Details for gene set V$MYOD

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	V$MYOD_Q6
Enrichment Score (ES)	-0.55028
Normalized Enrichment Score (NES)	-1.5060624
Nominal p-value	0.0
FDR q-value	0.14686264
FWER p-Value	0.781

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CKM	1450524	450	3.421	0.0021	No
2	SREBF2	3390692	514	3.228	0.0236	No
3	ELOVL1	2450019 4760138 5340685	755	2.717	0.0316	No
4	PPP2R4	670280 2900097	1156	2.115	0.0263	No
5	HMGA1	6580408	1201	2.059	0.0399	No
6	SPI1	1410397	1318	1.921	0.0484	No
7	WNT6	4570364	1804	1.397	0.0330	No
8	CASKIN2	2030113	1841	1.370	0.0416	No
9	TNFRSF21	6380100	2148	1.096	0.0335	No
10	HES6	540411 6550504	2195	1.056	0.0392	No
11	IGF2	6510020	2373	0.983	0.0372	No
12	PRKACA	2640731 4050048	2519	0.891	0.0362	No
13	SCG2	5670438 130671	2707	0.772	0.0321	No
14	CHCHD3	4200044	2864	0.686	0.0289	No
15	ATOH7	5550121	3022	0.610	0.0251	No
16	PKP4	3710400 5890097	3132	0.554	0.0235	No
17	H2AFZ	1470168	3180	0.533	0.0251	No
18	ITPR3	4010632	3189	0.529	0.0287	No
19	STK3	7100427	3498	0.417	0.0153	No
20	STRN3	1450093 6200685	3563	0.393	0.0148	No
21	FBXO32	110037 610750	3672	0.361	0.0118	No
22	INVS	4200632 6620528	3780	0.327	0.0085	No
23	SYNGR1	5130452 6650056	3875	0.304	0.0058	No
24	TUFT1	540047 2370010	3972	0.280	0.0027	No
25	USF1	4280156 4610114 6370113	4065	0.261	-0.0002	No
26	ACTN3	3140541 6480598	4208	0.235	-0.0061	No
27	DSCAM	1780050 2450731 2810438	4362	0.212	-0.0128	No
28	NR2E1	4730288	4420	0.202	-0.0143	No
29	RHOBTB1	1410010	4447	0.198	-0.0142	No
30	RIN1	510593	4468	0.196	-0.0137	No
31	MMP11	1980619	4718	0.163	-0.0260	No
32	NBL1	2480021	4982	0.138	-0.0392	No
33	LCN9	5050450	5161	0.122	-0.0479	No
34	HR	2690095 6200300	5198	0.120	-0.0489	No
35	SEMA4C	1980315	5199	0.120	-0.0480	No
36	CMYA1	6900632	5239	0.117	-0.0492	No
37	PPARGC1A	4670040	5446	0.104	-0.0595	No
38	HDAC9	1990010 2260133	5455	0.104	-0.0592	No
39	STARD13	540722	5827	0.085	-0.0786	No
40	TTN	2320161 4670056 6550026	5921	0.082	-0.0830	No
41	NPPC	2320647	5948	0.081	-0.0838	No
42	GUCY1A3	110253 2640735 4070037	5975	0.080	-0.0846	No
43	CHRND	840403 2260670	5983	0.079	-0.0844	No
44	HS6ST3	5910138	6151	0.073	-0.0928	No
45	INHA	6100102	6183	0.072	-0.0940	No
46	MLLT6	3870168	6273	0.069	-0.0983	No
47	MYOZ3	1990138	6335	0.067	-0.1010	No
48	CDH1	1940736	6397	0.065	-0.1038	No
49	CER1	840102	6399	0.065	-0.1034	No
50	PAK3	4210136	6598	0.059	-0.1137	No
51	GRID2	2680242	6700	0.056	-0.1187	No
52	GATA2	6590280	6839	0.052	-0.1258	No
53	SLC12A5	1980692	6878	0.051	-0.1275	No
