Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.54631925
Normalized Enrichment Score (NES)	-1.5086423
Nominal p-value	0.0029239766
FDR q-value	0.39733523
FWER p-Value	0.997

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CEBPB	2970019	19	9.933	0.0514	No
2	UNC119	360372	82	7.253	0.0864	No
3	STAT5A	2680458	160	6.254	0.1152	No
4	DTX1	5900372	296	5.224	0.1355	No
5	PIK3R2	1660193	606	3.975	0.1398	No
6	DBNL	7100088	709	3.701	0.1538	No
7	JAK3	70347 3290008	822	3.400	0.1657	No
8	ZAP70	1410494 2260504	1024	2.988	0.1706	No
9	NCL	2360463 4540279	1519	2.258	0.1559	No
10	HOMER3	3830279	1628	2.104	0.1611	No
11	PTK2	1780148	1842	1.887	0.1596	No
12	GRB2	6650398	1856	1.865	0.1687	No
13	YWHAQ	6760524	2230	1.476	0.1564	No
14	PTPN6	4230128	3027	0.864	0.1179	No
15	MAP4K1	4060692	3281	0.709	0.1080	No
16	ABL1	1050593 2030050 4010114	3714	0.520	0.0874	No
17	CDC42	1240168 3440278 4480519 5290162	3752	0.508	0.0881	No
18	SHB	4920494	3849	0.476	0.0854	No
19	GRAP2	7100441 1410647	3859	0.474	0.0875	No
20	PAG1	5910397	3950	0.448	0.0850	No
21	DLG1	2630091 6020286	4123	0.399	0.0778	No
22	PTPRC	130402 5290148	4545	0.309	0.0567	No
23	ENAH	1690292 5700300	4829	0.261	0.0428	No
24	STK39	50692	5057	0.232	0.0317	No
25	DUSP3	1240129 6840215	5358	0.197	0.0166	No
26	SH3BP2	610131	5676	0.166	0.0003	No
27	CD2AP	1940369	6490	0.109	-0.0430	No
28	TUBB2A	6940435	6651	0.100	-0.0512	No
29	TXK	2320338	7020	0.085	-0.0706	No
30	VASP	7050500	7044	0.083	-0.0714	No
31	PTPRH	3870070	7145	0.080	-0.0764	No
32	SH2D3C	3060014	7196	0.077	-0.0787	No
33	PIK3R1	4730671	7309	0.074	-0.0843	No
34	FOS	1850315	7375	0.071	-0.0875	No
35	SOS1	7050338	7718	0.062	-0.1056	No
36	ARHGEF6	4780164 6380450	7844	0.058	-0.1121	No
37	CBLB	3520465 4670348	7847	0.058	-0.1119	No
38	PTPRJ	4010707	7875	0.057	-0.1130	No
39	LYN	6040600	7944	0.056	-0.1164	No
40	PTPN22	1690647 7100239	8491	0.043	-0.1457	No
41	PTPN11	2230100 2470180 6100528	8521	0.042	-0.1470	No
42	NCK1	6200575 6510050	8925	0.033	-0.1686	No
43	SKAP2	6760500	9165	0.029	-0.1814	No
44	AKT1	5290746	9328	0.027	-0.1900	No
45	PLCG1	6020369	9889	0.017	-0.2201	No
46	PTPN3	870369	10125	0.013	-0.2327	No
47	GAB2	1410280 2340520 4280040	10136	0.013	-0.2332	No
48	NFATC2	70450 540097	10515	0.007	-0.2536	No
49	INSL3	4150092	10652	0.005	-0.2609	No
50	RAP1A	1090025	11113	-0.003	-0.2858	No
51	PRKCQ	2260170 3870193	11611	-0.012	-0.3125	No
52	ACP1	1990435	12183	-0.024	-0.3433	No
