Details for gene set V$NERF

Table: GSEA Results Summary

Dataset	set03_truncNotch_versus_absentNotch
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	V$NERF_Q2
Enrichment Score (ES)	0.28661767
Normalized Enrichment Score (NES)	1.3641249
Nominal p-value	0.016513761
FDR q-value	0.62248117
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RGS3	12	7.042	0.0234	Yes
2	HTF9C	101	5.047	0.0359	Yes
3	POLD4	122	4.910	0.0517	Yes
4	RASAL1	131	4.856	0.0678	Yes
5	HMGA1	184	4.595	0.0807	Yes
6	LANCL1	211	4.440	0.0945	Yes
7	MAP4K1	254	4.300	0.1069	Yes
8	DOK1	284	4.174	0.1197	Yes
9	AGPAT1	306	4.100	0.1325	Yes
10	ROM1	314	4.073	0.1461	Yes
11	SH2D2A	413	3.776	0.1537	Yes
12	CORO1A	460	3.694	0.1638	Yes
13	USP5	463	3.687	0.1764	Yes
14	FGR	477	3.667	0.1882	Yes
15	MAPK3	561	3.505	0.1957	Yes
16	RPS6KA4	694	3.288	0.1998	Yes
17	PTPN6	726	3.242	0.2092	Yes
18	STAT5A	754	3.208	0.2187	Yes
19	ARRB2	896	3.043	0.2215	Yes
20	DEF6	1027	2.895	0.2243	Yes
21	TRAPPC3	1045	2.883	0.2333	Yes
22	ITPR3	1218	2.734	0.2333	Yes
23	NRXN3	1252	2.712	0.2408	Yes
24	CREB3	1281	2.693	0.2485	Yes
25	TLN1	1286	2.687	0.2575	Yes
26	TWIST1	1391	2.604	0.2607	Yes
27	C1QTNF6	1392	2.604	0.2696	Yes
28	ARHGDIB	1550	2.488	0.2696	Yes
29	FBXO36	1585	2.468	0.2762	Yes
30	EGR3	1848	2.302	0.2699	Yes
31	PPP1R9B	1951	2.244	0.2721	Yes
32	SPRED2	2040	2.203	0.2748	Yes
33	MDFI	2109	2.161	0.2785	Yes
34	PEX16	2343	2.053	0.2729	Yes
35	FBS1	2392	2.033	0.2773	Yes
36	CNTNAP1	2564	1.964	0.2747	Yes
37	JUNB	2580	1.958	0.2806	Yes
38	CENTD2	2748	1.887	0.2780	Yes
39	SALL1	2767	1.878	0.2835	Yes
40	TENC1	2827	1.851	0.2866	Yes
41	TGIF2	3096	1.750	0.2781	No
42	GGTL3	3310	1.688	0.2723	No
43	DPP3	3384	1.664	0.2740	No
44	NTRK3	3447	1.644	0.2763	No
45	LYPLA2	3625	1.589	0.2722	No
46	MMRN2	3646	1.583	0.2765	No
47	LSAMP	3675	1.576	0.2804	No
48	FURIN	3707	1.566	0.2840	No
49	STAT5B	3867	1.521	0.2806	No
50	CLIC1	4122	1.453	0.2718	No
51	ITPKB	4325	1.403	0.2657	No
52	FGFR2	4367	1.390	0.2682	No
53	LST1	4475	1.362	0.2671	No
54	NFIA	4585	1.334	0.2657	No
55	CD79B	4790	1.290	0.2591	No
56	RPS3	4877	1.264	0.2588	No
57	ADAMTS4	4959	1.245	0.2586	No
58	PITX2	5098	1.211	0.2553	No
59	FXYD5	5179	1.192	0.2550	No
60	GRM3	5189	1.190	0.2586	No
61	TMEM4	5649	1.086	0.2374	No
62	POU6F2	5654	1.086	0.2409	No
63	UQCRH	5713	1.072	0.2415	No
64	BAZ2A	5782	1.058	0.2414	No
65	FLT1	5852	1.044	0.2412	No
66	FCER1G	5859	1.043	0.2445	No
67	ROBO4	5917	1.033	0.2449	No
68	ARHGAP8	6263	0.960	0.2295	No
69	PAX6	6396	0.930	0.2255	No
70	SEMA4C	6636	0.883	0.2156	No
71	SH3TC1	6835	0.843	0.2078	No
72	MID1	6841	0.841	0.2104	No
73	NPY	7084	0.793	0.2000	No
74	ZFPM1	7117	0.786	0.2009	No
75	RHOV	7151	0.781	0.2018	No
76	CNNM1	7229	0.766	0.2002	No
77	DDIT3	7312	0.746	0.1984	No
78	MPL	7438	0.721	0.1940	No
79	HOXC4	7463	0.714	0.1952	No
80	FOSL1	7706	0.666	0.1843	No
81	BMP4	7888	0.625	0.1767	No
82	CPNE8	7892	0.623	0.1786	No
