DatasetSet_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#truncNotch_versus_absentNotch
Phenotypephenotype_absentNotch_versus_truncNotch.cls#truncNotch_versus_absentNotch
Upregulated in classabsentNotch
GeneSetCAGTATT,MIR-200B,MIR-200C,MIR-429
Enrichment Score (ES)-0.5393013
Normalized Enrichment Score (NES)-1.7246639
Nominal p-value0.0
FDR q-value0.0061616153
FWER p-Value0.069
Table: GSEA Results Summary



Fig 1: Enrichment plot: CAGTATT,MIR-200B,MIR-200C,MIR-429   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IGSF364505242633.308-0.0018No
2SMARCD13060193 3850184 64003693972.9340.0020No
3ETV51100175822.6030.0018No
4PPP1R9B31306195992.5580.0107No
5HRB1660397 61103986382.5070.0181No
6PPM1F770687 12405926702.4640.0258No
7BAT319905946812.4360.0345No
8IHPK113400537242.3650.0411No
9MXD362200148792.1660.0409No
10FEZ2591018111181.9020.0351No
11EIF2B5430315 690040012751.7570.0333No
12COPS8281054113351.7110.0365No
13RNF5276008814681.5930.0353No
14LCP1428039714831.5830.0406No
15UBQLN1110280 730376 2470133 659059416681.4690.0361No
16RDH10665007016701.4670.0416No
17ARID2110647 539043516711.4670.0472No
18SBF1638070716901.4600.0517No
19FGD1478002118661.3020.0471No
20SFRS250707 38059319551.2370.0470No
21SLC16A2666073920001.2060.0491No
22GPR146383033321121.1360.0474No
23ARHGDIA590023921631.0950.0488No
24LYPLA2150011221711.0890.0525No
25TARDBP870390 235009322111.0700.0545No
26SCD268044122491.0460.0564No
27RHOA580142 5900131 534045023371.0020.0555No
28PLK2645015223640.9910.0578No
29PCTK1456007924110.9640.0589No
30SRF70139 232003926900.8040.0468No
31GABPA2360017 4780301 485027928310.7300.0419No
32FBXW74210338 705028028740.7030.0423No
33TUBB3407028030880.6140.0329No
34EGR3694012831760.5820.0304No
35GIT26040039 677018132180.5680.0303No
36DLC11090632 645059433660.5160.0242No
37NIN3450576 508004833870.5100.0250No
38PAPOLA4200286 485011234830.4740.0216No
39HDHD22850411 694016835320.4620.0208No
40SEMA3F5420601 677073135720.4520.0204No
41HIC2401043337010.4180.0149No
42CDYL4200142 4730397 606040037240.4110.0153No
43ANLN1780113 2470537 684004737770.3990.0140No
44SLC14A11580458 2230707 570015437790.3990.0154No
45PPAP2B3190397 473028040780.3390.0004No
46HECTD22680014 306068942020.318-0.0051No
47PTBP1407073642150.315-0.0046No
48PHF63120632 399004142270.313-0.0040No
49PTHLH529073942410.311-0.0035No
50PHACTR33850435 590044543360.294-0.0076No
51ETS15270278 6450717 662046544100.282-0.0105No
52GOSR21850059 1980687 459018444250.279-0.0102No
53NDN567007545550.260-0.0163No
54SDC2198016845890.255-0.0171No
55KCND21170128 210011246320.250-0.0185No
56CNTFR4480092 620006446390.249-0.0178No
57TSC22D11340739 604018146730.244-0.0187No
58PPP2R5C3310121 665067247240.238-0.0205No
59PTPN13206068147880.231-0.0231No
60GLI3569014849970.207-0.0337No
61CSMD31660427 194068750100.206-0.0336No
62CREB5232036851200.191-0.0388No
