Details for gene set V$NMYC

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	truncNotch
GeneSet	V$NMYC_01
Enrichment Score (ES)	0.5286788
Normalized Enrichment Score (NES)	1.4329286
Nominal p-value	0.004524887
FDR q-value	0.83052975
FWER p-Value	0.996

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	VARS2	1410017 3800114 4210270	15	10.218	0.0456	Yes
2	CEBPB	2970019	19	9.933	0.0906	Yes
3	G6PC3	1580487 5390253	24	9.367	0.1330	Yes
4	FBL	5130020	63	7.719	0.1660	Yes
5	BCL7C	460050	67	7.545	0.2002	Yes
6	ATAD3A	4050288	138	6.485	0.2259	Yes
7	IPO4	5050619	199	5.881	0.2493	Yes
8	ATP5G1	5290019	253	5.555	0.2717	Yes
9	PA2G4	2030463	277	5.334	0.2947	Yes
10	COPS7A	3940458 7000022	299	5.204	0.3172	Yes
11	HMOX1	1740687	484	4.425	0.3274	Yes
12	VPS16	430064 3390041 6860301	570	4.133	0.3416	Yes
13	PSEN2	130382	575	4.117	0.3601	Yes
14	PRDX4	3800039	610	3.963	0.3762	Yes
15	PPAT	1980019	630	3.927	0.3931	Yes
16	HSPE1	3170438	670	3.793	0.4082	Yes
17	TIMM10	610070 1450019	680	3.769	0.4248	Yes
18	ANXA6	2190014	882	3.265	0.4288	Yes
19	EIF4B	5390563 5270577	1080	2.905	0.4313	Yes
20	HYAL2	1500152	1219	2.671	0.4360	Yes
21	NOL5A	5570139	1390	2.409	0.4377	Yes
22	SH3KBP1	670102 2850458 7000309	1392	2.405	0.4486	Yes
23	GPD1	2480095	1502	2.277	0.4530	Yes
24	GTPBP1	2230541 4560528	1603	2.134	0.4573	Yes
25	MYST3	5270500	1680	2.048	0.4625	Yes
26	FKBP5	2190048	1785	1.947	0.4657	Yes
27	HMGN2	3140091	1787	1.946	0.4745	Yes
28	PABPC4	1990170 6760270 5390138	1804	1.930	0.4824	Yes
29	FKBP10	1340706	1936	1.778	0.4834	Yes
30	RPL22	4070070	1952	1.764	0.4906	Yes
31	LMNB1	5890292 6020008	1995	1.723	0.4961	Yes
32	TLE3	580040 4730121	2021	1.697	0.5025	Yes
33	POLR3E	380152	2025	1.692	0.5100	Yes
34	DLX1	360168	2111	1.576	0.5126	Yes
35	NR5A1	70707	2168	1.521	0.5164	Yes
36	PABPC1	2650180 2690253 6020632 1990270	2199	1.494	0.5216	Yes
37	IPO13	3870088	2301	1.411	0.5226	Yes
38	SRP72	3990427	2307	1.408	0.5287	Yes
39	AMPD2	630093 1170070	2538	1.171	0.5215	No
40	DUSP4	2690044 2850593	2653	1.086	0.5203	No
41	FHOD1	2680279	2670	1.072	0.5243	No
42	KRTCAP2	5220040	2749	1.024	0.5247	No
43	PES1	2470427	2843	0.985	0.5242	No
44	ATP6V0B	2810112	2957	0.914	0.5222	No
45	GRK6	1500053	2999	0.884	0.5240	No
46	HSPD1	60097 2030451	3056	0.843	0.5248	No
47	GADD45G	2510142	3166	0.773	0.5224	No
48	ARF6	3520026	3174	0.768	0.5255	No
49	CACNA1D	1740315 4730731	3181	0.766	0.5286	No
50	UBE1	4150139 7050463	3393	0.649	0.5201	No
51	SCYL1	5050717	3408	0.641	0.5223	No
52	AKAP10	2630504 5910577	3567	0.575	0.5163	No
53	TPM2	520735 3870390	3689	0.528	0.5122	No
54	NR1D1	2360471 770746 6590204	3902	0.461	0.5028	No
55	BARHL1	4210113	4042	0.421	0.4972	No
56	SLC38A5	540093	4156	0.391	0.4928	No
57	DLC1	1090632 6450594	4172	0.387	0.4938	No