53	RAPGEF1	60040 4590670	12555	-0.033	-0.3631	No
54	ARHGEF7	1690441	13151	-0.053	-0.3950	No
55	SRC	580132	13241	-0.057	-0.3995	No
56	GRAP	1770195	13272	-0.059	-0.4008	No
57	SYK	6940133	13698	-0.084	-0.4233	No
58	JUN	840170	13860	-0.095	-0.4315	No
59	STAT5B	6200026	13964	-0.105	-0.4365	No
60	CREB1	1500717 2230358 3610600 6550601	14820	-0.260	-0.4813	No
61	ARHGDIB	4730433	14873	-0.277	-0.4827	No
62	PTPN12	2030309 6020725 6130746 6290609	14946	-0.297	-0.4850	No
63	SHC1	2900731 3170504 6520537	15383	-0.470	-0.5061	No
64	MAP2K1	840739	15572	-0.564	-0.5132	No
65	VAV3	1050731 2450242 2680653	15709	-0.646	-0.5172	No
66	MAPK1	3190193 6200253	15779	-0.675	-0.5173	No
67	FYN	2100468 4760520 4850687	15896	-0.745	-0.5197	No
68	SOS2	2060722	16061	-0.863	-0.5240	No
69	FYB	1690440	16076	-0.876	-0.5201	No
70	LCP2	2680066 6650707	16263	-0.994	-0.5249	No
71	RIPK2	5050072 6290632	16369	-1.063	-0.5250	No
72	CRK	1230162 4780128	16481	-1.169	-0.5248	No
73	LAT	3170025	16561	-1.244	-0.5225	No
74	LCK	3360142	17003	-1.730	-0.5372	Yes
75	WIPF1	1170577	17020	-1.746	-0.5288	Yes
76	ABI1	2850152	17170	-1.923	-0.5267	Yes
77	CREBBP	5690035 7040050	17180	-1.936	-0.5170	Yes
78	CD3D	2810739	17311	-2.126	-0.5128	Yes
79	GIT2	6040039 6770181	17362	-2.201	-0.5039	Yes
80	EVL	1740113	17376	-2.229	-0.4928	Yes
81	KHDRBS1	1240403 6040040	17415	-2.292	-0.4828	Yes
82	WAS	5270193	17462	-2.355	-0.4728	Yes
83	TUBA4A	6900279	17527	-2.473	-0.4632	Yes
84	DOCK2	2940040	17729	-2.879	-0.4589	Yes
85	SLA	2000070	17755	-2.940	-0.4447	Yes
86	WASF2	4850592	17800	-3.026	-0.4311	Yes
87	CARD11	70338	17860	-3.175	-0.4175	Yes
88	SH2D2A	2970594	17865	-3.186	-0.4009	Yes
89	PSTPIP1	3190156	17915	-3.297	-0.3862	Yes
90	DNM2	50176 3170279	17981	-3.481	-0.3713	Yes
91	RASA1	1240315	18023	-3.576	-0.3546	Yes
92	CBL	6380068	18068	-3.711	-0.3374	Yes
93	VAV1	6020487	18073	-3.720	-0.3180	Yes
94	BCL10	2360397	18081	-3.744	-0.2986	Yes
95	NEDD9	1740373 4230053	18235	-4.404	-0.2836	Yes
96	DEF6	840593	18296	-4.710	-0.2620	Yes
97	CD3E	3800056	18329	-4.901	-0.2379	Yes
98	PTK2B	4730411	18348	-5.010	-0.2124	Yes
99	CRKL	4050427	18419	-5.557	-0.1868	Yes
100	CISH	840315	18446	-5.822	-0.1575	Yes
101	CD4	1090010	18448	-5.828	-0.1268	Yes
102	CD5	6590338	18454	-5.879	-0.0960	Yes
103	CD247	3800725 5720136	18455	-5.882	-0.0650	Yes
104	CD3G	2680288	18503	-6.298	-0.0343	Yes
105	ITK	2230592	18571	-7.638	0.0024	Yes