Details for gene set V$E12

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch_repos
Phenotype	phenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in class	truncNotch
GeneSet	V$E12_Q6
Enrichment Score (ES)	-0.442656
Normalized Enrichment Score (NES)	-1.2802446
Nominal p-value	0.033167496
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RRAGC	5910348	248	3.426	0.0161	No
2	NEDD4L	6380368	295	3.241	0.0415	No
3	OSR1	1500025	433	2.843	0.0586	No
4	LNX2	3130025	957	1.945	0.0470	No
5	GRB2	6650398	982	1.909	0.0621	No
6	RUNX1	3840711	1043	1.837	0.0747	No
7	SLC23A2	6660722	1083	1.795	0.0881	No
8	MFNG	1770242 4280348	1096	1.781	0.1028	No
9	POLR1D	70082 450750 6040458	1287	1.565	0.1059	No
10	EGLN1	2480180 3120253 6110195	1439	1.403	0.1098	No
11	NUP88	2510044 6760180	1457	1.383	0.1208	No
12	CORO2B	2340035 4850390	1552	1.290	0.1269	No
13	WNT6	4570364	1838	1.055	0.1205	No
14	ELMO1	110338 1190451 1580148 1850609 2350706 2370369 2450129 3840113 4150184 4280079 6290066 6380435 6770494 7100180	1975	0.978	0.1215	No
15	KCNN3	6520600 6420138	2186	0.856	0.1175	No
16	PLAGL2	1770148	2270	0.808	0.1200	No
17	GRB7	2100471	2471	0.695	0.1151	No
18	TNFSF13	2650170	2633	0.616	0.1117	No
19	ADAM12	3390132 4070347	2820	0.531	0.1062	No
20	RIN1	510593	2853	0.520	0.1089	No
21	FUT8	1340068 2340056	2982	0.470	0.1060	No
22	CAMK2A	1740333 1940112 4150292	3090	0.428	0.1039	No
23	SORT1	1850242 2320632 3870537	3105	0.424	0.1068	No
24	TNFRSF21	6380100	3281	0.363	0.1005	No
25	SCG2	5670438 130671	3542	0.283	0.0888	No
26	NTRK3	4050687 4070167 4610026 6100484	3704	0.238	0.0821	No
27	PIM2	840136 5720692 7100577	3732	0.231	0.0827	No
28	DSCAM	1780050 2450731 2810438	3921	0.193	0.0741	No
29	HIF3A	2630053 2680102 6450364	3936	0.189	0.0750	No
30	ITGA6	3830129	3984	0.181	0.0740	No
31	KCNK12	4070072	4255	0.140	0.0606	No
32	USP2	1190292 1240253 4850035	4272	0.138	0.0609	No
33	SSH2	360056	4315	0.133	0.0598	No
34	CXCL14	840114 6450324	4426	0.121	0.0548	No
35	PCDH15	7000438	4492	0.114	0.0523	No
36	NFATC4	2470735	4557	0.108	0.0497	No
37	HR	2690095 6200300	4578	0.106	0.0496	No
38	CANX	4760402	4644	0.101	0.0469	No
39	RAPGEF4	6100563	4677	0.098	0.0460	No
40	WDR20	1240373	4719	0.095	0.0446	No
41	FYN	2100468 4760520 4850687	4785	0.091	0.0419	No
42	SIM1	1770332	4889	0.083	0.0370	No
43	SLC24A3	5080707	5018	0.076	0.0307	No
44	RAB26	5910025	5080	0.073	0.0280	No
45	SORCS2	6350520	5204	0.066	0.0219	No
46	UNC13B	130735	5419	0.058	0.0108	No
47	PACSIN3	4540369 4540400 5360037 6940129	5445	0.057	0.0100	No
48	GPR37	2320093	5646	0.050	-0.0004	No
49	KCNB1	3610035	5676	0.049	-0.0016	No
50	HSD11B2	5900053	5786	0.045	-0.0071	No
51	SLC12A5	1980692	6114	0.036	-0.0245	No
52	DLL1	1770377	6175	0.035	-0.0275	No
53	CHRND	840403 2260670	6257	0.033	-0.0316	No
54	TRIM23	580168 6510672	6297	0.032	-0.0334	No