58	SOCS5	3830398 7100093	4178	0.386	0.4952	No
59	ELOVL6	5340746	4182	0.386	0.4968	No
60	TIMM9	2450484	4219	0.376	0.4966	No
61	LIG3	2940300	4302	0.354	0.4938	No
62	B4GALT2	780037	4344	0.344	0.4931	No
63	NRAS	6900577	4377	0.338	0.4929	No
64	RNF128	1230300 5670273	4447	0.327	0.4906	No
65	CTSF	6100021	4493	0.318	0.4896	No
66	BAI2	380632 630113 6650170	4603	0.299	0.4851	No
67	MNT	4920575	4645	0.292	0.4842	No
68	RAD9A	110300 1940632 3990390 6040014	4716	0.279	0.4817	No
69	TESK2	6520524	4751	0.273	0.4811	No
70	RUNX2	1400193 4230215	4901	0.250	0.4741	No
71	KCNK5	4590504 6860687	5194	0.214	0.4593	No
72	TIAL1	4150048 6510605	5411	0.191	0.4484	No
73	ADPRHL1	4150133 6650300	5437	0.187	0.4479	No
74	DNMT3A	4050068 4810717	5469	0.184	0.4471	No
75	NXPH1	3870546	5494	0.181	0.4466	No
76	BMP2K	60541 5570504	5709	0.162	0.4357	No
77	PLAGL1	3190082 6200193	6118	0.128	0.4142	No
78	ETV1	70735 2940603 5080463	6155	0.127	0.4128	No
79	MAPKAPK3	630520	6236	0.122	0.4090	No
80	RTN4RL2	6450609	6518	0.107	0.3943	No
81	DNAJB9	460114	6522	0.107	0.3946	No
82	GPC3	6180735	6583	0.104	0.3918	No
83	RPL13A	2680519 5700142	6606	0.103	0.3911	No
84	GRIN2A	6550538	6647	0.101	0.3894	No
85	SFXN2	2650563 3140095 3830762 3870398	6882	0.091	0.3771	No
86	SOX12	1780037	6975	0.087	0.3725	No
87	LAP3	2570064	7125	0.081	0.3648	No
88	HS3ST3A1	2230497	7314	0.074	0.3549	No
89	ARRDC3	4610390	7538	0.066	0.3431	No
90	NKX2-2	4150731	7544	0.066	0.3432	No
91	ADAMTS17	6510739	7746	0.061	0.3325	No
92	GPS1	2470037 4760315 6200528 7100040	7795	0.060	0.3302	No
93	CTBP2	430309 3710079	7921	0.056	0.3237	No
94	NEUROD2	5290097	8301	0.047	0.3033	No
95	POGK	5290315	8408	0.045	0.2978	No
96	NRXN1	460408 5340270 6370066	8423	0.044	0.2972	No
97	JPH1	610739	8473	0.043	0.2948	No
98	PCDHA10	3830725	8519	0.042	0.2925	No
99	COL2A1	460446 3940500	8808	0.036	0.2771	No
100	ANGPT2	1230458 5720706 6040605	8923	0.033	0.2710	No
101	CHST11	6760546	8998	0.032	0.2672	No
102	SC5DL	6650390	9085	0.031	0.2626	No
103	CUGBP1	450292 510022 7050176 7050215	9108	0.030	0.2616	No
104	SLC12A5	1980692	9505	0.024	0.2402	No
105	ADAM10	3780156	9517	0.023	0.2397	No
106	HPCA	6860010	9522	0.023	0.2396	No
107	MTHFD1	5900398 6520427	9708	0.020	0.2297	No
108	FLT3	2640487	9848	0.018	0.2222	No
109	HOXB7	4540706 4610358	9973	0.016	0.2156	No
110	KIAA0427	1690435	10029	0.015	0.2127	No
111	ABCA1	6290156	10073	0.014	0.2104	No
112	CHRM1	4280619	10310	0.010	0.1976	No
113	PRKCE	5700053	10501	0.007	0.1874	No
114	RCL1	1980408 2680008 3800176	10519	0.007	0.1865	No
115	FGF11	840292	10593	0.006	0.1825	No
116	SEPT3	3830022 5290079	10724	0.003	0.1755	No
117	NEUROD6	4670731	10794	0.002	0.1718	No
118	ALX4	3870019	10815	0.002	0.1707	No
119	LIN28	6590672	10871	0.001	0.1677	No
120	B3GALT2	430136	11264	-0.006	0.1465	No
