Details for gene set CAGTATT,MIR-200B,MIR-200C,MIR-429[GSEA]

Table: GSEA Results Summary

Dataset	set03_truncNotch_versus_absentNotch
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	CAGTATT,MIR-200B,MIR-200C,MIR-429
Enrichment Score (ES)	-0.4433695
Normalized Enrichment Score (NES)	-2.3074133
Nominal p-value	0.0
FDR q-value	0.0
FWER p-Value	0.0

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PPM1F	307	4.090	-0.0100	No
2	TRIM2	320	4.052	-0.0039	No
3	PCAF	429	3.745	-0.0036	No
4	HRB	478	3.665	-0.0001	No
5	DLC1	562	3.505	0.0012	No
6	EIF2B5	751	3.212	-0.0038	No
7	ETV5	791	3.153	-0.0007	No
8	IGSF3	843	3.095	0.0017	No
9	SMARCD1	943	2.995	0.0012	No
10	IHPK1	993	2.942	0.0034	No
11	BAT3	1212	2.739	-0.0039	No
12	PTHLH	1236	2.723	-0.0007	No
13	PPP1R10	1237	2.722	0.0039	No
14	RKHD2	1302	2.675	0.0048	No
15	SRF	1321	2.658	0.0082	No
16	NDST1	1423	2.579	0.0070	No
17	RPS6KB1	1566	2.477	0.0034	No
18	EGR3	1848	2.302	-0.0082	No
19	CREB5	1852	2.299	-0.0045	No
20	PPP1R9B	1951	2.244	-0.0062	No
21	CNTFR	2102	2.166	-0.0108	No
22	MMD2	2106	2.163	-0.0073	No
23	MTUS1	2149	2.144	-0.0061	No
24	RDH10	2325	2.060	-0.0122	No
25	RPS6KA2	2437	2.017	-0.0149	No
26	MXD3	2603	1.943	-0.0207	No
27	COPS8	2606	1.942	-0.0176	No
28	MGAT2	2612	1.940	-0.0147	No
29	PPP4R2	2676	1.914	-0.0149	No
30	ACE2	2798	1.866	-0.0184	No
31	DNMT3A	2847	1.842	-0.0180	No
32	AP1S2	2981	1.787	-0.0223	No
33	KLF12	2985	1.785	-0.0195	No
34	SLC16A2	3110	1.747	-0.0234	No
35	FEZ2	3162	1.732	-0.0233	No
36	HECTD2	3174	1.728	-0.0210	No
37	PHACTR3	3179	1.727	-0.0184	No
38	SBF1	3197	1.723	-0.0164	No
39	FOXK1	3270	1.699	-0.0176	No
40	ARHGDIA	3281	1.696	-0.0153	No
41	BRWD1	3316	1.684	-0.0143	No
42	RKHD3	3438	1.647	-0.0182	No
43	SCN3B	3499	1.627	-0.0188	No
44	LYPLA2	3625	1.589	-0.0230	No
45	TUBB3	3750	1.552	-0.0272	No
46	PAK7	3801	1.536	-0.0274	No
47	LRP1B	3810	1.534	-0.0253	No
48	GPR146	3891	1.513	-0.0271	No
49	NPC1	3894	1.512	-0.0247	No
50	RNF5	3930	1.505	-0.0241	No
51	ELAVL2	4014	1.483	-0.0262	No
52	GLI3	4028	1.480	-0.0245	No
53	ETS1	4141	1.449	-0.0282	No
54	NRP2	4193	1.437	-0.0286	No
55	FGFR2	4367	1.390	-0.0357	No
56	CDH11	4428	1.375	-0.0367	No
57	BASP1	4437	1.373	-0.0349	No
58	PRKAR2B	4477	1.362	-0.0348	No
59	CSMD3	4488	1.359	-0.0331	No
60	NFIA	4585	1.334	-0.0361	No
61	SLC14A1	4652	1.319	-0.0375	No
62	LIN7B	4665	1.317	-0.0360	No
63	PCDH8	4732	1.302	-0.0374	No