54	PLCB1	2570050 7100102	6935	0.049	-0.1301	No
55	TBR1	5130053	6949	0.049	-0.1304	No
56	EMX1	6130537	7017	0.047	-0.1337	No
57	LIN28	6590672	7153	0.044	-0.1407	No
58	PTPRJ	4010707	7521	0.037	-0.1603	No
59	MAP3K13	3190017	7591	0.036	-0.1637	No
60	HSD11B2	5900053	7736	0.033	-0.1713	No
61	CHRNG	5860273	8259	0.024	-0.1994	No
62	KAZALD1	380603	8288	0.023	-0.2007	No
63	COL4A4	1050541	8368	0.022	-0.2049	No
64	NHLH1	6100452	8743	0.016	-0.2250	No
65	FGF17	3130022	8847	0.014	-0.2305	No
66	MID1	4070114 4760458	8880	0.014	-0.2321	No
67	DCT	1090347 3840494	9393	0.006	-0.2598	No
68	ASB14	5860427	9435	0.006	-0.2620	No
69	ANK2	6510546	9438	0.006	-0.2620	No
70	KCNE1L	4670092	9611	0.003	-0.2713	No
71	ASB15	450563	9870	-0.001	-0.2853	No
72	ANKRD2	6590427	9995	-0.003	-0.2920	No
73	TAC4	4730070	10125	-0.005	-0.2990	No
74	SYT4	5080193	10150	-0.005	-0.3002	No
75	RND1	5080300	10181	-0.006	-0.3018	No
76	NKX6-2	2450332 3120333	10294	-0.008	-0.3078	No
77	GALR3	4850113	10407	-0.009	-0.3138	No
78	ABL2	580021	10533	-0.011	-0.3205	No
79	COL4A3	5910075	10618	-0.012	-0.3250	No
80	FSCN2	1230039	10707	-0.014	-0.3296	No
81	ERBB4	4610400 4810017	10737	-0.014	-0.3311	No
82	EIF2C1	6900551	10860	-0.016	-0.3376	No
83	CDON	540204	11029	-0.019	-0.3465	No
84	DSCAML1	1850403 5550079	11079	-0.020	-0.3490	No
85	B3GALT2	430136	11083	-0.020	-0.3490	No
86	RIMS2	670725	11093	-0.020	-0.3494	No
87	CCNL2	6520167	11275	-0.024	-0.3590	No
88	ARL4A	6290091	11579	-0.029	-0.3752	No
89	CUGBP1	450292 510022 7050176 7050215	11648	-0.031	-0.3786	No
90	ALG6	4060131	11675	-0.031	-0.3798	No
91	KCNQ4	3800438 7050400	11715	-0.032	-0.3817	No
92	FOXI1	3710095 6620195	11772	-0.033	-0.3845	No
93	RASGRF2	1990047	11910	-0.036	-0.3916	No
94	TREX2	4920707	12076	-0.040	-0.4002	No
95	USP15	610592 3520504	12094	-0.040	-0.4008	No
96	TRPV3	540341	12132	-0.042	-0.4025	No
97	SOST	1170195	12191	-0.043	-0.4053	No
98	PROX1	4210193	12322	-0.046	-0.4120	No
99	ELAVL4	50735 3360086 5220167	12326	-0.046	-0.4118	No
100	LRAT	5130603	12339	-0.046	-0.4121	No
101	DPF3	2650128 2970168	12579	-0.052	-0.4247	No
102	TRIM3	5570156	12632	-0.054	-0.4271	No
103	HTR7	2680176	12728	-0.057	-0.4318	No
104	GGN	1410528 4210082 5290170	12732	-0.057	-0.4315	No
105	POU3F3	6400047	12758	-0.058	-0.4324	No
106	FBXW11	6450632	12804	-0.059	-0.4344	No
107	NEB	580735	12816	-0.060	-0.4345	No
108	NPEPPS	2630731	12870	-0.061	-0.4369	No
109	HEYL	5860528	12938	-0.064	-0.4401	No
110	SMARCA5	6620050	13032	-0.067	-0.4446	No
111	ERBB3	5890372	13275	-0.076	-0.4571	No
112	EFNA1	3840672	13359	-0.080	-0.4610	No
