Details for gene set V$NMYC

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	V$NMYC_01
Enrichment Score (ES)	0.5915739
Normalized Enrichment Score (NES)	1.643473
Nominal p-value	0.0
FDR q-value	0.05064397
FWER p-Value	0.172

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TIMM10	610070 1450019	1	11.709	0.0628	Yes
2	FBL	5130020	37	6.713	0.0969	Yes
3	VARS2	1410017 3800114 4210270	38	6.639	0.1325	Yes
4	CEBPB	2970019	40	6.620	0.1679	Yes
5	ATAD3A	4050288	48	6.356	0.2016	Yes
6	EIF4B	5390563 5270577	144	4.909	0.2228	Yes
7	ATP5G1	5290019	171	4.688	0.2466	Yes
8	PA2G4	2030463	218	4.396	0.2676	Yes
9	G6PC3	1580487 5390253	227	4.337	0.2905	Yes
10	PPAT	1980019	255	4.206	0.3116	Yes
11	NOL5A	5570139	312	3.941	0.3297	Yes
12	HMOX1	1740687	318	3.917	0.3504	Yes
13	PRDX4	3800039	350	3.754	0.3689	Yes
14	IPO4	5050619	353	3.741	0.3888	Yes
15	VPS16	430064 3390041 6860301	448	3.424	0.4021	Yes
16	BCL7C	460050	550	3.143	0.4135	Yes
17	PABPC1	2650180 2690253 6020632 1990270	553	3.139	0.4302	Yes
18	HSPE1	3170438	569	3.119	0.4461	Yes
19	RPL22	4070070	626	2.971	0.4590	Yes
20	FKBP10	1340706	727	2.766	0.4684	Yes
21	NR1D1	2360471 770746 6590204	825	2.570	0.4770	Yes
22	HYAL2	1500152	843	2.533	0.4896	Yes
23	LMNB1	5890292 6020008	851	2.519	0.5028	Yes
24	PES1	2470427	878	2.487	0.5147	Yes
25	SH3KBP1	670102 2850458 7000309	1035	2.251	0.5183	Yes
26	POLR3E	380152	1063	2.228	0.5288	Yes
27	LIG3	2940300	1101	2.182	0.5385	Yes
28	GTPBP1	2230541 4560528	1249	1.997	0.5412	Yes
29	SRP72	3990427	1373	1.845	0.5445	Yes
30	HMGN2	3140091	1422	1.774	0.5514	Yes
31	GPD1	2480095	1444	1.744	0.5596	Yes
32	EIF4G1	4070446	1608	1.575	0.5592	Yes
33	FKBP5	2190048	1637	1.548	0.5660	Yes
34	COPS7A	3940458 7000022	1641	1.544	0.5741	Yes
35	DLX1	360168	1792	1.408	0.5735	Yes
36	U2AF2	450600 4670128 5420292	1806	1.393	0.5803	Yes
37	ELOVL6	5340746	1989	1.229	0.5770	Yes
38	GADD45G	2510142	2057	1.175	0.5797	Yes
39	KRTCAP2	5220040	2126	1.119	0.5820	Yes
40	FHOD1	2680279	2175	1.077	0.5852	Yes
41	HSPD1	60097 2030451	2231	1.033	0.5877	Yes
42	PABPC4	1990170 6760270 5390138	2315	1.001	0.5886	Yes
43	GJA1	5220731	2415	0.961	0.5884	Yes
44	ZCCHC7	6510592	2450	0.942	0.5916	Yes
45	TPM2	520735 3870390	2852	0.695	0.5736	No
46	PPARGC1B	3290114	2928	0.659	0.5730	No
47	PSEN2	130382	3119	0.562	0.5657	No
48	CACNA1D	1740315 4730731	3123	0.558	0.5686	No
49	B4GALT2	780037	3151	0.546	0.5700	No
50	CDC14A	4050132	3165	0.538	0.5722	No
51	CTSF	6100021	3178	0.533	0.5744	No
52	MYST3	5270500	3239	0.510	0.5739	No
53	RBBP6	2320129	3493	0.418	0.5624	No
54	RPL13A	2680519 5700142	3504	0.415	0.5641	No
55	NRAS	6900577	3508	0.415	0.5662	No
56	CTBP2	430309 3710079	3520	0.412	0.5678	No
57	AMPD2	630093 1170070	3718	0.346	0.5589	No
58	ATP6V0B	2810112	3927	0.292	0.5492	No
