DatasetSet_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls
#absentNotch_versus_truncNotch_repos
Phenotypephenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in classabsentNotch
GeneSetCAGTATT,MIR-200B,MIR-200C,MIR-429
Enrichment Score (ES)0.53930116
Normalized Enrichment Score (NES)1.7364935
Nominal p-value0.0
FDR q-value0.0062702214
FWER p-Value0.053
Table: GSEA Results Summary



Fig 1: Enrichment plot: CAGTATT,MIR-200B,MIR-200C,MIR-429   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PRKACB421017096.0620.0225Yes
2ITPR13450519265.1410.0411Yes
3RHOT16760692364.8640.0591Yes
4SFRS12360440394.8460.0774Yes
5YWHAB1740176564.6530.0942Yes
6BCL11B26806731114.0940.1068Yes
7PPP2CA39901131154.0670.1220Yes
8RAP1B37101381533.8250.1345Yes
9BRMS1L61106091543.8130.1490Yes
10KRAS20601701593.7940.1632Yes
11RANBP946706851873.6800.1757Yes
12ARL8B37103681913.6540.1894Yes
13NUDT467606892283.4970.2007Yes
14SERINC166500202473.4320.2127Yes
15RAP2C16901322513.4180.2255Yes
16TBK156903382913.2580.2358Yes
17NEDD128500443203.1460.2462Yes
18OSBPL1117700443483.0680.2563Yes
19ZFYVE2064204003523.0550.2678Yes
20CRKL40504274152.8870.2753Yes
21TCEB111706194412.8310.2847Yes
22SLC6A661003004432.8300.2954Yes
23MARCKS70404504522.8080.3056Yes
24MSN40600444702.7690.3152Yes
25DDX3X21900204942.7250.3243Yes
26SESN121200215402.6150.3317Yes
27ADIPOR215100355612.5580.3403Yes
28ICK1580746 31400215682.5430.3497Yes
29RANBP1023401845872.5020.3582Yes
30CNN361100206862.3420.3617Yes
31RAB6IP141500447012.3200.3697Yes
32MMD38502397382.2550.3763Yes
33KHDRBS11240403 60400407412.2470.3847Yes
34PDPK166501688152.1540.3889Yes
35NFYA58603688312.1320.3962Yes
36PHTF265900538652.0900.4023Yes
37TOB141501388722.0860.4099Yes
38SMARCAD153906198742.0840.4178Yes
39BCAP2923505008772.0790.4255Yes
40ATP2A21090075 39902799391.9870.4297Yes
41TSGA14666046510201.8670.4324Yes
42MAFG412044010711.8120.4366Yes
43SLC23A2666072210831.7950.4428Yes
44APRIN281005011621.7120.4450Yes
45FBXO33151050411631.7040.4515Yes
46RTF1210073511971.6690.4560Yes
47RAC1481068713041.5480.4561Yes
48CSNK1G311045013221.5270.4610Yes
49KLF9384002213231.5260.4668Yes
50HS2ST1317008813501.4970.4710Yes
51FREQ3140039 4060600 456067014051.4380.4735Yes
52FLI1399014214231.4190.4780Yes
53EGLN12480180 3120253 611019514391.4030.4825Yes
54CDR2620037714791.3660.4855Yes
55OGT2360131 461033315421.2980.4871Yes
56HNRPU652073615871.2530.4894Yes
57YWHAG378034115911.2510.4940Yes
58RABIF2370458 591054316161.2260.4973Yes
59CYP1B1476073516931.1560.4976Yes
60OLIG3105060317191.1400.5005Yes
61TBP1450601 281019317241.1380.5046Yes
62ORMDL3134071117421.1240.5079Yes
63EVI5638004018091.0700.5084Yes
64LFNG536071118881.0190.5080Yes
65LRP4174025319450.9930.5087Yes
66PSIP11780082 3190435 505059419610.9850.5116Yes
67ACACA2490612 268036920220.9540.5119Yes
68ULK250041 505017620240.9530.5155Yes
69MAP4K4236005920600.9330.5171Yes
70LAMC1473002520950.9080.5187Yes
71RPS6KA3198070721300.8890.5202Yes
72CLASP1686027921820.8590.5207Yes
73NR3C163056322790.8040.5185Yes
74HIPK111019323130.7860.5197Yes
75CALU2680403 3520056 4610348 5720176 613012123240.7790.5221Yes
76HNRPK1190348 2060411 2570092 684055124270.7170.5192Yes
77CNOT42320242 676070624400.7130.5213Yes
78AMFR281004124480.7090.5236Yes
79PCAF2230161 2570369 655045124500.7080.5262Yes
80PDCD10476050024510.7080.5289Yes
81ANK31500161 2900435 4210154 640010024690.6950.5306Yes
82PARP63290332 4760167 690018125130.6680.5308Yes
83TRIM33580619 2230280 3990433 620074725320.6590.5323Yes