121	SGTB	460170	11308	-0.006	0.1442	No
122	EIF3S1	6130368 6770044	11332	-0.007	0.1430	No
123	HOXC13	4070722	11553	-0.011	0.1311	No
124	SLC17A2	870593 2810035	11608	-0.012	0.1282	No
125	NPM1	4730427	12091	-0.022	0.1022	No
126	NUP153	7000452	12122	-0.023	0.1006	No
127	EN2	7000368	12197	-0.025	0.0967	No
128	LHX9	2350112	12245	-0.026	0.0943	No
129	PLA2G4A	6380364	12255	-0.026	0.0939	No
130	POU3F1	3710022	12376	-0.029	0.0876	No
131	HHIP	6940438	12397	-0.030	0.0866	No
132	APOA5	6130471	12497	-0.032	0.0814	No
133	SCFD2	2480504	12701	-0.037	0.0706	No
134	STMN4	2900091	12790	-0.040	0.0660	No
135	NDUFS1	2650253	12928	-0.045	0.0587	No
136	ENPP6	110524 580563	13110	-0.052	0.0492	No
137	MCM8	6130743	13120	-0.052	0.0489	No
138	SNCAIP	4010551	13549	-0.074	0.0260	No
139	RBBP6	2320129	13725	-0.086	0.0169	No
140	PPARGC1B	3290114	13778	-0.090	0.0145	No
141	PLAG1	1450142 3870139 6520039	13817	-0.093	0.0129	No
142	XRN2	130603 1230113 4230309	14174	-0.125	-0.0059	No
143	ADCY3	2350347 3440242	14451	-0.169	-0.0201	No
144	SEMA3F	5420601 6770731	14497	-0.178	-0.0217	No
145	CDC14A	4050132	14577	-0.195	-0.0251	No
146	WEE1	3390070	14754	-0.240	-0.0335	No
147	TOP1	770471 4060632 6650324	14995	-0.312	-0.0451	No
148	ZZZ3	780133 2320239 2640452 5080706 6550341	15034	-0.321	-0.0457	No
149	HRH3	6180040	15133	-0.356	-0.0494	No
150	RAMP2	6860037	15281	-0.415	-0.0555	No
151	SEMA7A	2630239 5050593	15335	-0.437	-0.0564	No
152	PANK3	3060687	15411	-0.482	-0.0583	No
153	U2AF2	450600 4670128 5420292	15479	-0.519	-0.0596	No
154	ZCCHC7	6510592	15594	-0.579	-0.0631	No
155	GADD45B	2350408	15961	-0.782	-0.0794	No
156	RBM3	2360739 5700167	16109	-0.905	-0.0833	No
157	TEF	1050050 3120397 4060487	16133	-0.917	-0.0803	No
158	CLCN2	1940021	16136	-0.919	-0.0763	No
159	HRSP12	610136 2510133 4280561 2760047	16142	-0.923	-0.0724	No
160	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	16152	-0.932	-0.0686	No
161	PFN1	6130132	16156	-0.934	-0.0645	No
162	EIF4G1	4070446	16163	-0.938	-0.0606	No
163	HBP1	2510102 3130010 4210619	16288	-1.001	-0.0628	No
164	USP2	1190292 1240253 4850035	16298	-1.004	-0.0587	No
165	ZHX2	2900452	16477	-1.164	-0.0630	No
166	MXD4	4810113	16871	-1.587	-0.0771	No
167	MAX	5220021	16906	-1.643	-0.0715	No
168	PDK2	2690017	16927	-1.663	-0.0650	No
169	RXRB	1780040 5340438	16993	-1.723	-0.0607	No
170	HTF9C	3190048 4120132	17432	-2.321	-0.0739	No
171	PFKFB3	630706	17720	-2.857	-0.0765	No
172	GNA13	4590102	17741	-2.915	-0.0643	No
173	SLC20A1	6420014	17874	-3.207	-0.0569	No
174	AP1GBP1	2510372	17938	-3.349	-0.0451	No
175	GJA1	5220731	17978	-3.476	-0.0314	No
176	RPIA	780079	18281	-4.639	-0.0267	No
177	STAT3	460040 3710341	18295	-4.709	-0.0060	No
178	WBP2	3170128	18364	-5.139	0.0137	No