DatasetSet_03_wtNotch_versus_normalThy.phenotype_wtNotch_versus_normalThy.cls
#wtNotch_versus_normalThy.phenotype_wtNotch_versus_normalThy.cls
#wtNotch_versus_normalThy_repos
Phenotypephenotype_wtNotch_versus_normalThy.cls#wtNotch_versus_normalThy_repos
Upregulated in classnormalThy
GeneSetAGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D
Enrichment Score (ES)-0.5830625
Normalized Enrichment Score (NES)-1.6122398
Nominal p-value0.0
FDR q-value0.07912083
FWER p-Value0.283
Table: GSEA Results Summary



Fig 1: Enrichment plot: AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RBBP7430113 450450 23703092183.9500.0053No
2SLC6A924705204263.1300.0077No
3SDC13440471 63504085222.8760.0150No
4CCND1460524 770309 3120576 69803985472.8230.0260No
5RPS6KA141206477892.3720.0232No
6TNFAIP169405937952.3590.0331No
7DAZAP262001029982.0340.0310No
8LEFTY1329045210681.9500.0357No
9MBNL2345070710871.9290.0431No
10APP251005311711.8410.0466No
11RGMA245071112671.7400.0490No
12INHBB268009213421.6770.0523No
13MRPS25610441 870128 141036816721.3740.0403No
14RPS6KA3198070716821.3680.0458No
15CXXC6281016817661.2960.0469No
16AK24590458 4760195 611009719651.1350.0411No
17SS18L14610180 655006820721.0510.0399No
18PPP3R11190041 157048721701.0000.0390No
19MUTED3140452 4610086 473034822110.9910.0411No
20SUV39H163011222610.9730.0427No
21ASF1A705002022800.9590.0458No
22TRIM361400600 1980082 513003723640.9040.0453No
23DCUN1D1236033223820.8930.0482No
24PBX31300424 3710577 618057524380.8570.0489No
25RALGDS43046326060.7580.0432No
26YWHAZ123071726710.7280.0428No
27NEK9344040227030.7100.0442No
28UBE2J1407013327710.6700.0435No
29YTHDF34540632 4670717 704060928610.6360.0414No
30TRPS187010029830.5790.0374No
31CUGBP26180121 684013930530.5530.0360No
32RAB22A110500 383070732170.4920.0293No
33ADAM9336041132430.4840.0300No
34PCDHA7185001932510.4790.0317No
35PFN2730040 570002633280.4500.0296No
36DMTF15910047 1570497 2480100 662023935680.3700.0182No
37TARDBP870390 235009339820.257-0.0032No
38ZFP36L251018039950.253-0.0027No
39FLT13830167 492043840460.244-0.0044No
40LATS24480593 602049440720.239-0.0047No
41POLQ1050053 219010240990.235-0.0051No
42CDCA7306009741180.232-0.0050No
43DHX4036067241850.221-0.0077No
44ST8SIA2268008242670.208-0.0112No
45LUC7L21850402 635008843630.197-0.0155No
46RHOC206024244780.181-0.0209No
47FOXL2567053745410.175-0.0235No
48MMP24534015445420.175-0.0227No
49RABEP14760427 620046346210.166-0.0263No
50PCAF2230161 2570369 655045146470.163-0.0269No
51SYNC158011446510.163-0.0264No
52NEO1199015446560.162-0.0259No
53NFIB46045047100.157-0.0281No
54ARID4B730754 666002648440.145-0.0347No
55EDNRB4280717 640043548940.140-0.0367No
56OLFM3580112 1050072 407020450780.127-0.0461No
57ARID4A520156 105070750870.126-0.0460No
58GABPB26130450 705073551320.123-0.0479No
59UBE2R2123050451870.119-0.0503No
60NEUROD1306061952840.114-0.0550No
61ESR14060372 586019354200.106-0.0619No
62DPYSL5490033354840.102-0.0649No
63RABGAP1505039755420.100-0.0675No
64SLITRK3591004157080.092-0.0761No
65RGL11500097 690045058030.086-0.0809No
66FNDC3A2690097 329004458050.086-0.0805No
67ZKSCAN1638060559160.082-0.0862No
68PCDHA1940026 54048461430.073-0.0981No