63CORO1C457039751740.186-0.0410No
64NPC1459002052810.176-0.0462No
65RKHD3618047153190.173-0.0475No
66ELF21690014 2480132 3060180 319050453200.173-0.0469No
67MATR31940170 534027853690.169-0.0488No
68SCN3B840112 1780152 5910685 610013154070.166-0.0502No
69ELAVL236018155020.159-0.0548No
70DNMT3A4050068 481071755040.159-0.0542No
71VLDLR870722 3060047 5340452 655013155430.156-0.0557No
72DGKA5720152 589032856400.149-0.0604No
73CACNA1C1660128 3780300 3870092 6290403 690030156760.146-0.0618No
74SOX2630487 223049157530.141-0.0654No
75MMD2492010057580.140-0.0651No
76MGAT2476054658580.134-0.0700No
77DDEF11170411 407046559180.129-0.0727No
78PIN1297040860110.123-0.0773No
79NDST11500427 534012160910.119-0.0812No
80ATRX2340039 3610132 421037361090.118-0.0816No
81ATXN1555015662680.109-0.0899No
82ACE2336044663920.102-0.0962No
83PHF21A61001464630.099-0.0997No
84HS3ST1185019365390.096-0.1034No
85LRP1B145019365720.094-0.1048No
86TUBB2A694043566060.093-0.1063No
87ADCY2461010066330.092-0.1073No
88NAP1L536057666700.090-0.1090No
89PPP4R2589003567630.086-0.1137No
90FBXW2428001768220.084-0.1165No
91MTUS1780348 492060968800.082-0.1193No
92RGL11500097 690045069580.079-0.1232No
93NXPH1387054669790.078-0.1240No
94BASP1570004470050.077-0.1251No
95NRP24070400 5860041 665044670110.077-0.1251No
96LIN7B1850546 3850288 676011070560.076-0.1272No
97SLC38A41340059 539051971710.073-0.1332No
98GPM6A1660044 275015272240.071-0.1358No
99ARHGEF17206000874200.064-0.1462No
100MPP52100148 522063274990.062-0.1502No
101DNAJB5290021575200.061-0.1511No
102LRRTM3421002175810.060-0.1541No
103PAK7383016476360.058-0.1569No
104PKIA407044176560.058-0.1577No
105SOX163002676950.057-0.1595No
106LEPR1340398 319032477180.056-0.1605No
107AKAP2555034777210.056-0.1604No
108SLC1A2223052077460.056-0.1615No
109CDH111230133 2100180 461011077720.055-0.1627No
110CASR61050477810.055-0.1629No
111CNTN41780300 5570577 637001977860.055-0.1629No
112PLCL1237016778690.053-0.1672No
113SEMA6D4050324 5860138 635030779340.052-0.1705No
114AMOTL2473008279610.051-0.1718No
115NEGR11940731 513017079900.050-0.1731No
116AFF3387010280920.048-0.1784No
117ACVR2A611064783770.042-0.1938No
118USP25352003584450.041-0.1973No
119BHLHB3345043885050.039-0.2004No
120TRIM2430546 117028685140.039-0.2007No
121FMR1505007585940.037-0.2049No
122TIAL14150048 651060586630.036-0.2085No
123KCNK21230592 700049786670.036-0.2085No
124WDFY33610041 4560333 457027387470.034-0.2127No
125ACY1L2314014288520.032-0.2183No
126HLF237011388730.031-0.2192No
127TAF4145017089000.031-0.2205No
128CLIC41230025 3190180 3290368 645018189070.031-0.2207No
129PRDM13170347 352030189500.030-0.2229No
130NFIA2760129 586027889600.030-0.2233No
131LHFP344036890870.027-0.2301No
132MFAP5492013991680.025-0.2344No
133TNFRSF11B461044692440.024-0.2384No
134HMGB3294016893560.022-0.2444No
135EIF5B1190102 420044094000.021-0.2467No
