Details for gene set V$NMYC

Table: GSEA Results Summary

Dataset	Set_03_wtNotch_versus_normalThy.phenotype_wtNotch_versus_normalThy.cls #wtNotch_versus_normalThy.phenotype_wtNotch_versus_normalThy.cls #wtNotch_versus_normalThy_repos
Phenotype	phenotype_wtNotch_versus_normalThy.cls#wtNotch_versus_normalThy_repos
Upregulated in class	wtNotch
GeneSet	V$NMYC_01
Enrichment Score (ES)	0.54729193
Normalized Enrichment Score (NES)	1.5375322
Nominal p-value	0.0
FDR q-value	0.20158345
FWER p-Value	0.62

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TIMM10	610070 1450019	3	9.579	0.0564	Yes
2	VARS2	1410017 3800114 4210270	31	6.628	0.0941	Yes
3	CEBPB	2970019	35	6.268	0.1310	Yes
4	ATAD3A	4050288	44	5.911	0.1655	Yes
5	FBL	5130020	61	5.340	0.1962	Yes
6	VPS16	430064 3390041 6860301	148	4.381	0.2174	Yes
7	PA2G4	2030463	194	4.069	0.2390	Yes
8	G6PC3	1580487 5390253	220	3.945	0.2609	Yes
9	ATP5G1	5290019	245	3.817	0.2822	Yes
10	BCL7C	460050	304	3.591	0.3002	Yes
11	PPAT	1980019	351	3.407	0.3179	Yes
12	FKBP5	2190048	369	3.340	0.3367	Yes
13	HMOX1	1740687	407	3.190	0.3535	Yes
14	PRDX4	3800039	438	3.094	0.3702	Yes
15	IPO4	5050619	442	3.084	0.3882	Yes
16	EIF4B	5390563 5270577	653	2.610	0.3923	Yes
17	HYAL2	1500152	697	2.535	0.4049	Yes
18	LMNB1	5890292 6020008	756	2.426	0.4161	Yes
19	NOL5A	5570139	757	2.422	0.4304	Yes
20	HMGN2	3140091	779	2.385	0.4433	Yes
21	GPD1	2480095	1032	1.991	0.4414	Yes
22	COPS7A	3940458 7000022	1085	1.933	0.4500	Yes
23	HSPE1	3170438	1121	1.886	0.4593	Yes
24	DLX1	360168	1144	1.861	0.4691	Yes
25	SRP72	3990427	1241	1.774	0.4744	Yes
26	ELOVL6	5340746	1279	1.733	0.4826	Yes
27	POLR3E	380152	1338	1.679	0.4894	Yes
28	RPL22	4070070	1401	1.628	0.4956	Yes
29	ZCCHC7	6510592	1453	1.582	0.5022	Yes
30	EIF4G1	4070446	1619	1.417	0.5016	Yes
31	PES1	2470427	1642	1.402	0.5087	Yes
32	GTPBP1	2230541 4560528	1661	1.384	0.5159	Yes
33	LIG3	2940300	1694	1.358	0.5222	Yes
34	FKBP10	1340706	1724	1.328	0.5285	Yes
35	KRTCAP2	5220040	1759	1.298	0.5343	Yes
36	FHOD1	2680279	1942	1.155	0.5313	Yes
37	SH3KBP1	670102 2850458 7000309	1990	1.112	0.5353	Yes
38	HSPD1	60097 2030451	2084	1.045	0.5364	Yes
39	PABPC4	1990170 6760270 5390138	2166	1.001	0.5379	Yes
40	PABPC1	2650180 2690253 6020632 1990270	2171	1.000	0.5436	Yes
41	ANXA6	2190014	2422	0.865	0.5352	Yes
42	MYST3	5270500	2576	0.772	0.5314	Yes
43	GADD45G	2510142	2603	0.758	0.5345	Yes
44	TLE3	580040 4730121	2669	0.728	0.5353	Yes
45	CACNA1D	1740315 4730731	2744	0.682	0.5353	Yes
46	PSEN2	130382	2754	0.678	0.5388	Yes
47	RAMP2	6860037	2783	0.667	0.5412	Yes
48	PPARGC1B	3290114	2786	0.666	0.5451	Yes
49	CDC14A	4050132	2817	0.652	0.5473	Yes
50	B4GALT2	780037	3016	0.565	0.5399	No
51	DUSP4	2690044 2850593	3047	0.555	0.5415	No
52	UBE1	4150139 7050463	3061	0.550	0.5441	No
53	RBBP6	2320129	3246	0.481	0.5370	No
54	MAPKAPK3	630520	3289	0.462	0.5374	No
