Details for gene set V$E2F

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_wtNotch.phenotype_absentNotch_versus_wtNotch.cls #wtNotch_versus_absentNotch
Phenotype	phenotype_absentNotch_versus_wtNotch.cls#wtNotch_versus_absentNotch
Upregulated in class	absentNotch
GeneSet	V$E2F_Q4
Enrichment Score (ES)	-0.5099185
Normalized Enrichment Score (NES)	-1.5159179
Nominal p-value	0.0016891892
FDR q-value	0.16302995
FWER p-Value	0.844

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RRM2	6350059 6940162	318	1.562	0.0043	No
2	USP52	3710215 6380133	392	1.453	0.0203	No
3	ATF5	5670685	587	1.226	0.0266	No
4	HMGN2	3140091	762	1.096	0.0323	No
5	SFRS10	6130528 6400438 7040112	827	1.047	0.0432	No
6	DNMT1	2260097	1304	0.791	0.0283	No
7	CDT1	3780682	1385	0.761	0.0344	No
8	SYNGR4	6520450	1416	0.749	0.0431	No
9	DNAJC11	360465 3390215	1489	0.719	0.0491	No
10	POLD1	4830026	1667	0.641	0.0483	No
11	PHF5A	2690519	1760	0.607	0.0517	No
12	PHF13	450435	1868	0.572	0.0538	No
13	RANBP1	430215 1090180	2036	0.519	0.0519	No
14	PRPS1	6350129	2061	0.513	0.0576	No
15	RPS6KA5	2120563 7040546	2150	0.485	0.0595	No
16	HIST1H2BK	6130433	2192	0.474	0.0638	No
17	SFRS7	2760408	2235	0.461	0.0679	No
18	DDB2	3520341 4610168 4850184 4920717	2253	0.458	0.0733	No
19	MAZ	3360121 6940750	2365	0.423	0.0731	No
20	ERBB2IP	580253 1090672	2378	0.419	0.0782	No
21	POLR2A	5220647	2468	0.395	0.0788	No
22	SUMO1	1990364 2760338 6380195	2474	0.393	0.0839	No
23	CDC45L	70537 3130114	2538	0.378	0.0857	No
24	HCN3	3940438 6840750	2541	0.377	0.0908	No
25	TBX6	4730139 6840647	2683	0.346	0.0879	No
26	RAD51	6110450 6980280	3044	0.281	0.0723	No
27	ARID4A	520156 1050707	3092	0.274	0.0735	No
28	STAG2	4540132	3252	0.245	0.0683	No
29	SEMA5A	6200110 6520435	3429	0.221	0.0618	No
30	FHOD1	2680279	3605	0.199	0.0550	No
31	NCL	2360463 4540279	3682	0.191	0.0535	No
32	HNRPA1	4670398 5050687	3753	0.184	0.0523	No
33	KCND2	1170128 2100112	3779	0.182	0.0534	No
34	MXD3	6220014	3859	0.174	0.0515	No
35	GPRC5B	2760114	3924	0.168	0.0504	No
36	CORT	360008 2340092	4478	0.124	0.0221	No
37	ING3	110438 2060390	4523	0.121	0.0214	No
38	CDC6	4570296 5360600	4536	0.120	0.0224	No
39	CCNT1	2450563 5390184	4547	0.120	0.0235	No
40	HNRPR	2320440 2900601 4610008	5017	0.094	-0.0006	No
41	NRP2	4070400 5860041 6650446	5139	0.089	-0.0059	No
42	HS6ST3	5910138	5144	0.089	-0.0049	No
43	FBXO5	2630551	5159	0.088	-0.0045	No
44	GMNN	2630148	5396	0.078	-0.0162	No
45	PHF15	6550066 6860673	5863	0.062	-0.0406	No