84ASF1A705002025560.6510.5335Yes
85OXR12370039 319070625940.6370.5339Yes
86SMURF2194016126240.6220.5347Yes
87PCNP61076826510.6110.5356Yes
88PPM1B380180 450154 361021526520.6110.5379Yes
89PRKAR2B3130593 522057727150.5770.5367Yes
90YTHDF34540632 4670717 704060928660.5150.5304Yes
91NTF3589013128970.5000.5307Yes
92MAP4K3539055129150.4930.5316Yes
93RPS6KA22970161 473027829530.4780.5314Yes
94ZC3H613071129540.4780.5332Yes
95FN11170601 2970647 6220288 694003729660.4740.5344Yes
96GATA41410215 269060930010.4630.5343Yes
97DAG1460053 61034130240.4530.5349Yes
98PPP1R10110136 3170725 361048430830.4300.5333Yes
99CHD9430037 2570129 542039831170.4190.5331Yes
100AEBP2297060331340.4130.5338Yes
101SYVN1694059431450.4080.5348Yes
102FOXK12640373 329013631470.4080.5363Yes
103BIRC41400129 696012831590.4040.5372Yes
104KCTD15281073531910.3950.5370Yes
105CITED25670114 513008832360.3790.5361Yes
106STX1A306027332430.3780.5372Yes
107DCUN1D1236033232540.3750.5380Yes
108NRIP1319003932690.3690.5387Yes
109E2F350162 46018033200.3500.5373Yes
110BRWD13130048 3140168 640060133250.3490.5384Yes
111THAP14280025 572030933330.3480.5393Yes
112KLF41850022 3830239 557075033770.3350.5382No
113SLC38A21470242 380002634630.3060.5347No
114LASS65890576 652013835070.2940.5335No
115NCOA2940347 285072535320.2850.5333No
116RECK84007935490.2800.5334No
117FGFR24670601 5570402 694037736000.2650.5317No
118RKHD250035 393030036970.2410.5274No
119TUBB730670 339003737170.2350.5272No
120ARID4B730754 666002638830.2010.5190No
121NBR12810451 640006640170.1740.5123No
122NOG232060940760.1640.5098No
123BAP1383013141250.1570.5078No
124DUSP1686012142170.1440.5033No
125LRP1627038642770.1370.5006No
126AKAP7461004442850.1370.5008No
127PIP5K3536011243070.1340.5001No
128SSH236005643150.1330.5002No
129THRAP1247012143320.1310.4999No
130DACT1150005043350.1310.5003No
131HNRPD412002144860.1140.4925No
132FHOD1268027945550.1080.4892No
133ZIC338002046560.1000.4841No
134RPS6KB11450427 5080110 620056346570.0990.4845No
135TMEFF24480161 620020448190.0880.4760No
136NIPA138060048240.0880.4761No
137SLC6A194016849190.0820.4713No
138SNAP2536052050100.0760.4666No
139KCNJ263001950130.0760.4668No
140QKI5220093 613004451650.0680.4588No
141SULF143057553260.0620.4503No
142DMRT2263006854590.0560.4433No
143RAB21557007054750.0560.4427No
144NGEF319053854950.0550.4418No
145GOLGA7698012155180.0540.4408No
146FHL16027856150.0510.4358No
147OCLN257067156400.0500.4346No
148ESRRG401018156480.0500.4345No
149PCDH7450398 415004056720.0490.4334No
150GDI2237006857060.0480.4318No
151YPEL2556060957140.0480.4316No
152NPTX1371073657400.0470.4304No
153DNAJB62810309 557045157670.0460.4291No
154HNRPH22630040 572067158950.0420.4223No
155UBE2I2680056 635044659800.0400.4179No
156MYB1660494 5860451 613070660070.0390.4166No
157EDG2629021560590.0380.4140No
158RND394050461070.0360.4115No
159NPM1473042761820.0340.4076No
160UBE2D1185040062100.0340.4063No
161DDX3Y1580278 420051962450.0330.4045No
162SCHIP1456015265550.0260.3877No
163GATA2659028066540.0240.3824No
164PAM529052866830.0230.3810No
165IER5235057566960.0230.3804No
166AP1S2780279 428070767440.0220.3779No
167EIF2S1536029267660.0210.3769No
168PKD1604067168380.0200.3731No
169EFNB2534013668690.0190.3715No
170GEM529008268880.0190.3706No
171CLASP2251013969490.0180.3674No
172TEAD1247055170240.0160.3634No
173UBE2B478049770570.0160.3617No
174KCNQ43800438 705040070730.0150.3609No
175CNOT72450338 572039770830.0150.3605No
