Details for gene set V$GFI1

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	V$GFI1_01
Enrichment Score (ES)	-0.5449416
Normalized Enrichment Score (NES)	-1.5197457
Nominal p-value	0.0
FDR q-value	0.13073343
FWER p-Value	0.714

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP5G2	840068	183	4.628	0.0196	No
2	SREBF2	3390692	514	3.228	0.0223	No
3	CSAD	770215	537	3.174	0.0414	No
4	ABCF2	630040 3140035 6450601	979	2.325	0.0323	No
5	USP5	4850017	1138	2.142	0.0374	No
6	HMGA1	6580408	1201	2.059	0.0472	No
7	MYO1C	3190398	1358	1.863	0.0506	No
8	STMN1	1990717	1415	1.783	0.0590	No
9	TMPRSS2	2970279	1526	1.651	0.0635	No
10	EXOC7	3060037	1611	1.571	0.0690	No
11	MCTS1	6130133	1767	1.433	0.0698	No
12	MBNL1	2640762 7100048	2223	1.036	0.0517	No
13	SFRS2	50707 380593	2242	1.028	0.0573	No
14	SERTAD4	130593	2447	0.943	0.0522	No
15	TCF4	520021	2660	0.803	0.0458	No
16	MYH10	2640673	2768	0.735	0.0447	No
17	TPBG	630161	2803	0.718	0.0475	No
18	XPO5	2850286	2815	0.713	0.0514	No
19	TLK1	7100605	2845	0.699	0.0543	No
20	PPARGC1B	3290114	2928	0.659	0.0541	No
21	CAMK2D	2370685	3059	0.594	0.0508	No
22	PDC	3140400 3780184	3074	0.584	0.0538	No
23	YWHAE	5310435	3098	0.572	0.0562	No
24	PPP2R2A	2900014 5700575	3120	0.561	0.0586	No
25	ETS1	5270278 6450717 6620465	3159	0.542	0.0600	No
26	TRIM23	580168 6510672	3179	0.533	0.0624	No
27	AVP	2100113	3202	0.526	0.0646	No
28	PRKAG1	6450091	3215	0.520	0.0672	No
29	SLC4A7	2370056	3517	0.412	0.0535	No
30	CDH13	5130368 5340114	3772	0.329	0.0418	No
31	CNKSR1	730528 3390672	3773	0.329	0.0439	No
32	CACNB2	1500095 7330707	3778	0.328	0.0458	No
33	CNTN6	2630711	3804	0.322	0.0465	No
34	SLC25A18	4540047	3844	0.311	0.0464	No
35	RPS6KB1	1450427 5080110 6200563	3850	0.310	0.0481	No
36	SOX9	5720681	4111	0.254	0.0356	No
37	NR2F2	3170609 3310577	4356	0.213	0.0237	No
38	LUZP1	940075 4280458 6180070	4469	0.196	0.0189	No
39	PRIMA1	1500673 6760671	4470	0.196	0.0202	No
40	PDE4D	2470528 6660014	4523	0.188	0.0185	No
41	ICAM4	6770053	4668	0.169	0.0118	No
42	HOXA3	3610632 6020358	4695	0.166	0.0114	No
43	MTMR4	4540524	4886	0.146	0.0021	No
44	NCAM1	3140026	5005	0.136	-0.0035	No
45	JPH4	780020	5236	0.117	-0.0152	No
46	ICAM5	2350647	5283	0.114	-0.0170	No
47	PPARGC1A	4670040	5446	0.104	-0.0251	No
48	ITGA10	6330438	5457	0.104	-0.0250	No
49	ANGPT1	3990368 5130288 6770035	5559	0.098	-0.0298	No
50	FOXP2	3520561 4150372 4760524	5618	0.095	-0.0324	No
51	TCF12	3610324 7000156	5640	0.094	-0.0329	No
52	GAS2	1340082	5663	0.093	-0.0335	No
53	OTP	2630070	5748	0.089	-0.0375	No
54	RORA	380164 5220215	5758	0.089	-0.0374	No
55	PEA15	4590685	5775	0.088	-0.0377	No
56	BAI3	940692	5928	0.081	-0.0455	No
57	ZFPM2	460072	5936	0.081	-0.0453	No
58	HOXC8	6220050	5940	0.081	-0.0450	No
59	MAP2K7	2260086	5956	0.081	-0.0453	No
60	PI15	3840133	6077	0.076	-0.0513	No
61	NFIA	2760129 5860278	6204	0.071	-0.0577	No
62	HOXA9	610494 4730040 5130601	6208	0.071	-0.0574	No
