0489	Yes
414	SMAD4	18375	-4.376	-0.0445	Yes
415	CDK8	18387	-4.436	-0.0395	Yes
416	MKI67IP	18389	-4.438	-0.0340	Yes
417	IVNS1ABP	18464	-4.681	-0.0322	Yes
418	NFYB	18488	-4.777	-0.0275	Yes
419	TMPO	18492	-4.809	-0.0217	Yes
420	MDM2	18526	-5.019	-0.0172	Yes
421	NUP107	18555	-5.358	-0.0121	Yes
422	LBR	18573	-5.600	-0.0060	Yes
423	EPC1	18603	-6.642	0.0007	Yes