59	SOX12	1780037	4007	0.275	0.5464	No
60	MAPKAPK3	630520	4038	0.269	0.5462	No
61	NR5A1	70707	4347	0.214	0.5307	No
62	XRN2	130603 1230113 4230309	4471	0.196	0.5251	No
63	ADCY3	2350347 3440242	4479	0.195	0.5257	No
64	RAD9A	110300 1940632 3990390 6040014	4528	0.187	0.5241	No
65	BARHL1	4210113	4630	0.174	0.5196	No
66	TIAL1	4150048 6510605	4890	0.146	0.5063	No
67	GPC3	6180735	4898	0.145	0.5067	No
68	BAI2	380632 630113 6650170	4945	0.141	0.5050	No
69	ETV1	70735 2940603 5080463	4979	0.138	0.5039	No
70	ARRDC3	4610390	5168	0.122	0.4944	No
71	DUSP4	2690044 2850593	5197	0.120	0.4935	No
72	SC5DL	6650390	5304	0.113	0.4884	No
73	COL2A1	460446 3940500	5341	0.111	0.4870	No
74	RBM3	2360739 5700167	5376	0.109	0.4857	No
75	SEMA7A	2630239 5050593	5414	0.106	0.4843	No
76	NXPH1	3870546	5470	0.103	0.4819	No
77	PANK3	3060687	5815	0.086	0.4637	No
78	NEUROD2	5290097	5821	0.086	0.4639	No
79	GPS1	2470037 4760315 6200528 7100040	5878	0.083	0.4613	No
80	SOCS5	3830398 7100093	5957	0.080	0.4575	No
81	JPH1	610739	6264	0.069	0.4413	No
82	ADAMTS17	6510739	6270	0.069	0.4414	No
83	POGK	5290315	6276	0.069	0.4415	No
84	RTN4RL2	6450609	6491	0.062	0.4302	No
85	STMN4	2900091	6809	0.052	0.4133	No
86	SLC12A5	1980692	6878	0.051	0.4099	No
87	LIN28	6590672	7153	0.044	0.3952	No
88	NRXN1	460408 5340270 6370066	7234	0.043	0.3911	No
89	NKX2-2	4150731	7312	0.042	0.3872	No
90	AKAP10	2630504 5910577	7313	0.042	0.3874	No
91	DNMT3A	4050068 4810717	7333	0.041	0.3866	No
92	RUNX2	1400193 4230215	7613	0.036	0.3717	No
93	WEE1	3390070	7693	0.034	0.3675	No
94	SLC38A5	540093	7809	0.032	0.3615	No
95	ADAM10	3780156	7911	0.030	0.3562	No
96	PRKCE	5700053	7978	0.029	0.3527	No
97	DNAJB9	460114	8175	0.025	0.3422	No
98	LAP3	2570064	8294	0.023	0.3360	No
99	PCDHA10	3830725	8382	0.022	0.3314	No
100	PLA2G4A	6380364	8459	0.021	0.3274	No
101	SLC17A2	870593 2810035	8564	0.019	0.3218	No
102	GRIN2A	6550538	8597	0.019	0.3202	No
103	BMP2K	60541 5570504	8689	0.017	0.3153	No
104	HTF9C	3190048 4120132	8805	0.015	0.3092	No
105	NPM1	4730427	9337	0.007	0.2804	No
106	HS3ST3A1	2230497	9486	0.005	0.2724	No
107	ALX4	3870019	9569	0.004	0.2680	No
108	MTHFD1	5900398 6520427	9650	0.003	0.2637	No
109	ADPRHL1	4150133 6650300	9709	0.001	0.2605	No
110	FLT3	2640487	9828	-0.000	0.2541	No
111	ABCA1	6290156	9882	-0.001	0.2513	No
112	HPCA	6860010	10123	-0.005	0.2383	No
113	TIMM9	2450484	10266	-0.007	0.2306	No
114	EN2	7000368	10887	-0.017	0.1971	No
115	B3GALT2	430136	11083	-0.020	0.1866	No
116	ANGPT2	1230458 5720706 6040605	11206	-0.023	0.1801	No
117	CHRM1	4280619	11235	-0.023	0.1787	No
118	NUP153	7000452	11304	-0.024	0.1752	No
119	TESK2	6520524	11382	-0.026	0.1711	No
120	LHX9	2350112	11522	-0.028	0.1637	No
121	CUGBP1	450292 510022 7050176 7050215	11648	-0.031	0.1571	No