63	GPR17	5890671	6287	0.069	-0.0612	No
64	HOXD11	2260242	6297	0.068	-0.0612	No
65	ZIC1	670113	6317	0.068	-0.0618	No
66	DDR2	7050273	6519	0.061	-0.0724	No
67	DCX	130075 5360025 7050673	6732	0.055	-0.0835	No
68	CGN	5890139 6370167 6400537	6777	0.053	-0.0856	No
69	ASB4	2100064 3060059	6860	0.051	-0.0897	No
70	ZIC3	380020	6894	0.051	-0.0912	No
71	HOXB8	3710450	6906	0.050	-0.0914	No
72	TBR1	5130053	6949	0.049	-0.0934	No
73	HIST1H1E	6980706	7112	0.045	-0.1019	No
74	KLF15	4230164	7119	0.045	-0.1019	No
75	MEF2C	670025 780338	7167	0.044	-0.1042	No
76	CDH6	4730541	7475	0.038	-0.1206	No
77	NGEF	3190538	7477	0.038	-0.1204	No
78	PBX1	6660301	7633	0.035	-0.1286	No
79	GPR20	6620601	7695	0.034	-0.1317	No
80	BNC2	4810603	7832	0.031	-0.1389	No
81	SP8	4060576	7989	0.028	-0.1472	No
82	C1QTNF7	2970619	8028	0.028	-0.1491	No
83	CACNG3	520093	8070	0.027	-0.1511	No
84	HOXC4	1940193	8096	0.026	-0.1523	No
85	SH3BGRL2	1780239	8103	0.026	-0.1525	No
86	HOXA10	6110397 7100458	8232	0.024	-0.1593	No
87	PROCR	4920687	8297	0.023	-0.1626	No
88	EBF2	940324	8355	0.022	-0.1655	No
89	KLF12	1660095 4810288 5340546 6520286	8472	0.021	-0.1717	No
90	ITSN1	2640577	8598	0.019	-0.1784	No
91	CLMN	1340446 1660433 2940670	8637	0.018	-0.1803	No
92	HOXD10	6100039	8735	0.016	-0.1855	No
93	DSCR1L1	940438	8801	0.015	-0.1889	No
94	PCDH8	2360047 4200452	8827	0.015	-0.1902	No
95	PLCD4	6450040	8911	0.014	-0.1946	No
96	DEPDC2	5220102	9067	0.011	-0.2029	No
97	TFEC	1170722	9434	0.006	-0.2228	No
98	CALN1	3610722	9683	0.002	-0.2362	No
99	TFB1M	2190110	9832	-0.000	-0.2442	No
100	PURA	3870156	9881	-0.001	-0.2468	No
101	HOXB3	520292	9890	-0.001	-0.2473	No
102	HIST1H1T	130632	9976	-0.003	-0.2519	No
103	HOXB6	4210739	10098	-0.005	-0.2584	No
104	DSPP	5890403	10127	-0.005	-0.2599	No
105	SOX15	2470603	10142	-0.005	-0.2606	No
106	NRXN3	1400546 3360471	10156	-0.006	-0.2613	No
107	GPRC5D	4760021	10209	-0.006	-0.2641	No
108	GRPR	6020170	10273	-0.007	-0.2674	No
109	PHF8	70722	10352	-0.009	-0.2716	No
110	PTHLH	5290739	10688	-0.013	-0.2897	No
111	SGK2	1850070	10710	-0.014	-0.2908	No
112	CDON	540204	11029	-0.019	-0.3079	No
113	BMP4	380113	11090	-0.020	-0.3110	No
114	SLC26A3	380750	11201	-0.022	-0.3168	No
115	GFRA3	6510609	11211	-0.023	-0.3172	No
116	CHRM1	4280619	11235	-0.023	-0.3183	No
117	TSGA10	450594 3130435 4920093	11347	-0.025	-0.3242	No
118	PHYHIP	1170377	11387	-0.026	-0.3261	No
119	MSR1	940538	11474	-0.027	-0.3306	No
120	CTLA4	6590537	11494	-0.028	-0.3315	No
121	NKX2-8	50022	11688	-0.031	-0.3417	No
122	RKHD3	6180471	11698	-0.032	-0.3420	No
123	EDN1	1770047	11782	-0.033	-0.3463	No
124	BDNF	2940128 3520368	11802	-0.034	-0.3471	No
125	POU3F1	3710022	11956	-0.037	-0.3552	No
126	HOXA6	2340333	11979	-0.038	-0.3561	No
127	TLR1	1410524	12176	-0.042	-0.3665	No
128	NEXN	1240017 5290047	12282	-0.045	-0.3719	No
129	ELAVL4	50735 3360086 5220167	12326	-0.046	-0.3740	No
130	CRYZL1	730022 2320044	12434	-0.049	-0.3795	No