176KLF121660095 4810288 5340546 652028671590.0140.3564No
177CRH371030171810.0130.3553No
178PALM24120068 710039873500.0100.3462No
179CFL2380239 620036874130.0090.3428No
180EFNA1384067275330.0070.3363No
181PLEKHC1265006676200.0050.3317No
182PUM24200441 591044676930.0040.3277No
183SEC23A586003577230.0040.3262No
184PCTK2570067377910.0020.3225No
185KLF10485005679350.0000.3147No
186ST6GALNAC529404008023-0.0010.3099No
187KCTD866605938075-0.0020.3071No
188NAB1430739 1230114 3390736 66600568115-0.0030.3050No
189NUP15370004528186-0.0040.3012No
190CCNJ8700478201-0.0040.3004No
191CAB3957204718243-0.0050.2982No
192ZFPM24600728346-0.0070.2927No
193B3GNT123504468352-0.0070.2924No
194NR5A21690180 69000508474-0.0090.2858No
195PLS332900828484-0.0090.2854No
196GLRA270000198486-0.0090.2853No
197PCDH82360047 42004528560-0.0100.2814No
198CBX4703328562-0.0100.2814No
199TCF2870338 50506328660-0.0120.2761No
200EPS870502048779-0.0140.2697No
201GNAI346707398803-0.0140.2685No
202FBXW1164506328838-0.0150.2667No
203PARD6B41206008848-0.0150.2663No
204MYT167705248862-0.0150.2656No
205TRAM1L1501288886-0.0160.2644No
206SYT18403648974-0.0170.2597No
207DACH12450593 57005929161-0.0200.2496No
208EIF5B1190102 42004409216-0.0210.2467No
209HMGB329401689260-0.0220.2445No
210TNFRSF11B46104469372-0.0240.2385No
211MFAP549201399448-0.0250.2345No
212LHFP34403689529-0.0270.2302No
213NFIA2760129 58602789656-0.0300.2234No
214PRDM13170347 35203019666-0.0300.2230No
215CLIC41230025 3190180 3290368 64501819709-0.0310.2209No
216TAF414501709716-0.0310.2207No
217HLF23701139743-0.0310.2194No
218ACY1L231401429764-0.0320.2184No
219WDFY33610041 4560333 45702739869-0.0340.2128No
220KCNK21230592 70004979949-0.0360.2086No
221TIAL14150048 65106059953-0.0360.2086No
222FMR1505007510022-0.0370.2050No
223TRIM2430546 117028610102-0.0390.2008No
224BHLHB3345043810111-0.0390.2006No
225USP25352003510171-0.0410.1975No
226ACVR2A611064710239-0.0420.1940No
227AFF3387010210524-0.0480.1786No
228NEGR11940731 513017010626-0.0500.1733No
229AMOTL2473008210655-0.0510.1719No
230SEMA6D4050324 5860138 635030710682-0.0520.1707No
231PLCL1237016710747-0.0530.1674No
232CNTN41780300 5570577 637001910830-0.0550.1631No
233CASR61050410835-0.0550.1631No
234CDH111230133 2100180 461011010844-0.0550.1629No
235SLC1A2223052010870-0.0560.1617No
236AKAP2555034710895-0.0560.1606No
237LEPR1340398 319032410898-0.0560.1608No
238SOX163002610921-0.0570.1598No
239PKIA407044110960-0.0580.1579No
240PAK7383016410980-0.0580.1571No
241LRRTM3421002111035-0.0600.1544No
242DNAJB5290021511096-0.0610.1513No
243MPP52100148 522063211117-0.0620.1504No
244ARHGEF17206000811196-0.0640.1464No
245GPM6A1660044 275015211392-0.0710.1360No
246SLC38A41340059 539051911445-0.0730.1335No
247LIN7B1850546 3850288 676011011560-0.0760.1275No
248NRP24070400 5860041 665044611605-0.0770.1254No
249BASP1570004411611-0.0770.1254No
250NXPH1387054611637-0.0780.1243No
251RGL11500097 690045011658-0.0790.1235No
252MTUS1780348 492060911736-0.0820.1196No
253FBXW2428001711794-0.0840.1168No
254PPP4R2589003511853-0.0860.1140No
255NAP1L536057611946-0.0900.1093No
256ADCY2461010011983-0.0920.1077No
257TUBB2A694043512010-0.0930.1066No
258LRP1B145019312044-0.0940.1052No
259HS3ST1185019312077-0.0960.1038No
260PHF21A61001412153-0.0990.1000No
261ACE2336044612224-0.1020.0966No
262ATXN1555015612348-0.1090.0903No
263ATRX2340039 3610132 421037312507-0.1180.0821No
264NDST11500427 534012112525-0.1190.0816No
265PIN1297040812605-0.1230.0778No
266DDEF11170411 407046512698-0.1290.0732No