55	TIMM9	2450484	3293	0.460	0.5400	No
56	NR5A1	70707	3329	0.450	0.5407	No
57	KCNK5	4590504 6860687	3524	0.383	0.5325	No
58	RUNX2	1400193 4230215	3628	0.345	0.5289	No
59	AMPD2	630093 1170070	3701	0.323	0.5269	No
60	BAI2	380632 630113 6650170	3838	0.291	0.5213	No
61	CTBP2	430309 3710079	3854	0.287	0.5221	No
62	ARRDC3	4610390	4025	0.249	0.5144	No
63	RAD9A	110300 1940632 3990390 6040014	4030	0.247	0.5156	No
64	PANK3	3060687	4043	0.245	0.5164	No
65	TIAL1	4150048 6510605	4148	0.228	0.5121	No
66	SOX12	1780037	4325	0.202	0.5038	No
67	ADPRHL1	4150133 6650300	4472	0.182	0.4969	No
68	RCL1	1980408 2680008 3800176	4516	0.178	0.4957	No
69	SOCS5	3830398 7100093	4608	0.167	0.4917	No
70	NR1D1	2360471 770746 6590204	5147	0.122	0.4633	No
71	NRXN1	460408 5340270 6370066	5148	0.122	0.4640	No
72	ANGPT2	1230458 5720706 6040605	5211	0.118	0.4613	No
73	TESK2	6520524	5325	0.111	0.4558	No
74	SEMA7A	2630239 5050593	5594	0.097	0.4419	No
75	GPC3	6180735	5646	0.095	0.4397	No
76	HS3ST3A1	2230497	5988	0.079	0.4216	No
77	XRN2	130603 1230113 4230309	5998	0.079	0.4216	No
78	COL2A1	460446 3940500	6227	0.070	0.4097	No
79	SC5DL	6650390	6447	0.062	0.3982	No
80	TPM2	520735 3870390	6715	0.054	0.3840	No
81	NXPH1	3870546	6731	0.054	0.3835	No
82	RTN4RL2	6450609	6876	0.050	0.3760	No
83	SGTB	460170	6886	0.050	0.3758	No
84	EN2	7000368	6967	0.048	0.3717	No
85	KIAA0427	1690435	7062	0.046	0.3669	No
86	DNAJB9	460114	7132	0.044	0.3634	No
87	ETV1	70735 2940603 5080463	7339	0.040	0.3525	No
88	PLA2G4A	6380364	7405	0.039	0.3492	No
89	LIN28	6590672	7537	0.036	0.3423	No
90	AKAP10	2630504 5910577	7636	0.034	0.3372	No
91	SLC12A5	1980692	7692	0.033	0.3344	No
92	DNMT3A	4050068 4810717	7769	0.032	0.3305	No
93	RNF128	1230300 5670273	7805	0.031	0.3288	No
94	POGK	5290315	7921	0.029	0.3227	No
95	SLC38A5	540093	8146	0.025	0.3107	No
96	HOXC13	4070722	8173	0.024	0.3094	No
97	BMP2K	60541 5570504	8196	0.024	0.3084	No
98	NRAS	6900577	8445	0.019	0.2950	No
99	GRIN2A	6550538	8547	0.018	0.2897	No
100	NKX2-2	4150731	8814	0.013	0.2753	No
101	FGF11	840292	8837	0.013	0.2742	No
102	ADAM10	3780156	8844	0.013	0.2740	No
103	PCDHA10	3830725	8973	0.011	0.2671	No
104	B3GALT2	430136	9017	0.010	0.2648	No
105	NUP153	7000452	9033	0.010	0.2640	No
106	SLC17A2	870593 2810035	9150	0.008	0.2578	No
107	CHRM1	4280619	9255	0.007	0.2522	No
108	LAP3	2570064	9787	-0.001	0.2234	No
109	CTSF	6100021	9893	-0.003	0.2177	No
110	MTHFD1	5900398 6520427	10575	-0.013	0.1809	No
111	ALX4	3870019	10659	-0.014	0.1765	No
112	GPS1	2470037 4760315 6200528 7100040	10663	-0.014	0.1764	No
113	STMN4	2900091	10730	-0.015	0.1729	No
114	LHX9	2350112	10874	-0.018	0.1652	No
115	ABCA1	6290156	10877	-0.018	0.1652	No
116	ENPP6	110524 580563	10945	-0.019	0.1617	No
117	BARHL1	4210113	11111	-0.022	0.1529	No
118	MAX	5220021	11147	-0.022	0.1511	No
119	PRKCE	5700053	11229	-0.024	0.1469	No