64	HS3ST1	4893	1.261	-0.0441	No
65	LCP1	4934	1.252	-0.0442	No
66	KCND2	4938	1.252	-0.0423	No
67	ADCY2	4940	1.251	-0.0402	No
68	ATRX	4951	1.248	-0.0387	No
69	PIN1	5339	1.154	-0.0580	No
70	FMR1	5381	1.144	-0.0583	No
71	SOX2	5440	1.128	-0.0596	No
72	FBXW2	5447	1.126	-0.0581	No
73	FGD1	5502	1.115	-0.0592	No
74	PCTK1	5667	1.084	-0.0663	No
75	NR5A2	5712	1.072	-0.0670	No
76	CACNA1C	5771	1.060	-0.0684	No
77	SOX1	5923	1.032	-0.0749	No
78	SCD	6036	1.008	-0.0794	No
79	SLC1A2	6048	1.005	-0.0783	No
80	PLK2	6174	0.977	-0.0835	No
81	LRRTM3	6224	0.968	-0.0846	No
82	NDN	6260	0.961	-0.0849	No
83	CASR	6327	0.945	-0.0870	No
84	PPP2R5C	6440	0.921	-0.0916	No
85	PTPN13	6456	0.918	-0.0908	No
86	RHOA	6482	0.912	-0.0907	No
87	EIF5B	6566	0.897	-0.0937	No
88	AMOTL2	6751	0.862	-0.1024	No
89	ACVR2A	6808	0.850	-0.1040	No
90	TUBB2A	6818	0.847	-0.1031	No
91	NAB1	6947	0.821	-0.1088	No
92	GATA4	6980	0.815	-0.1092	No
93	NXPH1	7174	0.777	-0.1184	No
94	MPP5	7209	0.770	-0.1190	No
95	NAP1L5	7230	0.766	-0.1188	No
96	BHLHB3	7339	0.741	-0.1235	No
97	HMGB3	7473	0.713	-0.1296	No
98	PLCL1	7477	0.712	-0.1286	No
99	SDC2	7491	0.710	-0.1281	No
100	HLF	7493	0.709	-0.1270	No
101	GIT2	7533	0.699	-0.1280	No
102	KCNK2	7638	0.677	-0.1325	No
103	LHFP	7686	0.669	-0.1340	No
104	HDHD2	7759	0.655	-0.1368	No
105	GPM6A	7774	0.651	-0.1365	No
106	TCF2	7929	0.616	-0.1439	No
107	PKIA	7960	0.611	-0.1445	No
108	NEGR1	8013	0.598	-0.1464	No
109	TNFRSF11B	8116	0.574	-0.1510	No
110	SLC38A4	8294	0.537	-0.1598	No
111	SEMA6D	8429	0.506	-0.1663	No
112	DACH1	8491	0.494	-0.1688	No
113	TAF4	8513	0.489	-0.1692	No
114	USP25	8553	0.477	-0.1705	No
115	PTBP1	8605	0.467	-0.1725	No
116	ATXN1	8633	0.460	-0.1732	No
117	MFAP5	8710	0.443	-0.1766	No
118	TRAM1L1	8752	0.431	-0.1782	No
119	LEPR	8766	0.427	-0.1782	No
120	AKAP2	8825	0.412	-0.1807	No
121	CORO1C	8878	0.399	-0.1828	No
122	SYT1	8896	0.395	-0.1831	No
123	ARHGEF17	8951	0.383	-0.1854	No
124	GNAI3	9183	0.326	-0.1975	No
125	CBX4	9364	0.289	-0.2069	No
126	PRDM1	9408	0.281	-0.2088	No
127	PHF21A	9550	0.250	-0.2161	No
128	MYT1	9627	0.228	-0.2199	No
129	EPS8	9639	0.225	-0.2201	No
130	ACY1L2	9664	0.219	-0.2210	No
131	AFF3	9773	0.198	-0.2266	No
132	KCNQ4	9779	0.196	-0.2266	No
133	B3GNT1	9858	0.178	-0.2305	No
134	HIC2	9872	0.172	-0.2310	No
135	FBXW11	9893	0.167	-0.2318	No
136	CAB39	9966	0.150	-0.2355	No
137	RGL1	9993	0.144	-0.2367	No
138	PARD6B	10112	0.116	-0.2429	No