136DACH12450593 570059294550.020-0.2495No
137SYT184036496420.017-0.2597No
138TRAM1L15012897300.016-0.2644No
139MYT1677052497540.015-0.2656No
140PARD6B412060097680.015-0.2662No
141FBXW11645063297780.015-0.2666No
142GNAI3467073998130.014-0.2685No
143EPS8705020498370.014-0.2697No
144TCF2870338 505063299560.012-0.2761No
145CBX470332100540.010-0.2813No
146PCDH82360047 4200452100560.010-0.2814No
147GLRA27000019101300.009-0.2853No
148PLS33290082101320.009-0.2853No
149NR5A21690180 6900050101420.009-0.2858No
150B3GNT12350446102640.007-0.2924No
151ZFPM2460072102700.007-0.2926No
152CAB395720471103730.005-0.2982No
153CCNJ870047104150.004-0.3004No
154NUP1537000452104300.004-0.3012No
155NAB1430739 1230114 3390736 6660056105010.003-0.3050No
156KCTD86660593105410.002-0.3071No
157ST6GALNAC52940400105930.001-0.3099No
158KLF10485005610681-0.000-0.3147No
159PCTK2570067310825-0.002-0.3225No
160SEC23A586003510893-0.004-0.3261No
161PUM24200441 591044610923-0.004-0.3277No
162PLEKHC1265006610996-0.005-0.3316No
163EFNA1384067211083-0.007-0.3363No
164CFL2380239 620036811203-0.009-0.3428No
165PALM24120068 710039811266-0.010-0.3461No
166CRH371030111435-0.013-0.3553No
167KLF121660095 4810288 5340546 652028611457-0.014-0.3564No
168CNOT72450338 572039711533-0.015-0.3604No
169KCNQ43800438 705040011543-0.015-0.3609No
170UBE2B478049711559-0.016-0.3616No
171TEAD1247055111592-0.016-0.3633No
172CLASP2251013911667-0.018-0.3673No
173GEM529008211728-0.019-0.3705No
174EFNB2534013611747-0.019-0.3714No
175PKD1604067111778-0.020-0.3730No
176EIF2S1536029211850-0.021-0.3768No
177AP1S2780279 428070711872-0.022-0.3779No
178IER5235057511920-0.023-0.3803No
179PAM529052811933-0.023-0.3809No
180GATA2659028011962-0.024-0.3824No
181SCHIP1456015212061-0.026-0.3876No
182DDX3Y1580278 420051912371-0.033-0.4044No
183UBE2D1185040012406-0.034-0.4061No
184NPM1473042712434-0.034-0.4075No
185RND394050412509-0.036-0.4114No
186EDG2629021512557-0.038-0.4138No
187MYB1660494 5860451 613070612609-0.039-0.4165No
188UBE2I2680056 635044612636-0.040-0.4177No
189HNRPH22630040 572067112721-0.042-0.4222No
190DNAJB62810309 557045112849-0.046-0.4289No
191NPTX1371073612876-0.047-0.4302No
192YPEL2556060912902-0.048-0.4314No
193GDI2237006812910-0.048-0.4316No
194PCDH7450398 415004012944-0.049-0.4332No
195ESRRG401018112968-0.050-0.4343No
196OCLN257067112976-0.050-0.4345No
197FHL16027813001-0.051-0.4356No
198GOLGA7698012113098-0.054-0.4406No
199NGEF319053813121-0.055-0.4416No
200RAB21557007013141-0.056-0.4424No
201DMRT2263006813157-0.056-0.4431No
202SULF143057513290-0.062-0.4500No
203QKI5220093 613004413451-0.068-0.4585No
204KCNJ263001913603-0.076-0.4665No
205SNAP2536052013606-0.076-0.4663No
206SLC6A194016813697-0.082-0.4709No
207NIPA138060013792-0.088-0.4758No
208TMEFF24480161 620020413797-0.088-0.4756No
209RPS6KB11450427 5080110 620056313959-0.099-0.4841No