113	ELAVL3	2850014	13765	-0.102	-0.4822	No
114	CYP26A1	380022 2690600	13810	-0.106	-0.4837	No
115	PHACTR3	3850435 5900445	13838	-0.108	-0.4844	No
116	TJP1	6350184	13886	-0.112	-0.4860	No
117	PRKAG2	2340100	14037	-0.123	-0.4932	No
118	NOL4	5050446 5360519	14076	-0.126	-0.4943	No
119	TAGAP	3290433	14354	-0.152	-0.5081	No
120	BLR1	1500300 5420017	14702	-0.198	-0.5254	No
121	TGM1	1090500	14727	-0.202	-0.5251	No
122	MDGA1	1170139	14732	-0.203	-0.5238	No
123	ITGB4	1740021 3840482	14739	-0.205	-0.5225	No
124	FUT8	1340068 2340056	14817	-0.220	-0.5250	No
125	MTUS1	780348 4920609	14828	-0.223	-0.5238	No
126	BCL9	7100112	14956	-0.252	-0.5288	No
127	CRAT	540020 2060364 3520148	15138	-0.300	-0.5362	No
128	POFUT1	1570458	15234	-0.332	-0.5388	No
129	NLK	2030010 2450041	15237	-0.333	-0.5364	No
130	GNAS	630441 1850373 4050152	15256	-0.341	-0.5347	No
131	ADAM11	1050008 3130494	15272	-0.349	-0.5328	No
132	VKORC1L1	110220 1400050	15386	-0.388	-0.5359	No
133	MAP3K7IP2	2340242	15413	-0.395	-0.5343	No
134	SPOP	450035	15589	-0.469	-0.5401	No
135	NCKIPSD	2940156	15615	-0.479	-0.5378	No
136	CASQ1	6290035 7000707	15682	-0.513	-0.5374	No
137	PDGFB	3060440 6370008	15889	-0.613	-0.5438	No
138	HN1	3360156	15969	-0.656	-0.5430	No
139	OSR1	1500025	16095	-0.727	-0.5442	Yes
140	ACADSB	520170	16154	-0.762	-0.5414	Yes
141	ZIC4	1500082	16172	-0.777	-0.5363	Yes
142	USP2	1190292 1240253 4850035	16232	-0.826	-0.5332	Yes
143	CHRNB1	1190671	16265	-0.850	-0.5283	Yes
144	KCNN3	6520600 6420138	16556	-1.032	-0.5360	Yes
145	ARHGEF2	3360577	16580	-1.046	-0.5292	Yes
146	GFRA1	3610152	16696	-1.150	-0.5265	Yes
147	BEX2	5670433	17135	-1.613	-0.5378	Yes
148	SSH2	360056	17159	-1.657	-0.5262	Yes
149	SIPA1	5220687	17208	-1.715	-0.5156	Yes
150	CRELD1	2060253	17369	-1.913	-0.5094	Yes
151	AP4S1	4730292	17414	-2.001	-0.4963	Yes
152	TLK2	1170161	17509	-2.142	-0.4849	Yes
153	ITGA6	3830129	17748	-2.591	-0.4777	Yes
154	NRF1	2650195	17980	-3.111	-0.4662	Yes
155	GALNT2	2260279 4060239	18023	-3.261	-0.4432	Yes
156	POLD4	2320082	18129	-3.623	-0.4209	Yes
157	ATP1B1	3130594	18145	-3.686	-0.3932	Yes
158	ARID5A	2450133	18188	-3.859	-0.3656	Yes
159	NEDD4L	6380368	18303	-4.476	-0.3372	Yes
160	GMPR	3990022	18309	-4.502	-0.3026	Yes
161	SELL	1190500	18349	-4.708	-0.2683	Yes
162	PSTPIP1	3190156	18388	-4.968	-0.2319	Yes
163	PLAGL2	1770148	18480	-5.805	-0.1920	Yes
164	DEF6	840593	18489	-6.000	-0.1460	Yes
165	TMEM24	5860039	18490	-6.013	-0.0995	Yes
166	KCNH2	1170451	18497	-6.062	-0.0529	Yes
167	TEC	1400576	18580	-7.663	0.0020	Yes