139	NUP153	10151	0.107	-0.2448	No
140	DUSP1	10152	0.107	-0.2446	No
141	GLRA2	10166	0.101	-0.2452	No
142	CCNJ	10225	0.085	-0.2482	No
143	PLS3	10249	0.078	-0.2494	No
144	ZFPM2	10318	0.059	-0.2530	No
145	KCTD8	10333	0.055	-0.2536	No
146	ST6GALNAC5	10394	0.038	-0.2569	No
147	KLF10	10612	-0.013	-0.2687	No
148	PCTK2	10632	-0.019	-0.2697	No
149	SEC23A	10722	-0.042	-0.2745	No
150	EFNA1	10939	-0.096	-0.2862	No
151	DNAJB5	10940	-0.096	-0.2860	No
152	PLEKHC1	10957	-0.100	-0.2867	No
153	PKD1	11036	-0.122	-0.2908	No
154	EFNB2	11152	-0.149	-0.2968	No
155	BAP1	11249	-0.176	-0.3018	No
156	EDG2	11303	-0.188	-0.3044	No
157	RAB21	11343	-0.198	-0.3062	No
158	LRP1	11519	-0.238	-0.3154	No
159	FHOD1	11556	-0.248	-0.3169	No
160	YPEL2	11613	-0.263	-0.3196	No
161	UBE2B	11616	-0.263	-0.3192	No
162	CLASP2	11635	-0.268	-0.3198	No
163	NPTX1	11752	-0.300	-0.3256	No
164	FHL1	11794	-0.315	-0.3273	No
165	CRH	11889	-0.340	-0.3319	No
166	PAM	11939	-0.351	-0.3340	No
167	IER5	12028	-0.377	-0.3382	No
168	GATA2	12074	-0.390	-0.3400	No
169	SNAP25	12104	-0.397	-0.3410	No
170	EIF2S1	12150	-0.408	-0.3427	No
171	RND3	12264	-0.439	-0.3482	No
172	SCHIP1	12337	-0.458	-0.3514	No
173	STX1A	12403	-0.476	-0.3541	No
174	TEAD1	12634	-0.542	-0.3658	No
175	DGKA	12649	-0.546	-0.3657	No
176	KCTD15	12706	-0.566	-0.3678	No
177	SSH2	12718	-0.569	-0.3675	No
178	SYVN1	12734	-0.573	-0.3673	No
179	DAG1	12758	-0.579	-0.3676	No
180	NIPA1	12893	-0.615	-0.3739	No
181	PAPOLA	12900	-0.615	-0.3732	No
182	GEM	13003	-0.642	-0.3777	No
183	ESRRG	13159	-0.691	-0.3851	No
184	THAP1	13160	-0.691	-0.3839	No
185	TMEFF2	13336	-0.751	-0.3923	No
186	TARDBP	13395	-0.768	-0.3942	No
187	OCLN	13474	-0.790	-0.3971	No
188	NPM1	13668	-0.854	-0.4063	No
189	DDX3Y	13721	-0.868	-0.4077	No
190	NGEF	13723	-0.869	-0.4063	No
191	TUBB	13724	-0.869	-0.4048	No
192	SULF1	13767	-0.885	-0.4056	No
193	UBE2D1	13769	-0.885	-0.4042	No
194	PALM2	13823	-0.897	-0.4056	No
195	AMFR	13831	-0.901	-0.4045	No
196	UBE2I	13886	-0.920	-0.4059	No
197	DCUN1D1	14112	-0.998	-0.4166	No
198	ORMDL3	14177	-1.021	-0.4184	No
199	PDCD10	14274	-1.054	-0.4219	No
200	KCNJ2	14314	-1.069	-0.4223	No
201	QKI	14346	-1.078	-0.4222	No
202	GDI2	14437	-1.115	-0.4252	No
203	NOG	14503	-1.136	-0.4269	No
204	GOSR2	14548	-1.157	-0.4274	No
205	PCNP	14554	-1.160	-0.4257	No
206	CNTN4	14792	-1.245	-0.4366	No
207	ARID4B	14805	-1.250	-0.4352	No
208	YWHAG	14856	-1.274	-0.4358	No