210ZIC338002013960-0.100-0.4837No
211FHOD1268027914061-0.108-0.4888No
212HNRPD412002114130-0.114-0.4920No
213DACT1150005014281-0.131-0.4998No
214THRAP1247012114284-0.131-0.4994No
215SSH236005614301-0.133-0.4997No
216PIP5K3536011214309-0.134-0.4996No
217AKAP7461004414331-0.137-0.5002No
218LRP1627038614339-0.137-0.5001No
219DUSP1686012114399-0.144-0.5028No
220BAP1383013114491-0.157-0.5072No
221NOG232060914540-0.164-0.5092No
222NBR12810451 640006614599-0.174-0.5117No
223ARID4B730754 666002614733-0.201-0.5182No
224TUBB730670 339003714899-0.235-0.5263No
225RKHD250035 393030014919-0.241-0.5265No
226FGFR24670601 5570402 694037715016-0.265-0.5307No
227RECK84007915067-0.280-0.5324No
228NCOA2940347 285072515084-0.285-0.5322No
229LASS65890576 652013815109-0.294-0.5324No
230SLC38A21470242 380002615153-0.306-0.5336No
231KLF41850022 3830239 557075015239-0.335-0.5369No
232THAP14280025 572030915283-0.348-0.5380Yes
233BRWD13130048 3140168 640060115291-0.349-0.5370Yes
234E2F350162 46018015296-0.350-0.5359Yes
235NRIP1319003915347-0.369-0.5373Yes
236DCUN1D1236033215362-0.375-0.5366Yes
237STX1A306027315373-0.378-0.5357Yes
238CITED25670114 513008815380-0.379-0.5346Yes
239KCTD15281073515425-0.395-0.5355Yes
240BIRC41400129 696012815457-0.404-0.5357Yes
241FOXK12640373 329013615469-0.408-0.5347Yes
242SYVN1694059415471-0.408-0.5332Yes
243AEBP2297060315482-0.413-0.5322Yes
244CHD9430037 2570129 542039815499-0.419-0.5315Yes
245PPP1R10110136 3170725 361048415533-0.430-0.5317Yes
246DAG1460053 61034115592-0.453-0.5331Yes
247GATA41410215 269060915615-0.463-0.5326Yes
248FN11170601 2970647 6220288 694003715650-0.474-0.5326Yes
249ZC3H613071115662-0.478-0.5314Yes
250RPS6KA22970161 473027815663-0.478-0.5296Yes
251MAP4K3539055115701-0.493-0.5298Yes
252NTF3589013115719-0.500-0.5288Yes
253YTHDF34540632 4670717 704060915750-0.515-0.5285Yes
254PRKAR2B3130593 522057715901-0.577-0.5345Yes
255PPM1B380180 450154 361021515964-0.611-0.5356Yes
256PCNP61076815965-0.611-0.5333Yes
257SMURF2194016115992-0.622-0.5323Yes
258OXR12370039 319070616022-0.637-0.5315Yes
259ASF1A705002016060-0.651-0.5310Yes
260TRIM33580619 2230280 3990433 620074716084-0.659-0.5298Yes
261PARP63290332 4760167 690018116103-0.668-0.5283Yes
262ANK31500161 2900435 4210154 640010016147-0.695-0.5280Yes
263PDCD10476050016165-0.708-0.5262Yes
264PCAF2230161 2570369 655045116166-0.708-0.5235Yes
265AMFR281004116168-0.709-0.5209Yes
266CNOT42320242 676070616176-0.713-0.5186Yes
267HNRPK1190348 2060411 2570092 684055116189-0.717-0.5165Yes
268CALU2680403 3520056 4610348 5720176 613012116292-0.779-0.5191Yes
269HIPK111019316303-0.786-0.5167Yes
270NR3C163056316337-0.804-0.5154Yes
271CLASP1686027916434-0.859-0.5174Yes
272RPS6KA3198070716486-0.889-0.5169Yes
273LAMC1473002516521-0.908-0.5153Yes
274MAP4K4236005916556-0.933-0.5136Yes
275ULK250041 505017616592-0.953-0.5119Yes
276ACACA2490612 268036916594-0.954-0.5083Yes