120	APOA5	6130471	11412	-0.027	0.1372	No
121	EIF3S1	6130368 6770044	11684	-0.032	0.1227	No
122	NEUROD2	5290097	11801	-0.034	0.1166	No
123	SEPT3	3830022 5290079	11812	-0.035	0.1162	No
124	HPCA	6860010	11860	-0.036	0.1139	No
125	NPM1	4730427	11866	-0.036	0.1138	No
126	FLT3	2640487	12169	-0.042	0.0977	No
127	SFXN2	2650563 3140095 3830762 3870398	12373	-0.047	0.0870	No
128	NEUROD6	4670731	12501	-0.050	0.0804	No
129	SCFD2	2480504	12606	-0.053	0.0750	No
130	NDUFS1	2650253	12678	-0.055	0.0715	No
131	U2AF2	450600 4670128 5420292	12771	-0.059	0.0669	No
132	PLAG1	1450142 3870139 6520039	12927	-0.064	0.0589	No
133	IPO13	3870088	12934	-0.064	0.0589	No
134	WEE1	3390070	13037	-0.067	0.0538	No
135	POU3F1	3710022	13330	-0.080	0.0384	No
136	HHIP	6940438	13401	-0.083	0.0351	No
137	ADAMTS17	6510739	13481	-0.087	0.0313	No
138	SNCAIP	4010551	13535	-0.089	0.0290	No
139	CHST11	6760546	13550	-0.090	0.0288	No
140	PLAGL1	3190082 6200193	13641	-0.095	0.0244	No
141	ZZZ3	780133 2320239 2640452 5080706 6550341	13821	-0.108	0.0154	No
142	CUGBP1	450292 510022 7050176 7050215	13895	-0.113	0.0121	No
143	DLC1	1090632 6450594	13941	-0.116	0.0103	No
144	ZHX2	2900452	14331	-0.152	-0.0099	No
145	JPH1	610739	14363	-0.155	-0.0106	No
146	MCM8	6130743	14383	-0.157	-0.0108	No
147	CLCN2	1940021	14501	-0.169	-0.0161	No
148	RBM3	2360739 5700167	14537	-0.172	-0.0170	No
149	HRH3	6180040	14551	-0.173	-0.0167	No
150	HOXB7	4540706 4610358	14615	-0.184	-0.0190	No
151	ADCY3	2350347 3440242	14667	-0.190	-0.0206	No
152	RPL13A	2680519 5700142	14763	-0.207	-0.0246	No
153	RXRB	1780040 5340438	15496	-0.407	-0.0619	No
154	SEMA3F	5420601 6770731	15618	-0.458	-0.0657	No
155	TEF	1050050 3120397 4060487	15768	-0.529	-0.0707	No
156	SCYL1	5050717	15951	-0.629	-0.0768	No
157	GRK6	1500053	16014	-0.659	-0.0763	No
158	ATP6V0B	2810112	16145	-0.735	-0.0790	No
159	MNT	4920575	16146	-0.736	-0.0747	No
160	PFKFB3	630706	16270	-0.815	-0.0765	No
161	MXD4	4810113	16347	-0.865	-0.0755	No
162	HRSP12	610136 2510133 4280561 2760047	16418	-0.907	-0.0740	No
163	HBP1	2510102 3130010 4210619	16575	-1.003	-0.0765	No
164	TOP1	770471 4060632 6650324	16657	-1.051	-0.0747	No
165	GNA13	4590102	16772	-1.147	-0.0741	No
166	HTF9C	3190048 4120132	16779	-1.153	-0.0676	No
167	USP2	1190292 1240253 4850035	16789	-1.162	-0.0612	No
168	PDK2	2690017	16814	-1.184	-0.0555	No
169	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	16927	-1.270	-0.0541	No
170	GADD45B	2350408	16943	-1.289	-0.0473	No
171	ARF6	3520026	16977	-1.316	-0.0413	No
172	PFN1	6130132	17292	-1.714	-0.0482	No
173	SLC20A1	6420014	17320	-1.735	-0.0394	No
174	AP1GBP1	2510372	17646	-2.322	-0.0433	No
175	GJA1	5220731	18083	-3.378	-0.0470	No
176	STAT3	460040 3710341	18169	-3.701	-0.0298	No
177	RPIA	780079	18223	-3.944	-0.0094	No
178	WBP2	3170128	18414	-5.182	0.0110	No