Details for gene set V$E2F

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #wtNotch_versus_absentNotch
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#wtNotch_versus_absentNotch
Upregulated in class	absentNotch
GeneSet	V$E2F_Q6
Enrichment Score (ES)	-0.50766766
Normalized Enrichment Score (NES)	-1.4962417
Nominal p-value	0.0018083183
FDR q-value	0.17104563
FWER p-Value	0.903

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RRM2	6350059 6940162	318	1.562	0.0042	No
2	USP52	3710215 6380133	392	1.453	0.0201	No
3	ATF5	5670685	587	1.226	0.0264	No
4	HMGN2	3140091	762	1.096	0.0320	No
5	SFRS10	6130528 6400438 7040112	827	1.047	0.0429	No
6	DNMT1	2260097	1304	0.791	0.0280	No
7	CDT1	3780682	1385	0.761	0.0341	No
8	SYNGR4	6520450	1416	0.749	0.0427	No
9	DNAJC11	360465 3390215	1489	0.719	0.0486	No
10	POLD1	4830026	1667	0.641	0.0478	No
11	PHF5A	2690519	1760	0.607	0.0512	No
12	PHF13	450435	1868	0.572	0.0532	No
13	RANBP1	430215 1090180	2036	0.519	0.0513	No
14	PRPS1	6350129	2061	0.513	0.0570	No
15	RPS6KA5	2120563 7040546	2150	0.485	0.0589	No
16	HIST1H2BK	6130433	2192	0.474	0.0632	No
17	SFRS7	2760408	2235	0.461	0.0672	No
18	DDB2	3520341 4610168 4850184 4920717	2253	0.458	0.0726	No
19	MAZ	3360121 6940750	2365	0.423	0.0723	No
20	ERBB2IP	580253 1090672	2378	0.419	0.0774	No
21	HIST1H4A	1940600	2389	0.416	0.0826	No
22	POLR2A	5220647	2468	0.395	0.0838	No
23	SUMO1	1990364 2760338 6380195	2474	0.393	0.0889	No
24	CDC45L	70537 3130114	2538	0.378	0.0907	No
25	HCN3	3940438 6840750	2541	0.377	0.0957	No
26	TBX6	4730139 6840647	2683	0.346	0.0928	No
27	RAD51	6110450 6980280	3044	0.281	0.0772	No
28	ARID4A	520156 1050707	3092	0.274	0.0784	No
29	STAG2	4540132	3252	0.245	0.0732	No
30	SEMA6A	2690138 3060021	3366	0.230	0.0702	No
31	SEMA5A	6200110 6520435	3429	0.221	0.0698	No
32	FHOD1	2680279	3605	0.199	0.0631	No
33	NCL	2360463 4540279	3682	0.191	0.0616	No
34	HNRPA1	4670398 5050687	3753	0.184	0.0603	No
35	KCND2	1170128 2100112	3779	0.182	0.0615	No
36	MXD3	6220014	3859	0.174	0.0596	No
37	GPRC5B	2760114	3924	0.168	0.0584	No
38	CORT	360008 2340092	4478	0.124	0.0302	No
39	ING3	110438 2060390	4523	0.121	0.0294	No
40	CDC6	4570296 5360600	4536	0.120	0.0304	No
41	CCNT1	2450563 5390184	4547	0.120	0.0315	No
42	HNRPR	2320440 2900601 4610008	5017	0.094	0.0074	No
43	NRP2	4070400 5860041 6650446	5139	0.089	0.0021	No
44	HS6ST3	5910138	5144	0.089	0.0031	No
45	FBXO5	2630551	5159	0.088	0.0035	No