122	SNCAIP	4010551	11789	-0.033	0.1497	No
123	RCL1	1980408 2680008 3800176	11846	-0.035	0.1469	No
124	FGF11	840292	11852	-0.035	0.1468	No
125	NDUFS1	2650253	11853	-0.035	0.1470	No
126	APOA5	6130471	11918	-0.036	0.1437	No
127	POU3F1	3710022	11956	-0.037	0.1419	No
128	RNF128	1230300 5670273	12190	-0.043	0.1295	No
129	SEPT3	3830022 5290079	12244	-0.044	0.1268	No
130	KIAA0427	1690435	12347	-0.046	0.1216	No
131	HOXC13	4070722	12451	-0.049	0.1162	No
132	NEUROD6	4670731	12470	-0.049	0.1155	No
133	EIF3S1	6130368 6770044	12508	-0.050	0.1138	No
134	SCFD2	2480504	12723	-0.057	0.1025	No
135	DLC1	1090632 6450594	12770	-0.058	0.1003	No
136	MAX	5220021	13015	-0.066	0.0874	No
137	HHIP	6940438	13205	-0.074	0.0776	No
138	GRK6	1500053	13365	-0.080	0.0694	No
139	SGTB	460170	13480	-0.085	0.0637	No
140	ENPP6	110524 580563	13674	-0.097	0.0537	No
141	CHST11	6760546	13847	-0.109	0.0450	No
142	PLAGL1	3190082 6200193	13881	-0.111	0.0438	No
143	MCM8	6130743	14267	-0.144	0.0237	No
144	GNA13	4590102	14413	-0.158	0.0166	No
145	SFXN2	2650563 3140095 3830762 3870398	14607	-0.184	0.0072	No
146	RXRB	1780040 5340438	14691	-0.196	0.0037	No
147	PLAG1	1450142 3870139 6520039	14906	-0.239	-0.0066	No
148	HRH3	6180040	15027	-0.271	-0.0117	No
149	KCNK5	4590504 6860687	15033	-0.273	-0.0105	No
150	HOXB7	4540706 4610358	15205	-0.323	-0.0180	No
151	ARF6	3520026	15246	-0.339	-0.0184	No
152	RAMP2	6860037	15303	-0.355	-0.0195	No
153	GADD45B	2350408	15364	-0.376	-0.0207	No
154	ZZZ3	780133 2320239 2640452 5080706 6550341	15484	-0.427	-0.0249	No
155	IPO13	3870088	15626	-0.485	-0.0299	No
156	TLE3	580040 4730121	15642	-0.493	-0.0281	No
157	MNT	4920575	15674	-0.510	-0.0271	No
158	SEMA3F	5420601 6770731	15698	-0.520	-0.0255	No
159	HRSP12	610136 2510133 4280561 2760047	15835	-0.583	-0.0298	No
160	PFN1	6130132	16033	-0.689	-0.0367	No
161	USP2	1190292 1240253 4850035	16232	-0.826	-0.0431	No
162	CLCN2	1940021	16290	-0.869	-0.0415	No
163	SCYL1	5050717	16346	-0.908	-0.0396	No
164	SLC20A1	6420014	16371	-0.920	-0.0360	No
165	TOP1	770471 4060632 6650324	16388	-0.933	-0.0318	No
166	HBP1	2510102 3130010 4210619	16493	-0.998	-0.0321	No
167	UBE1	4150139 7050463	16518	-1.011	-0.0280	No
168	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	16774	-1.228	-0.0352	No
169	ANXA6	2190014	16831	-1.281	-0.0314	No
170	PDK2	2690017	16873	-1.327	-0.0265	No
171	ZHX2	2900452	17055	-1.511	-0.0282	No
172	TEF	1050050 3120397 4060487	17205	-1.711	-0.0271	No
173	PFKFB3	630706	17238	-1.747	-0.0195	No
174	MXD4	4810113	17601	-2.318	-0.0267	No
175	AP1GBP1	2510372	17816	-2.729	-0.0236	No
176	WBP2	3170128	18235	-4.053	-0.0246	No
177	RPIA	780079	18261	-4.195	-0.0034	No
178	STAT3	460040 3710341	18266	-4.219	0.0190	No