46	INSM1	3450671	6420	0.047	-0.0700	No
47	TOPBP1	6020333	6541	0.044	-0.0759	No
48	TREX2	4920707	6568	0.044	-0.0767	No
49	STK35	2360121	6835	0.038	-0.0906	No
50	GRIA4	2640131	6933	0.037	-0.0954	No
51	NUP153	7000452	7024	0.035	-0.0998	No
52	TYRO3	3130193	7525	0.026	-0.1265	No
53	HNRPD	4120021	7947	0.019	-0.1490	No
54	CRK	1230162 4780128	8080	0.017	-0.1559	No
55	NELL2	2340725 4280301 5420008	8279	0.014	-0.1665	No
56	EPHB1	4610056	8294	0.014	-0.1670	No
57	POLE2	6110041	8612	0.009	-0.1841	No
58	ILF3	940722 3190647 6520110	8663	0.008	-0.1867	No
59	IPO7	2190746	8681	0.008	-0.1875	No
60	ABI2	940368 4200092	8717	0.007	-0.1893	No
61	ZBTB4	6450441	9073	0.002	-0.2085	No
62	CASP8AP2	5910593	9128	0.002	-0.2114	No
63	MCM7	3290292 5220056	9312	-0.001	-0.2213	No
64	DNAJC9	6130019	9348	-0.001	-0.2232	No
65	WNT3	2360685	9398	-0.002	-0.2258	No
66	ARHGAP6	2060121	9812	-0.008	-0.2481	No
67	MYH10	2640673	9871	-0.008	-0.2511	No
68	PODN	3710068	9972	-0.010	-0.2564	No
69	CBX5	3830072 6290167	10003	-0.010	-0.2579	No
70	RHD	4050168	10487	-0.018	-0.2838	No
71	GABRB3	4150164	10569	-0.019	-0.2879	No
72	PAX6	1190025	10695	-0.021	-0.2944	No
73	ACBD6	4200446	10930	-0.024	-0.3067	No
74	MCM8	6130743	11125	-0.027	-0.3169	No
75	HOXC10	5360170	11438	-0.033	-0.3333	No
76	YBX2	3520441	11472	-0.033	-0.3346	No
77	CHD2	4070039	11727	-0.038	-0.3479	No
78	E2F7	4200056	12149	-0.047	-0.3700	No
79	ASXL2	130670	12176	-0.048	-0.3708	No
80	SP3	3840338	12229	-0.049	-0.3729	No
81	CLSPN	2190239 2630687 5550632	12305	-0.051	-0.3763	No
82	FMO4	360735	12707	-0.061	-0.3972	No
83	DMD	1740041 3990332	12741	-0.062	-0.3981	No
84	SMAD6	870504	13179	-0.076	-0.4207	No
85	PAQR4	730736	13188	-0.076	-0.4201	No
86	STAG1	1190300 1400722 4590100	13358	-0.083	-0.4281	No
87	PCSK1	2350148	13404	-0.085	-0.4294	No
88	UXT	110019 5080066	13574	-0.091	-0.4373	No
89	PVRL1	2570167 5220519 5890500 3190309	13799	-0.101	-0.4480	No
90	WEE1	3390070	13909	-0.107	-0.4524	No
91	HNRPUL1	2120008 4920408 5570180 6370609 6770403	14128	-0.121	-0.4626	No
92	RQCD1	1850139	14282	-0.131	-0.4691	No
93	SNRPD1	4480162	14410	-0.140	-0.4740	No
94	PRKDC	1400072 4230541	14641	-0.161	-0.4843	No
95	ADAMTS2	2650025 6370133 6840670	14747	-0.169	-0.4876	No
96	SLC6A4	2230372	14748	-0.169	-0.4853	No
97	KCNA6	450291 1400086 1660291 2470576	14806	-0.174	-0.4860	No
98	UFD1L	870020	14930	-0.191	-0.4900	No
99	E2F3	50162 460180	15049	-0.203	-0.4936	No
100	EED	2320373	15059	-0.204	-0.4913	No
101	USP37	2470433	15128	-0.212	-0.4921	No