131	DPF3	2650128 2970168	12579	-0.052	-0.3869	No
132	GREM1	3940180	12587	-0.052	-0.3870	No
133	SPAG7	4560524	12640	-0.054	-0.3895	No
134	MEIS1	1400575	12643	-0.054	-0.3892	No
135	CREB5	2320368	12691	-0.056	-0.3914	No
136	CPEB3	3940164	12871	-0.061	-0.4007	No
137	MRGPRF	4780746	13166	-0.072	-0.4162	No
138	DSG3	3940014	13199	-0.073	-0.4175	No
139	SOX5	2370576 2900167 3190128 5050528	13267	-0.076	-0.4207	No
140	DNAJB4	380195 2760372 3940735	13291	-0.077	-0.4214	No
141	GRK6	1500053	13365	-0.080	-0.4249	No
142	SOSTDC1	6760017	13566	-0.091	-0.4351	No
143	RARB	430139 1410138	13572	-0.091	-0.4348	No
144	PHACTR3	3850435 5900445	13838	-0.108	-0.4485	No
145	TRDN	1580411	13906	-0.114	-0.4514	No
146	IRX3	4200112	13913	-0.114	-0.4510	No
147	CDX2	3850349	14264	-0.144	-0.4691	No
148	RAB6B	5860121	14521	-0.170	-0.4819	No
149	JMJD1C	940575 2120025	14798	-0.217	-0.4955	No
150	BCL9	7100112	14956	-0.252	-0.5024	No
151	TCF1	5390022	15216	-0.325	-0.5144	No
152	TRAF4	3060041 4920528 6980286	15390	-0.388	-0.5213	No
153	LAMA3	1190131 5290239	15511	-0.437	-0.5250	No
154	ELMO3	110372 2640019	15554	-0.454	-0.5244	No
155	BPGM	5080520	15609	-0.476	-0.5243	No
156	ATF2	2260348 2480441	15990	-0.670	-0.5407	Yes
157	PDLIM1	450100	16060	-0.702	-0.5399	Yes
158	HIVEP3	3990551	16090	-0.720	-0.5369	Yes
159	ZIC4	1500082	16172	-0.777	-0.5363	Yes
160	PANK1	670091 6220605	16250	-0.843	-0.5351	Yes
161	BRUNOL4	4490452 5080451	16298	-0.875	-0.5321	Yes
162	RKHD1	6860577	16370	-0.920	-0.5301	Yes
163	TOP1	770471 4060632 6650324	16388	-0.933	-0.5250	Yes
164	HBP1	2510102 3130010 4210619	16493	-0.998	-0.5243	Yes
165	CREM	840156 6380438 6660041 6660168	16502	-1.000	-0.5184	Yes
166	ARHGEF2	3360577	16580	-1.046	-0.5159	Yes
167	MAP4K3	5390551	16648	-1.104	-0.5125	Yes
168	MAP2K5	2030440	16809	-1.262	-0.5131	Yes
169	PTEN	3390064	16842	-1.294	-0.5066	Yes
170	SOX4	2260091	16991	-1.439	-0.5054	Yes
171	HNRPA0	2680048	17077	-1.543	-0.5002	Yes
172	BCL9L	6940053	17177	-1.682	-0.4948	Yes
173	RHOA	580142 5900131 5340450	17225	-1.731	-0.4863	Yes
174	ADD3	4150739 5390600	17272	-1.798	-0.4773	Yes
175	WDR23	2030372	17534	-2.184	-0.4775	Yes
176	PREP	6220292	17675	-2.431	-0.4696	Yes
177	POLH	2690528	17790	-2.671	-0.4587	Yes
178	IRF2BP1	3170019	18010	-3.221	-0.4500	Yes
179	HOXA7	5910152	18035	-3.305	-0.4302	Yes
180	TCTA	2680687	18070	-3.421	-0.4102	Yes
181	GABARAP	1450286	18089	-3.487	-0.3890	Yes
182	BRD2	1450300 5340484 6100605	18221	-3.988	-0.3706	Yes
183	GADD45A	2900717	18311	-4.505	-0.3467	Yes
184	MAP3K3	610685	18320	-4.550	-0.3180	Yes
185	AGPAT4	6040079	18321	-4.555	-0.2889	Yes
186	BCL6	940100	18378	-4.903	-0.2607	Yes
187	EVA1	5690538	18424	-5.274	-0.2294	Yes
188	HSD11B1	450066 5550408	18499	-6.067	-0.1947	Yes
189	MAP4K2	4200037	18533	-6.506	-0.1549	Yes
190	CCR7	2060687	18569	-7.207	-0.1108	Yes
191	IL16	3850168	18595	-8.481	-0.0580	Yes
192	BTG1	4200735 6040131 6200133	18611	-9.256	0.0003	Yes