69RSBN1700048761570.073-0.0985No
70MLLT6387016863770.065-0.1101No
71PRRX14120193 448039064310.063-0.1128No
72ECT2383008669510.049-0.1408No
73PURA387015670180.047-0.1441No
74ZBTB4645044170420.046-0.1452No
75MYT1L5670369 666040371050.045-0.1484No
76NPAS3630408 461006672670.041-0.1569No
77TLOC1405030973050.041-0.1588No
78ETV170735 2940603 508046373390.040-0.1604No
79DRD143002574090.039-0.1640No
80PHF63120632 399004176500.034-0.1769No
81LASS65890576 652013876580.034-0.1771No
82BRP44L134060577940.031-0.1843No
83ARHGEF17206000881240.025-0.2021No
84PCDHA3384040282250.023-0.2074No
85EPAS1529015682370.023-0.2079No
86OSBPL53840537 604028682420.023-0.2080No
87BAMBI665046383000.022-0.2110No
88ANKRD13C527020284360.020-0.2183No
89ATP2B2378039784400.020-0.2184No
90LHX8570034785710.017-0.2254No
91RAD23B219067186750.016-0.2309No
92PCDHA10383072589730.011-0.2470No
93ZFPM246007290010.010-0.2484No
94TIPARP5039794360.004-0.2720No
95KCNMA1145040294480.004-0.2726No
96ZMYND11630181 2570019 4850138 536004095890.002-0.2802No
97LHX62360731 33603979697-0.000-0.2860No
98SLC2A45404419930-0.003-0.2986No
99VSX14610605 665011210054-0.005-0.3053No
100PCDHA5297034710288-0.009-0.3179No
101CCNJ87004710319-0.009-0.3195No
102PCDHA12281021510590-0.013-0.3341No
103PRDM884074610648-0.014-0.3371No
104ALX4387001910659-0.014-0.3376No
105TAOK2110575 638069210719-0.015-0.3408No
106ABCA1629015610877-0.018-0.3492No
107ANK2651054611263-0.024-0.3701No
108SSX2IP461017611299-0.025-0.3719No
109PAK7383016411352-0.026-0.3746No
110NR4A32900021 5860095 591003911360-0.026-0.3748No
111E2F5586057511554-0.029-0.3852No
112VLDLR870722 3060047 5340452 655013111555-0.029-0.3851No
113CREB5232036811678-0.032-0.3916No
114ZBTB11652009211830-0.035-0.3996No
115NTN4694039812061-0.040-0.4120No
116PCDHA11151025312203-0.043-0.4194No
117HLF237011312240-0.044-0.4212No
118MEF2C670025 78033812428-0.048-0.4312No
119NEUROD6467073112501-0.050-0.4349No
120PCDHA6780333 237028012619-0.054-0.4410No
121PAPOLA4200286 485011212676-0.055-0.4438No
122PLXNA17006612837-0.061-0.4522No
123PLAG11450142 3870139 652003912927-0.064-0.4568No
124ARHGEF103120593 690067312974-0.065-0.4590No
125OSBPL85060312991-0.066-0.4596No
126WEE1339007013037-0.067-0.4617No
127MINK1586064713258-0.076-0.4734No
128UBE2B478049713329-0.080-0.4768No
129RB1CC1510494 710007213362-0.081-0.4782No
130PGBD5119004713371-0.082-0.4783No
131EPHA2589005613432-0.085-0.4812No
132KLF121660095 4810288 5340546 652028613492-0.087-0.4840No
133MARCH86039713652-0.096-0.4922No
134TRPV6401071713726-0.101-0.4958No
135RAB11FIP1247033313876-0.112-0.5034No
136PARP8415020413947-0.117-0.5067No
137CYP26B1263014214006-0.121-0.5093No
138BRMS1L611060914095-0.128-0.5135No
139RPS6KA52120563 704054614110-0.130-0.5137No
140DDHD13450241 3940523 638015614189-0.137-0.5174No
141SENP1610053714216-0.140-0.5182No
142FGD53520438 406050014278-0.146-0.5209No
143MTUS1780348 492060914359-0.155-0.5245No
144RBL1313037214394-0.158-0.5257No
145KLHL18456007514480-0.167-0.5296No
146KPNA2345011414510-0.169-0.5304No
147NR2C2610009714785-0.211-0.5444No
148PLEKHA3508006814863-0.226-0.5476No
149NR4A26027314939-0.245-0.5506No
150ATAD2870242 226068715260-0.328-0.5666No