83	ST7L	8052	0.589	0.1720	No
84	CAP1	8119	0.574	0.1704	No
85	NDUFS2	8236	0.549	0.1660	No
86	TRO	8309	0.532	0.1639	No
87	ZHX2	8396	0.512	0.1610	No
88	POU4F3	8734	0.434	0.1442	No
89	CDK5	8854	0.405	0.1392	No
90	LAT	8871	0.400	0.1397	No
91	HCLS1	8909	0.392	0.1390	No
92	SLC4A2	9042	0.359	0.1331	No
93	CD79A	9216	0.319	0.1248	No
94	TUSC3	9249	0.312	0.1241	No
95	LYN	9298	0.303	0.1226	No
96	JAG1	9373	0.288	0.1196	No
97	SNCG	9428	0.277	0.1176	No
98	HIC1	9683	0.216	0.1045	No
99	KCND1	10195	0.092	0.0772	No
100	OLFML2A	10231	0.083	0.0756	No
101	HMGN2	10306	0.061	0.0718	No
102	SHC3	10329	0.056	0.0708	No
103	PIGW	10709	-0.038	0.0503	No
104	SLCO2B1	10898	-0.086	0.0404	No
105	EFNA1	10939	-0.096	0.0386	No
106	HYAL2	11042	-0.123	0.0335	No
107	PTPRN	11188	-0.160	0.0262	No
108	LYL1	11598	-0.260	0.0049	No
109	ATOH8	11602	-0.260	0.0056	No
110	SLITRK6	11654	-0.276	0.0038	No
111	HOXB9	11746	-0.299	-0.0001	No
112	PLCB2	11943	-0.352	-0.0095	No
113	PEX11B	11950	-0.354	-0.0086	No
114	PIK3CG	12083	-0.391	-0.0144	No
115	CAPZA1	12245	-0.433	-0.0217	No
116	UBE2L3	12302	-0.447	-0.0232	No
117	SDCCAG8	12480	-0.497	-0.0311	No
118	SRPR	12607	-0.533	-0.0361	No
119	PAK3	12650	-0.547	-0.0365	No
120	GMFB	12835	-0.599	-0.0444	No
121	DIABLO	13387	-0.766	-0.0717	No
122	GPR132	13741	-0.876	-0.0878	No
123	CHD2	13845	-0.907	-0.0903	No
124	SLC30A7	13859	-0.912	-0.0879	No
125	STARD8	14116	-1.000	-0.0983	No
126	IKBKB	14196	-1.028	-0.0991	No
127	FKBP10	14264	-1.049	-0.0991	No
128	ERG	14317	-1.070	-0.0983	No
129	ZNF23	14372	-1.091	-0.0975	No
130	ATP5H	14729	-1.220	-0.1126	No
131	TPP2	14866	-1.276	-0.1156	No
132	ATP1A1	15022	-1.348	-0.1194	No
133	LOXL3	15159	-1.405	-0.1220	No
134	ACTR3	15164	-1.406	-0.1174	No
135	CDCA3	15207	-1.433	-0.1147	No
136	RBBP7	15228	-1.441	-0.1109	No
137	MAP2K6	15459	-1.542	-0.1181	No
138	TFRC	15504	-1.563	-0.1151	No
139	GOLGA7	15620	-1.616	-0.1158	No
140	ELK3	15714	-1.664	-0.1152	No
141	UBTF	15914	-1.772	-0.1199	No
142	MCTS1	15943	-1.792	-0.1153	No
143	RASA1	16230	-1.958	-0.1241	No
144	PCDH7	16278	-1.986	-0.1198	No
145	EBAG9	16377	-2.059	-0.1181	No
146	CAMK1D	16492	-2.132	-0.1170	No
147	ELOVL5	16556	-2.181	-0.1130	No
148	NLK	16679	-2.261	-0.1118	No
149	VCL	16727	-2.291	-0.1065	No
150	TCF12	16830	-2.371	-0.1040	No
151	STARD13	16903	-2.426	-0.0996	No
152	HN1	17215	-2.697	-0.1072	No
153	SECISBP2	17225	-2.704	-0.0984	No
154	DPP8	17249	-2.727	-0.0903	No
155	BTBD12	17329	-2.800	-0.0850	No
156	CALM2	17594	-3.060	-0.0889	No
157	FCGR2B	17613	-3.081	-0.0793	No
158	NFATC3	17715	-3.185	-0.0739	No
159	KLF13	17731	-3.203	-0.0638	No
160	EXTL2	17764	-3.247	-0.0544	No
161	MYOHD1	17869	-3.394	-0.0484	No
162	TOPORS	17875	-3.404	-0.0370	No
163	RANBP1	17962	-3.537	-0.0296	No
164	LRRFIP2	18121	-3.788	-0.0252	No
165	UCHL5	18165	-3.866	-0.0143	No
166	BCOR	18364	-4.333	-0.0102	No
167	FREQ	18608	-6.962	0.0004	No