267MGAT2476054612758-0.1340.0705No
268MMD2492010012858-0.1400.0656No
269SOX2630487 223049112863-0.1410.0659No
270CACNA1C1660128 3780300 3870092 6290403 690030112940-0.1460.0623No
271DGKA5720152 589032812976-0.1490.0610No
272VLDLR870722 3060047 5340452 655013113073-0.1560.0563No
273DNMT3A4050068 481071713112-0.1590.0548No
274ELAVL236018113114-0.1590.0554No
275SCN3B840112 1780152 5910685 610013113209-0.1660.0509No
276MATR31940170 534027813247-0.1690.0495No
277ELF21690014 2480132 3060180 319050413296-0.1730.0475No
278RKHD3618047113297-0.1730.0482No
279NPC1459002013335-0.1760.0468No
280CORO1C457039713442-0.1860.0417No
281CREB5232036813496-0.1910.0396No
282CSMD31660427 194068713606-0.2060.0344No
283GLI3569014813619-0.2070.0345No
284PTPN13206068113828-0.2310.0240No
285PPP2R5C3310121 665067213892-0.2380.0215No
286TSC22D11340739 604018113943-0.2440.0196No
287CNTFR4480092 620006413977-0.2490.0188No
288KCND21170128 210011213984-0.2500.0194No
289SDC2198016814027-0.2550.0181No
290NDN567007514061-0.2600.0173No
291GOSR21850059 1980687 459018414191-0.2790.0113No
292ETS15270278 6450717 662046514206-0.2820.0116No
293PHACTR33850435 590044514280-0.2940.0087No
294PTHLH529073914375-0.3110.0047No
295PHF63120632 399004114389-0.3130.0052No
296PTBP1407073614401-0.3150.0058No
297HECTD22680014 306068914414-0.3180.0063No
298PPAP2B3190397 473028014538-0.3390.0009No
299SLC14A11580458 2230707 570015414837-0.399-0.0139No
300ANLN1780113 2470537 684004714839-0.399-0.0124No
301CDYL4200142 4730397 606040014892-0.411-0.0137No
302HIC2401043314915-0.418-0.0133No
303SEMA3F5420601 677073115044-0.452-0.0186No
304HDHD22850411 694016815084-0.462-0.0190No
305PAPOLA4200286 485011215133-0.474-0.0198No
306NIN3450576 508004815229-0.510-0.0231No
307DLC11090632 645059415250-0.516-0.0222No
308GIT26040039 677018115398-0.568-0.0281No
309EGR3694012815440-0.582-0.0282No
310TUBB3407028015528-0.614-0.0306No
311FBXW74210338 705028015742-0.703-0.0396No
312GABPA2360017 4780301 485027915785-0.730-0.0391No
313SRF70139 232003915926-0.804-0.0437No
314PCTK1456007916205-0.964-0.0553No
315PLK2645015216252-0.991-0.0540No
316RHOA580142 5900131 534045016279-1.002-0.0516No
317SCD268044116367-1.046-0.0524No
318TARDBP870390 235009316405-1.070-0.0504No
319LYPLA2150011216445-1.089-0.0484No
320ARHGDIA590023916453-1.095-0.0446No
321GPR146383033316504-1.136-0.0431No
322SLC16A2666073916616-1.206-0.0446No
323SFRS250707 38059316661-1.237-0.0423No
324FGD1478002116750-1.302-0.0421No
325SBF1638070716926-1.460-0.0462No
326ARID2110647 539043516945-1.467-0.0416No
327RDH10665007016946-1.467-0.0360No
328UBQLN1110280 730376 2470133 659059416948-1.469-0.0305No
329LCP1428039717133-1.583-0.0346No
330RNF5276008817148-1.593-0.0293No
331COPS8281054117281-1.711-0.0300No
332EIF2B5430315 690040017341-1.757-0.0266No
333FEZ2591018117498-1.902-0.0279No
334MXD3622001417737-2.166-0.0327No
335IHPK1134005317892-2.365-0.0322No
336BAT3199059417935-2.436-0.0252No
337PPM1F770687 124059217946-2.464-0.0164No
338HRB1660397 611039817978-2.507-0.0086No
339PPP1R9B313061918017-2.558-0.0010No
340ETV511001718034-2.6030.0080No
341SMARCD13060193 3850184 640036918219-2.9340.0091No
342IGSF3645052418353-3.3080.0144No
Table: GSEA details [plain text format]



Fig 2: CAGTATT,MIR-200B,MIR-200C,MIR-429   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CAGTATT,MIR-200B,MIR-200C,MIR-429: Random ES distribution   
Gene set null distribution of ES for CAGTATT,MIR-200B,MIR-200C,MIR-429