55	WTAP	4010176	6552	0.026	-0.0470	No
56	GATA2	6590280	6654	0.024	-0.0523	No
57	AP1S2	780279 4280707	6744	0.022	-0.0569	No
58	NTRK2	6220463	6873	0.019	-0.0637	No
59	TGFB3	1070041	6952	0.017	-0.0678	No
60	NBL1	2480021	7094	0.015	-0.0753	No
61	CPA4	3610100	7259	0.012	-0.0841	No
62	ASB14	5860427	7398	0.009	-0.0915	No
63	NHLH1	6100452	7522	0.007	-0.0981	No
64	BMP6	2100128	7647	0.005	-0.1048	No
65	SOX17	5270551	7671	0.005	-0.1060	No
66	PPARA	2060026	7862	0.001	-0.1163	No
67	CHRDL1	1580037 6380204	7866	0.001	-0.1164	No
68	LAMA5	2680722	7898	0.001	-0.1181	No
69	COL4A4	1050541	8277	-0.005	-0.1385	No
70	TCF2	870338 5050632	8660	-0.012	-0.1592	No
71	GPM6B	6220458	8670	-0.012	-0.1595	No
72	ANKRD2	6590427	8678	-0.012	-0.1598	No
73	PTPRJ	4010707	9061	-0.019	-0.1804	No
74	KLHL13	6590731	9141	-0.020	-0.1845	No
75	MTSS1	780435 2370114	9197	-0.021	-0.1873	No
76	SFTPC	3290133	9209	-0.021	-0.1877	No
77	DLL3	4010093	9237	-0.022	-0.1890	No
78	FOXI1	3710095 6620195	9244	-0.022	-0.1891	No
79	GRIA1	1340152 3780750 4920440	9247	-0.022	-0.1890	No
80	ARVCF	2190537	9301	-0.023	-0.1917	No
81	TEAD4	1850239 6380519	9404	-0.025	-0.1970	No
82	TREX2	4920707	9493	-0.027	-0.2016	No
83	ANK2	6510546	9507	-0.027	-0.2020	No
84	GFAP	2060092	9930	-0.035	-0.2246	No
85	MYOZ3	1990138	10170	-0.041	-0.2372	No
86	CPZ	70193	10249	-0.042	-0.2411	No
87	NR4A1	6290161	10270	-0.042	-0.2418	No
88	ARHGEF12	3990195	10307	-0.043	-0.2434	No
89	MT3	1450537	10349	-0.044	-0.2453	No
90	RTN4RL2	6450609	10404	-0.045	-0.2478	No
91	EIF2C1	6900551	10611	-0.050	-0.2585	No
92	FGF11	840292	10619	-0.050	-0.2585	No
93	NEGR1	1940731 5130170	10626	-0.050	-0.2584	No
94	MYH14	4010017	10795	-0.055	-0.2670	No
95	ZNF205	6900022	10903	-0.057	-0.2723	No
96	DNAJB5	2900215	11096	-0.061	-0.2822	No
97	SOST	1170195	11186	-0.064	-0.2865	No
98	ODC1	5670168	11202	-0.064	-0.2867	No
99	GDPD2	7000040	11260	-0.066	-0.2893	No
100	NPEPPS	2630731	11303	-0.068	-0.2910	No
101	DOC2A	6020121	11376	-0.070	-0.2943	No
102	CCNL2	6520167	11516	-0.075	-0.3012	No
103	CHST9	4560092	11610	-0.077	-0.3055	No
104	MTUS1	780348 4920609	11736	-0.082	-0.3116	No
105	ALDH1A2	2320301	12024	-0.093	-0.3264	No
106	NEURL	5390538	12080	-0.096	-0.3285	No
107	IRX6	4590025	12081	-0.096	-0.3277	No
108	CFL1	2340735	12117	-0.097	-0.3288	No
109	ROBO3	6550408	12130	-0.098	-0.3286	No
110	CALB1	460070	12350	-0.110	-0.3395	No
111	CDH5	5340487	12353	-0.110	-0.3387	No
112	CALN1	3610722	12354	-0.110	-0.3377	No
113	FSCN2	1230039	12424	-0.113	-0.3405	No
114	POU2F3	2030601	12584	-0.122	-0.3480	No
115	RASSF2	2480079 5720546	12625	-0.124	-0.3491	No
116	COL4A3	5910075	12636	-0.125	-0.3486	No
117	GGN	1410528 4210082 5290170	12880	-0.142	-0.3606	No
118	GPD1	2480095	13040	-0.154	-0.3679	No
119	PRKAG2	2340100	13089	-0.157	-0.3691	No