46	GMNN	2630148	5396	0.078	-0.0082	No
47	PHF15	6550066 6860673	5863	0.062	-0.0326	No
48	INSM1	3450671	6420	0.047	-0.0620	No
49	TOPBP1	6020333	6541	0.044	-0.0679	No
50	TREX2	4920707	6568	0.044	-0.0687	No
51	STK35	2360121	6835	0.038	-0.0826	No
52	GRIA4	2640131	6933	0.037	-0.0874	No
53	NUP153	7000452	7024	0.035	-0.0918	No
54	TYRO3	3130193	7525	0.026	-0.1185	No
55	HNRPD	4120021	7947	0.019	-0.1410	No
56	NELL2	2340725 4280301 5420008	8279	0.014	-0.1588	No
57	EPHB1	4610056	8294	0.014	-0.1593	No
58	POLE2	6110041	8612	0.009	-0.1764	No
59	ILF3	940722 3190647 6520110	8663	0.008	-0.1790	No
60	IPO7	2190746	8681	0.008	-0.1798	No
61	ZBTB4	6450441	9073	0.002	-0.2009	No
62	CASP8AP2	5910593	9128	0.002	-0.2038	No
63	MCM7	3290292 5220056	9312	-0.001	-0.2137	No
64	DNAJC9	6130019	9348	-0.001	-0.2156	No
65	ARHGAP6	2060121	9812	-0.008	-0.2406	No
66	MYH10	2640673	9871	-0.008	-0.2436	No
67	PODN	3710068	9972	-0.010	-0.2489	No
68	CBX5	3830072 6290167	10003	-0.010	-0.2504	No
69	RHD	4050168	10487	-0.018	-0.2763	No
70	GABRB3	4150164	10569	-0.019	-0.2804	No
71	PAX6	1190025	10695	-0.021	-0.2869	No
72	ACBD6	4200446	10930	-0.024	-0.2992	No
73	MCM8	6130743	11125	-0.027	-0.3094	No
74	HOXC10	5360170	11438	-0.033	-0.3258	No
75	YBX2	3520441	11472	-0.033	-0.3271	No
76	E2F7	4200056	12149	-0.047	-0.3631	No
77	ASXL2	130670	12176	-0.048	-0.3639	No
78	SP3	3840338	12229	-0.049	-0.3660	No
79	CLSPN	2190239 2630687 5550632	12305	-0.051	-0.3694	No
80	PRPF4B	940181 2570300	12694	-0.061	-0.3896	No
81	FMO4	360735	12707	-0.061	-0.3894	No
82	DMD	1740041 3990332	12741	-0.062	-0.3903	No
83	SMAD6	870504	13179	-0.076	-0.4129	No
84	PAQR4	730736	13188	-0.076	-0.4123	No
85	STAG1	1190300 1400722 4590100	13358	-0.083	-0.4203	No
86	PCSK1	2350148	13404	-0.085	-0.4216	No
87	UXT	110019 5080066	13574	-0.091	-0.4295	No
88	PVRL1	2570167 5220519 5890500 3190309	13799	-0.101	-0.4403	No
89	WEE1	3390070	13909	-0.107	-0.4447	No
90	HNRPUL1	2120008 4920408 5570180 6370609 6770403	14128	-0.121	-0.4548	No
91	RQCD1	1850139	14282	-0.131	-0.4613	No
92	SNRPD1	4480162	14410	-0.140	-0.4663	No
93	PRKDC	1400072 4230541	14641	-0.161	-0.4765	No
94	ADAMTS2	2650025 6370133 6840670	14747	-0.169	-0.4799	No
95	SLC6A4	2230372	14748	-0.169	-0.4776	No
96	KCNA6	450291 1400086 1660291 2470576	14806	-0.174	-0.4783	No
97	UFD1L	870020	14930	-0.191	-0.4823	No
98	E2F3	50162 460180	15049	-0.203	-0.4859	No
99	EED	2320373	15059	-0.204	-0.4836	No