102	EFNA5	460707 2190519	15207	-0.225	-0.4932	No
103	JPH1	610739	15320	-0.240	-0.4960	No
104	HIRA	4480609 5270167	15399	-0.252	-0.4967	No
105	EZH2	6130605 6380524	15457	-0.264	-0.4962	No
106	HIST1H2AH	3710333	15665	-0.303	-0.5032	No
107	POLA2	940519	15687	-0.308	-0.5001	No
108	ATAD2	870242 2260687	15795	-0.334	-0.5013	No
109	BRMS1L	6110609	15850	-0.345	-0.4995	No
110	EPC1	1570050 5290095 6900193	15993	-0.380	-0.5020	No
111	MCM2	5050139	16009	-0.385	-0.4975	No
112	MCM6	60092 540181 6510110	16029	-0.390	-0.4932	No
113	PPP1CC	6380300 2510647	16339	-0.479	-0.5033	Yes
114	NOLC1	2350195	16397	-0.494	-0.4996	Yes
115	SLC38A1	520465	16424	-0.502	-0.4941	Yes
116	MRPL40	2370215	16472	-0.515	-0.4896	Yes
117	PPP1R8	6290292	16533	-0.540	-0.4854	Yes
118	RAB11B	3990609	16544	-0.544	-0.4785	Yes
119	AK2	4590458 4760195 6110097	16550	-0.545	-0.4712	Yes
120	MCM4	2760673 5420711	16712	-0.605	-0.4717	Yes
121	PIM1	630047	16761	-0.621	-0.4657	Yes
122	SLCO3A1	1050408 2370156 6110072	16768	-0.624	-0.4575	Yes
123	UNG	3130110 6100364	16876	-0.670	-0.4540	Yes
124	MCM3	5570068	16965	-0.703	-0.4491	Yes
125	ACO2	4230600	17123	-0.778	-0.4470	Yes
126	MSH2	6180273	17144	-0.787	-0.4372	Yes
127	CDCA7	3060097	17155	-0.793	-0.4269	Yes
128	PCNA	940754	17203	-0.821	-0.4181	Yes
129	KPNB1	1690138	17230	-0.833	-0.4081	Yes
130	H2AFZ	1470168	17329	-0.879	-0.4013	Yes
131	POLE4	6860097	17428	-0.944	-0.3936	Yes
132	SFRS2	50707 380593	17526	-0.992	-0.3852	Yes
133	FANCD2	1850280 6840348	17580	-1.003	-0.3743	Yes
134	NUP62	1240128	17593	-1.009	-0.3611	Yes
135	POLD3	6400278	17691	-1.066	-0.3516	Yes
136	CTCF	5340017	17696	-1.070	-0.3371	Yes
137	RBL1	3130372	17703	-1.074	-0.3227	Yes
138	CDC25A	3800184	17772	-1.122	-0.3110	Yes
139	PHC1	520195	17845	-1.184	-0.2986	Yes
140	HTF9C	3190048 4120132	17852	-1.188	-0.2826	Yes
141	IL4I1	3190161	17853	-1.188	-0.2662	Yes
142	NASP	2260139 2940369 5130707	17862	-1.193	-0.2503	Yes
143	ALDH6A1	1770746	17943	-1.249	-0.2374	Yes
144	SFRS1	2360440	18010	-1.309	-0.2230	Yes
145	STMN1	1990717	18068	-1.364	-0.2073	Yes
146	ZCCHC8	2260332 2350487	18085	-1.377	-0.1893	Yes
147	E2F1	5360093	18222	-1.543	-0.1754	Yes
148	AP4M1	70609 3440128	18291	-1.638	-0.1566	Yes
149	GSPT1	5420050	18376	-1.825	-0.1360	Yes
150	UGCGL1	4230072	18385	-1.856	-0.1109	Yes
151	DCK	6900411	18435	-1.963	-0.0866	Yes
152	PPM1D	1690193	18460	-2.052	-0.0596	Yes
153	SOAT1	1190019	18490	-2.177	-0.0313	Yes
154	TMPO	4050494	18577	-2.767	0.0021	Yes