277PSIP11780082 3190435 505059416655-0.985-0.5079Yes
278LRP4174025316671-0.993-0.5049Yes
279LFNG536071116728-1.019-0.5041Yes
280EVI5638004016807-1.070-0.5043Yes
281ORMDL3134071116874-1.124-0.5037Yes
282TBP1450601 281019316892-1.138-0.5003Yes
283OLIG3105060316897-1.140-0.4962Yes
284CYP1B1476073516923-1.156-0.4932Yes
285RABIF2370458 591054317000-1.226-0.4927Yes
286YWHAG378034117025-1.251-0.4892Yes
287HNRPU652073617029-1.253-0.4846Yes
288OGT2360131 461033317074-1.298-0.4821Yes
289CDR2620037717137-1.366-0.4803Yes
290EGLN12480180 3120253 611019517177-1.403-0.4771Yes
291FLI1399014217193-1.419-0.4726Yes
292FREQ3140039 4060600 456067017211-1.438-0.4681Yes
293HS2ST1317008817266-1.497-0.4653Yes
294KLF9384002217293-1.526-0.4610Yes
295CSNK1G311045017294-1.527-0.4552Yes
296RAC1481068717312-1.548-0.4502Yes
297RTF1210073517419-1.669-0.4497Yes
298FBXO33151050417453-1.704-0.4450Yes
299APRIN281005017454-1.712-0.4385Yes
300SLC23A2666072217533-1.795-0.4360Yes
301MAFG412044017545-1.812-0.4297Yes
302TSGA14666046517596-1.867-0.4254Yes
303ATP2A21090075 399027917677-1.987-0.4222Yes
304BCAP29235050017739-2.079-0.4176Yes
305SMARCAD1539061917742-2.084-0.4098Yes
306TOB1415013817744-2.086-0.4020Yes
307PHTF2659005317751-2.090-0.3944Yes
308NFYA586036817785-2.132-0.3881Yes
309PDPK1665016817801-2.154-0.3807Yes
310KHDRBS11240403 604004017875-2.247-0.3762Yes
311MMD385023917878-2.255-0.3678Yes
312RAB6IP1415004417915-2.320-0.3609Yes
313CNN3611002017930-2.342-0.3528Yes
314RANBP10234018418029-2.502-0.3487Yes
315ICK1580746 314002118048-2.543-0.3400Yes
316ADIPOR2151003518055-2.558-0.3306Yes
317SESN1212002118076-2.615-0.3218Yes
318DDX3X219002018122-2.725-0.3139Yes
319MSN406004418146-2.769-0.3047Yes
320MARCKS704045018164-2.808-0.2949Yes
321SLC6A6610030018173-2.830-0.2846Yes
322TCEB1117061918175-2.831-0.2740Yes
323CRKL405042718201-2.887-0.2644Yes
324ZFYVE20642040018264-3.055-0.2562Yes
325OSBPL11177004418268-3.068-0.2447Yes
326NEDD1285004418296-3.146-0.2342Yes
327TBK1569033818325-3.258-0.2234Yes
328RAP2C169013218365-3.418-0.2125Yes
329SERINC1665002018369-3.432-0.1997Yes
330NUDT4676068918388-3.497-0.1874Yes
331ARL8B371036818425-3.654-0.1755Yes
332RANBP9467068518429-3.680-0.1617Yes
333KRAS206017018457-3.794-0.1488Yes
334BRMS1L611060918462-3.813-0.1345Yes
335RAP1B371013818463-3.825-0.1200Yes
336PPP2CA399011318501-4.067-0.1066Yes
337BCL11B268067318505-4.094-0.0912Yes
338YWHAB174017618560-4.653-0.0765Yes
339SFRS1236044018577-4.846-0.0590Yes
340RHOT1676069218580-4.864-0.0407Yes
341ITPR1345051918590-5.141-0.0216Yes
342PRKACB421017018607-6.0620.0005Yes
Table: GSEA details [plain text format]



Fig 2: CAGTATT,MIR-200B,MIR-200C,MIR-429   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CAGTATT,MIR-200B,MIR-200C,MIR-429: Random ES distribution   
Gene set null distribution of ES for CAGTATT,MIR-200B,MIR-200C,MIR-429