209	OXR1	14861	-1.275	-0.4339	No
210	THRAP1	14875	-1.280	-0.4325	No
211	ASF1A	14999	-1.333	-0.4370	No
212	MAP4K3	15024	-1.348	-0.4361	No
213	EGLN1	15158	-1.405	-0.4410	Yes
214	CITED2	15170	-1.410	-0.4393	Yes
215	RPS6KA3	15179	-1.415	-0.4374	Yes
216	HNRPD	15203	-1.430	-0.4363	Yes
217	ZC3H6	15240	-1.447	-0.4358	Yes
218	MAP4K4	15300	-1.473	-0.4366	Yes
219	DACT1	15319	-1.480	-0.4351	Yes
220	LAMC1	15336	-1.489	-0.4335	Yes
221	AEBP2	15343	-1.494	-0.4314	Yes
222	EVI5	15462	-1.543	-0.4353	Yes
223	ULK2	15470	-1.548	-0.4331	Yes
224	PIP5K3	15474	-1.549	-0.4307	Yes
225	NRIP1	15475	-1.549	-0.4281	Yes
226	HNRPH2	15482	-1.551	-0.4258	Yes
227	CHD9	15562	-1.591	-0.4275	Yes
228	OLIG3	15579	-1.599	-0.4257	Yes
229	MATR3	15617	-1.615	-0.4251	Yes
230	GOLGA7	15620	-1.616	-0.4225	Yes
231	DNAJB6	15628	-1.620	-0.4202	Yes
232	CLIC4	15634	-1.624	-0.4177	Yes
233	CSNK1G3	15661	-1.636	-0.4165	Yes
234	RABIF	15738	-1.676	-0.4178	Yes
235	SMURF2	15755	-1.683	-0.4159	Yes
236	DMRT2	15806	-1.712	-0.4158	Yes
237	NTF3	15875	-1.751	-0.4166	Yes
238	PSIP1	15927	-1.781	-0.4164	Yes
239	FN1	15948	-1.796	-0.4145	Yes
240	SLC6A1	15962	-1.805	-0.4122	Yes
241	FLI1	15984	-1.817	-0.4104	Yes
242	PPAP2B	16073	-1.868	-0.4121	Yes
243	RAC1	16159	-1.919	-0.4135	Yes
244	ELF2	16259	-1.974	-0.4157	Yes
245	NCOA2	16268	-1.980	-0.4128	Yes
246	PCDH7	16278	-1.986	-0.4100	Yes
247	TSC22D1	16285	-1.992	-0.4070	Yes
248	KLF4	16323	-2.019	-0.4057	Yes
249	FBXO33	16368	-2.054	-0.4047	Yes
250	OGT	16374	-2.058	-0.4015	Yes
251	MAFG	16386	-2.065	-0.3987	Yes
252	WDFY3	16508	-2.150	-0.4018	Yes
253	YTHDF3	16512	-2.156	-0.3983	Yes
254	PPM1B	16513	-2.157	-0.3947	Yes
255	ZIC3	16516	-2.160	-0.3913	Yes
256	PHF6	16528	-2.166	-0.3883	Yes
257	NR3C1	16533	-2.168	-0.3849	Yes
258	E2F3	16574	-2.193	-0.3834	Yes
259	CYP1B1	16630	-2.232	-0.3827	Yes
260	VLDLR	16657	-2.251	-0.3804	Yes
261	BCAP29	16798	-2.351	-0.3842	Yes
262	SMARCAD1	16860	-2.394	-0.3835	Yes
263	NIN	16882	-2.410	-0.3806	Yes
264	GABPA	16927	-2.441	-0.3790	Yes
265	PDPK1	16973	-2.477	-0.3773	Yes
266	TBP	16974	-2.479	-0.3732	Yes
267	CDR2	17023	-2.517	-0.3717	Yes
268	CNOT4	17025	-2.520	-0.3675	Yes
269	BIRC4	17063	-2.550	-0.3653	Yes
270	PHTF2	17081	-2.567	-0.3620	Yes
271	MSN	17115	-2.593	-0.3595	Yes
272	MARCKS	17128	-2.603	-0.3558	Yes
273	LASS6	17140	-2.625	-0.3520	Yes
274	MMD	17179	-2.659	-0.3497	Yes
275	LRP4	17184	-2.667	-0.3455	Yes
