Details for gene set PASSERINI

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	PASSERINI_TRANSCRIPTION
Enrichment Score (ES)	-0.63525265
Normalized Enrichment Score (NES)	-1.6100924
Nominal p-value	0.0025062656
FDR q-value	0.31871137
FWER p-Value	0.951

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TP53	6130707	231	5.694	0.0549	No
2	AIP	5720300	1505	2.274	0.0132	No
3	TRIM29	4560369 5900121	1649	2.075	0.0300	No
4	NFKB1	5420358	1663	2.059	0.0537	No
5	TWIST1	5130619	2416	1.293	0.0284	No
6	ETS1	5270278 6450717 6620465	3049	0.850	0.0044	No
7	TBX6	4730139 6840647	3469	0.614	-0.0109	No
8	HOXC10	5360170	4671	0.286	-0.0722	No
9	NR2F2	3170609 3310577	5041	0.234	-0.0894	No
10	FEV	840369 5860139	5475	0.183	-0.1105	No
11	RRN3	5550138	5950	0.140	-0.1344	No
12	SOX8	580026	5999	0.136	-0.1354	No
13	KLF4	1850022 3830239 5570750	6095	0.130	-0.1390	No
14	ETV1	70735 2940603 5080463	6155	0.127	-0.1407	No
15	MYOG	3190672	6531	0.107	-0.1596	No
16	EN1	5360168 7050025	7300	0.074	-0.2001	No
17	FOS	1850315	7375	0.071	-0.2033	No
18	DLX4	50215 6650059	8033	0.054	-0.2380	No
19	HOXB5	2900538	8565	0.041	-0.2662	No
20	HR	2690095 6200300	8753	0.037	-0.2758	No
21	SPDEF	360070	8915	0.034	-0.2841	No
22	HOXD10	6100039	9393	0.025	-0.3095	No
23	MEF2C	670025 780338	10374	0.009	-0.3622	No
24	PITX2	870537 2690139	10665	0.004	-0.3778	No
25	TAF4	1450170	10913	0.000	-0.3911	No
26	THRB	1780673	11013	-0.001	-0.3964	No
27	HAND2	4670142	11629	-0.013	-0.4294	No
28	ENPP2	5860546	12049	-0.021	-0.4517	No
29	MITF	380056	13239	-0.057	-0.5151	No
30	MEIS1	1400575	13439	-0.067	-0.5250	No
31	TEAD3	2320142	13854	-0.095	-0.5462	No
32	JUN	840170	13860	-0.095	-0.5453	No
33	ARNT	1170672 5670711	14001	-0.109	-0.5516	No
34	KLF9	3840022	14189	-0.127	-0.5602	No
35	GATA6	1770010	14763	-0.243	-0.5882	No
36	NR2C2	6100097	14772	-0.245	-0.5857	No
37	BRD8	1170463 2900075 4050397 6590332	15081	-0.338	-0.5983	No
38	ATF4	730441 1740195	15175	-0.374	-0.5989	No
39	ERCC3	6900008	15597	-0.581	-0.6147	No
40	DMTF1	5910047 1570497 2480100 6620239	15629	-0.594	-0.6094	No
41	NFKB2	2320670	15676	-0.622	-0.6045	No
42	KLF5	3840348	16062	-0.866	-0.6150	No
43	SNAPC1	6860324	16439	-1.124	-0.6220	Yes
44	TCF12	3610324 7000156	16445	-1.131	-0.6089	Yes
45	RARA	4050161	16763	-1.457	-0.6087	Yes
46	SMAD3	6450671	16901	-1.640	-0.5967	Yes
47	RXRB	1780040 5340438	16993	-1.723	-0.5812	Yes
48	CTCF	5340017	17438	-2.325	-0.5777	Yes
49	E4F1	6110717	17615	-2.643	-0.5559	Yes
50	FUBP1	5390373	17686	-2.786	-0.5267	Yes
51	NFKBIA	1570152	17856	-3.162	-0.4984	Yes
52	STAT1	6510204 6590553	17965	-3.444	-0.4635	Yes
53	NFYA	5860368	17973	-3.463	-0.4230	Yes
54	FOXO1A	3120670	18205	-4.228	-0.3854	Yes
55	STAT3	460040 3710341	18295	-4.709	-0.3345	Yes
56	GTF3C1	1990368 4210037	18339	-4.951	-0.2783	Yes
57	NFE2L1	6130053	18410	-5.490	-0.2171	Yes
58	PBX2	3130433 6510292	18493	-6.204	-0.1482	Yes
59	ISGF3G	3190131 7100142	18497	-6.228	-0.0747	Yes
60	XBP1	3840594	18538	-6.856	0.0042	Yes