100	USP37	2470433	15128	-0.212	-0.4844	No
101	EFNA5	460707 2190519	15207	-0.225	-0.4855	No
102	JPH1	610739	15320	-0.240	-0.4883	No
103	HIRA	4480609 5270167	15399	-0.252	-0.4891	No
104	EZH2	6130605 6380524	15457	-0.264	-0.4886	No
105	HIST1H2AH	3710333	15665	-0.303	-0.4956	No
106	POLA2	940519	15687	-0.308	-0.4925	No
107	ATAD2	870242 2260687	15795	-0.334	-0.4938	No
108	BRMS1L	6110609	15850	-0.345	-0.4920	No
109	MCM2	5050139	16009	-0.385	-0.4952	No
110	MCM6	60092 540181 6510110	16029	-0.390	-0.4909	No
111	PPP1CC	6380300 2510647	16339	-0.479	-0.5011	Yes
112	NOLC1	2350195	16397	-0.494	-0.4974	Yes
113	SLC38A1	520465	16424	-0.502	-0.4920	Yes
114	MRPL40	2370215	16472	-0.515	-0.4874	Yes
115	PPP1R8	6290292	16533	-0.540	-0.4833	Yes
116	RAB11B	3990609	16544	-0.544	-0.4764	Yes
117	AK2	4590458 4760195 6110097	16550	-0.545	-0.4692	Yes
118	MCM4	2760673 5420711	16712	-0.605	-0.4696	Yes
119	PIM1	630047	16761	-0.621	-0.4637	Yes
120	SLCO3A1	1050408 2370156 6110072	16768	-0.624	-0.4555	Yes
121	UNG	3130110 6100364	16876	-0.670	-0.4521	Yes
122	MCM3	5570068	16965	-0.703	-0.4472	Yes
123	ACO2	4230600	17123	-0.778	-0.4451	Yes
124	MSH2	6180273	17144	-0.787	-0.4354	Yes
125	CDCA7	3060097	17155	-0.793	-0.4251	Yes
126	PCNA	940754	17203	-0.821	-0.4164	Yes
127	KPNB1	1690138	17230	-0.833	-0.4063	Yes
128	H2AFZ	1470168	17329	-0.879	-0.3996	Yes
129	POLE4	6860097	17428	-0.944	-0.3920	Yes
130	SFRS2	50707 380593	17526	-0.992	-0.3836	Yes
131	FANCD2	1850280 6840348	17580	-1.003	-0.3728	Yes
132	NUP62	1240128	17593	-1.009	-0.3596	Yes
133	POLD3	6400278	17691	-1.066	-0.3502	Yes
134	CTCF	5340017	17696	-1.070	-0.3358	Yes
135	RBL1	3130372	17703	-1.074	-0.3214	Yes
136	CDC25A	3800184	17772	-1.122	-0.3097	Yes
137	PHC1	520195	17845	-1.184	-0.2974	Yes
138	HTF9C	3190048 4120132	17852	-1.188	-0.2814	Yes
139	IL4I1	3190161	17853	-1.188	-0.2651	Yes
140	NASP	2260139 2940369 5130707	17862	-1.193	-0.2492	Yes
141	ALDH6A1	1770746	17943	-1.249	-0.2364	Yes
142	SFRS1	2360440	18010	-1.309	-0.2221	Yes
143	STMN1	1990717	18068	-1.364	-0.2065	Yes
144	ZCCHC8	2260332 2350487	18085	-1.377	-0.1885	Yes
145	E2F1	5360093	18222	-1.543	-0.1747	Yes
146	AP4M1	70609 3440128	18291	-1.638	-0.1559	Yes
147	GSPT1	5420050	18376	-1.825	-0.1355	Yes
148	UGCGL1	4230072	18385	-1.856	-0.1105	Yes
149	DCK	6900411	18435	-1.963	-0.0862	Yes
150	PPM1D	1690193	18460	-2.052	-0.0594	Yes
151	SOAT1	1190019	18490	-2.177	-0.0311	Yes
152	TMPO	4050494	18577	-2.767	0.0021	Yes