276	SEMA3F	17245	-2.723	-0.3442	Yes
277	TSGA14	17247	-2.724	-0.3398	Yes
278	CLASP1	17269	-2.744	-0.3363	Yes
279	ANK3	17287	-2.765	-0.3327	Yes
280	AKAP7	17290	-2.767	-0.3282	Yes
281	TRIM33	17323	-2.795	-0.3253	Yes
282	FBXW7	17337	-2.806	-0.3213	Yes
283	PUM2	17343	-2.810	-0.3169	Yes
284	ADIPOR2	17380	-2.838	-0.3142	Yes
285	RANBP10	17386	-2.847	-0.3097	Yes
286	MYB	17394	-2.858	-0.3054	Yes
287	RECK	17413	-2.876	-0.3016	Yes
288	NEDD1	17414	-2.878	-0.2968	Yes
289	PARP6	17416	-2.878	-0.2920	Yes
290	HNRPU	17440	-2.897	-0.2885	Yes
291	NBR1	17443	-2.899	-0.2838	Yes
292	SESN1	17517	-2.980	-0.2828	Yes
293	RTF1	17546	-3.013	-0.2793	Yes
294	APRIN	17589	-3.058	-0.2765	Yes
295	RAP2C	17595	-3.061	-0.2717	Yes
296	TOB1	17634	-3.095	-0.2687	Yes
297	SERINC1	17696	-3.165	-0.2667	Yes
298	NFYA	17710	-3.180	-0.2622	Yes
299	SLC23A2	17721	-3.193	-0.2574	Yes
300	TIAL1	17722	-3.194	-0.2521	Yes
301	ANLN	17729	-3.202	-0.2471	Yes
302	TCEB1	17730	-3.203	-0.2418	Yes
303	DDX3X	17776	-3.265	-0.2388	Yes
304	SFRS2	17780	-3.269	-0.2335	Yes
305	KLF9	17841	-3.344	-0.2312	Yes
306	LFNG	17896	-3.426	-0.2285	Yes
307	HIPK1	17930	-3.486	-0.2245	Yes
308	CRKL	17939	-3.501	-0.2191	Yes
309	OSBPL11	17943	-3.502	-0.2135	Yes
310	KHDRBS1	17970	-3.552	-0.2090	Yes
311	SLC38A2	17971	-3.552	-0.2031	Yes
312	CNN3	17986	-3.581	-0.1979	Yes
313	KRAS	18026	-3.637	-0.1940	Yes
314	RANBP9	18046	-3.662	-0.1889	Yes
315	CNOT7	18059	-3.681	-0.1835	Yes
316	RAP1B	18070	-3.696	-0.1779	Yes
317	TBK1	18086	-3.732	-0.1725	Yes
318	YWHAB	18089	-3.736	-0.1664	Yes
319	PPP2CA	18149	-3.839	-0.1632	Yes
320	ARL8B	18176	-3.891	-0.1582	Yes
321	NUDT4	18190	-3.911	-0.1524	Yes
322	HNRPK	18220	-3.977	-0.1474	Yes
323	ACACA	18233	-4.013	-0.1413	Yes
324	BCL11B	18292	-4.156	-0.1376	Yes
325	ATP2A2	18299	-4.171	-0.1310	Yes
326	RAB6IP1	18343	-4.274	-0.1262	Yes
327	PRKACB	18370	-4.348	-0.1204	Yes
328	SFRS1	18407	-4.486	-0.1150	Yes
329	RHOT1	18415	-4.531	-0.1078	Yes
330	ARID2	18457	-4.666	-0.1023	Yes
331	BRMS1L	18487	-4.772	-0.0959	Yes
332	CFL2	18494	-4.838	-0.0882	Yes
333	DDEF1	18510	-4.920	-0.0809	Yes
334	HS2ST1	18529	-5.048	-0.0735	Yes
335	ITPR1	18547	-5.257	-0.0656	Yes
336	ICK	18550	-5.291	-0.0570	Yes
337	ZFYVE20	18565	-5.476	-0.0486	Yes
338	CALU	18582	-5.802	-0.0398	Yes
339	SLC6A6	18586	-5.883	-0.0302	Yes
340	CDYL	18596	-6.035	-0.0207	Yes
341	UBQLN1	18597	-6.067	-0.0106	Yes
342	FREQ	18608	-6.962	0.0004	Yes