151RAB6A3840463 478073115308-0.341-0.5677No
152TAL1704023915339-0.351-0.5678No
153RAB11A536007915342-0.352-0.5664No
154SAR1B251027315384-0.364-0.5670No
155CRIM113049115400-0.368-0.5662No
156SNF1LK611040315440-0.381-0.5667No
157LEF12470082 710028815463-0.392-0.5662No
158GNB54480736 6550722 677046315485-0.402-0.5656No
159ZNF385450176 481035815598-0.448-0.5697No
160MKNK21240020 527009215668-0.482-0.5714No
161YPEL2556060915730-0.512-0.5725No
162E2F7420005615843-0.563-0.5761No
163PURB536013815929-0.615-0.5781No
164CFL2380239 620036816022-0.663-0.5802Yes
165SF4383034116069-0.693-0.5797Yes
166COL23A1203035816070-0.693-0.5767Yes
167RDBP659004416073-0.694-0.5738Yes
168OXR12370039 319070616099-0.710-0.5720Yes
169MNT492057516146-0.736-0.5713Yes
170RNF6264003516152-0.739-0.5684Yes
171DNAJA22630253 686035816235-0.794-0.5694Yes
172ORMDL3134071116371-0.883-0.5729Yes
173MTMR31050014 492018016463-0.938-0.5738Yes
174SPOP45003516478-0.950-0.5704Yes
175CRK1230162 478012816534-0.989-0.5691Yes
176PLEKHM11050161 199075016569-1.001-0.5666Yes
177MAPK92060273 3780209 407039716570-1.002-0.5623Yes
178AEBP2297060316681-1.066-0.5636Yes
179SMAD2420059216721-1.104-0.5609Yes
180MECP2194045016762-1.137-0.5582Yes
181ATXN1555015616822-1.187-0.5562Yes
182FRMD4A219017616892-1.242-0.5546Yes
183FEM1C60300 6130717 698016416931-1.273-0.5511Yes
184TUSC2158025317089-1.460-0.5533Yes
185PERQ1134016417172-1.554-0.5510Yes
186BCL11A686036917185-1.577-0.5448Yes
187MAP3K14589043517267-1.682-0.5419Yes
188WDR372630519 684034717300-1.721-0.5362Yes
189HRBL1850102 3830253 478017617333-1.765-0.5302Yes
190RASSF22480079 572054617340-1.774-0.5228Yes
191IQWD116047517370-1.819-0.5165Yes
192NFYA586036817556-2.131-0.5173Yes
193DUSP2237018417558-2.134-0.5081Yes
194RUNX1384071117599-2.206-0.5007Yes
195HN1336015617603-2.212-0.4912Yes
196MKRN1141009717609-2.221-0.4819Yes
197ASF1B659070617648-2.327-0.4738Yes
198HIC2401043317664-2.356-0.4644Yes
199TMEM16F586000817783-2.591-0.4595Yes
200ZDHHC9394020417851-2.740-0.4513Yes
201RRAGD67007517898-2.843-0.4414Yes
202ULK1610031517921-2.898-0.4300Yes
203MAP3K11700003917928-2.933-0.4176Yes
204FOXJ2245044118029-3.166-0.4093Yes
205TLE41450064 150051918134-3.567-0.3995Yes
206BCL2L11780044 420060118141-3.609-0.3841Yes
207IRF2539004418151-3.645-0.3688Yes
208CREBL1134054618186-3.784-0.3542Yes
209TOB2124046518216-3.905-0.3388Yes
210IHPK1134005318235-4.035-0.3222Yes
211ZFYVE26686015218236-4.044-0.3046Yes
212WDR45166053818250-4.116-0.2875Yes
213KLF13467056318309-4.420-0.2714Yes
214MCL1166067218331-4.573-0.2527Yes
215BCL694010018397-5.006-0.2345Yes
216PPP6C245067018401-5.045-0.2127Yes
217PLAGL2177014818469-5.739-0.1914Yes
218MAML1276000818494-5.971-0.1668Yes
219ARHGEF18212027918535-6.700-0.1398Yes
220PHF2406030018540-6.759-0.1107Yes
221CCND2534016718589-8.378-0.0769Yes
222TOX344005318599-8.651-0.0398Yes
223BTG14200735 6040131 620013318614-9.3590.0001Yes
Table: GSEA details [plain text format]



Fig 2: AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D: Random ES distribution   
Gene set null distribution of ES for AGCACTT,MIR-93,MIR-302A,MIR-302B,MIR-302C,MIR-302D,MIR-372,MIR-373,MIR-520E,MIR-520A,MIR-526B,MIR-520B,MIR-520C,MIR-520D