120	DNMT3A	4050068 4810717	13112	-0.159	-0.3689	No
121	BRUNOL4	4490452 5080451	13175	-0.164	-0.3709	No
122	CYP26A1	380022 2690600	13255	-0.170	-0.3737	No
123	MDGA1	1170139	13340	-0.177	-0.3767	No
124	NOL4	5050446 5360519	13567	-0.201	-0.3873	No
125	ITGB4	1740021 3840482	14098	-0.265	-0.4137	No
126	CDH2	520435 2450451 2760025 6650477	14221	-0.285	-0.4179	No
127	TNNC2	3840079	14241	-0.287	-0.4164	No
128	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	14274	-0.293	-0.4156	No
129	PHACTR3	3850435 5900445	14280	-0.294	-0.4134	No
130	INVS	4200632 6620528	14305	-0.298	-0.4121	No
131	EYA3	1580195 6510632	14363	-0.309	-0.4125	No
132	HMGN2	3140091	14503	-0.332	-0.4172	No
133	LRP5	2100397 3170484	14514	-0.333	-0.4149	No
134	SYT4	5080193	14627	-0.355	-0.4179	No
135	GJB2	5900609 6200487	14828	-0.397	-0.4253	No
136	ACTN3	3140541 6480598	14918	-0.418	-0.4265	No
137	HOXB7	4540706 4610358	14954	-0.426	-0.4248	No
138	SEMA3F	5420601 6770731	15044	-0.452	-0.4257	No
139	IGSF8	1580592	15061	-0.457	-0.4226	No
140	PLCB3	4670402	15112	-0.469	-0.4213	No
141	FGF8	6350504	15142	-0.478	-0.4188	No
142	CAMK1D	1660100 2350309	15369	-0.557	-0.4262	No
143	IGFBP5	2360592	15673	-0.674	-0.4368	Yes
144	TPM3	670600 3170296 5670167 6650471	15740	-0.702	-0.4344	Yes
145	CORO2A	3840605 6620390	15887	-0.785	-0.4355	Yes
146	CENTG3	2470079 4610092 5050170	15963	-0.825	-0.4325	Yes
147	POFUT1	1570458	16068	-0.877	-0.4306	Yes
148	IGF2	6510020	16119	-0.911	-0.4254	Yes
149	LRP10	1580128	16173	-0.944	-0.4202	Yes
150	ARHGAP24	540278 4540025	16237	-0.981	-0.4151	Yes
151	STC2	4920601	16312	-1.019	-0.4104	Yes
152	CNNM2	2650100	16454	-1.096	-0.4086	Yes
153	TNFAIP1	6940593	16540	-1.154	-0.4032	Yes
154	RANGAP1	2320593 6650601	16567	-1.171	-0.3945	Yes
155	CENTB1	2120093	16633	-1.219	-0.3876	Yes
156	SIPA1	5220687	17003	-1.500	-0.3946	Yes
157	CKM	1450524	17033	-1.513	-0.3832	Yes
158	TTC17	2470440	17090	-1.553	-0.3728	Yes
159	CRELD1	2060253	17295	-1.721	-0.3691	Yes
160	SMAD3	6450671	17349	-1.764	-0.3567	Yes
161	GNAS	630441 1850373 4050152	17359	-1.771	-0.3420	Yes
162	HES6	540411 6550504	17666	-2.067	-0.3407	Yes
163	PSTPIP1	3190156	17706	-2.121	-0.3246	Yes
164	SASH1	4070270	17723	-2.147	-0.3069	Yes
165	SELL	1190500	17775	-2.211	-0.2907	Yes
166	PPOX	2640678 3850102	17956	-2.473	-0.2791	Yes
167	PPP1R9B	3130619	18017	-2.558	-0.2603	Yes
168	SLC37A4	6400079	18057	-2.633	-0.2397	Yes
169	DEF6	840593	18062	-2.636	-0.2172	Yes
170	ARID5A	2450133	18127	-2.734	-0.1972	Yes
171	GFRA1	3610152	18180	-2.845	-0.1755	Yes
172	ELOVL1	2450019 4760138 5340685	18348	-3.294	-0.1561	Yes
173	ENO3	5270136	18352	-3.305	-0.1278	Yes
174	PTK2B	4730411	18400	-3.448	-0.1006	Yes
175	AIG1	2450091	18526	-4.174	-0.0715	Yes
176	HEYL	5860528	18543	-4.355	-0.0348	Yes
177	HMGA1	6580408	18552	-4.491	0.0035	Yes