Details for gene set V$ARNT

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	V$ARNT_01
Enrichment Score (ES)	0.4579964
Normalized Enrichment Score (NES)	1.2677191
Nominal p-value	0.028888889
FDR q-value	0.8302674
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	VARS2	1410017 3800114 4210270	38	6.639	0.0314	Yes
2	SNX8	3450315	65	5.832	0.0594	Yes
3	IFRD2	4150110	77	5.595	0.0870	Yes
4	SHMT1	5900132	112	5.195	0.1114	Yes
5	EIF4B	5390563 5270577	144	4.909	0.1344	Yes
6	AATF	5220575	212	4.422	0.1531	Yes
7	SLC39A11	5860687	233	4.315	0.1738	Yes
8	NUDC	4780025	234	4.307	0.1955	Yes
9	QTRT1	1340162	242	4.267	0.2166	Yes
10	PPAT	1980019	255	4.206	0.2372	Yes
11	DDX3X	2190020	355	3.736	0.2506	Yes
12	VPS16	430064 3390041 6860301	448	3.424	0.2629	Yes
13	AKAP12	1450739	474	3.321	0.2783	Yes
14	PSME3	2810537	487	3.284	0.2942	Yes
15	CLN3	780368	562	3.127	0.3060	Yes
16	HNRPA1	4670398 5050687	565	3.124	0.3216	Yes
17	PAICS	610142	608	3.017	0.3345	Yes
18	EIF2C2	770451	614	3.009	0.3494	Yes
19	NR1D1	2360471 770746 6590204	825	2.570	0.3510	Yes
20	CCAR1	3190092	832	2.558	0.3636	Yes
21	UBE4B	780008 3610154	870	2.501	0.3742	Yes
22	PER1	3290315	1057	2.234	0.3754	Yes
23	HOXB4	540131	1086	2.203	0.3849	Yes
24	COMMD3	2510259	1097	2.185	0.3954	Yes
25	OPRS1	6130128 6290717	1219	2.040	0.3991	Yes
26	PPRC1	1740441	1228	2.028	0.4089	Yes
27	PPP1R1B	5290403 5550324	1229	2.027	0.4192	Yes
28	STMN1	1990717	1415	1.783	0.4181	Yes
29	HMGN2	3140091	1422	1.774	0.4267	Yes
30	ATP6V1C1	2690324 5220528	1548	1.632	0.4282	Yes
31	CD164	3830594	1626	1.561	0.4319	Yes
32	COPS7A	3940458 7000022	1641	1.544	0.4389	Yes
33	BOK	1170373 5860446	1679	1.519	0.4445	Yes
34	RHEBL1	2810576	1695	1.504	0.4513	Yes
35	PRPS1	6350129	1749	1.447	0.4557	Yes
36	UBXD1	5130079 5390167	1836	1.373	0.4580	Yes
37	PLCG2	5720008	2048	1.183	0.4525	No
38	MBNL1	2640762 7100048	2223	1.036	0.4483	No
39	HSPD1	60097 2030451	2231	1.033	0.4531	No
40	HIRA	4480609 5270167	2257	1.025	0.4569	No
41	RTN4	50725 630647 870097 870184	2392	0.973	0.4546	No
42	ZCCHC7	6510592	2450	0.942	0.4562	No
43	UBXD3	5050193	2554	0.873	0.4551	No
44	ATP6V1A	6590242	3053	0.596	0.4311	No
45	RAB3IL1	380685 5420176	3220	0.517	0.4247	No
46	MYST3	5270500	3239	0.510	0.4263	No
47	CRY2	6290722	3290	0.491	0.4260	No
48	UTX	2900017 6770452	3292	0.490	0.4284	No
49	PTMA	5570148	3374	0.457	0.4264	No
50	RBBP6	2320129	3493	0.418	0.4221	No
51	RPL13A	2680519 5700142	3504	0.415	0.4236	No
52	SNX2	2470068 3360364 6510064	3659	0.364	0.4171	No
53	LTBR	2450341	3717	0.346	0.4158	No
54	AMPD2	630093 1170070	3718	0.346	0.4175	No
55	TCERG1	2350551 4540397 5220746	3721	0.345	0.4191	No
56	SYT3	6380017	3732	0.342	0.4203	No
57	GTF2H1	2570746 2650148	3831	0.315	0.4166	No
58	CNNM1	2190433	3842	0.312	0.4176	No
59	ATP6V0B	2810112	3927	0.292	0.4145	No
60	ALDH6A1	1770746	4033	0.270	0.4102	No
61	SIRT1	1190731	4232	0.232	0.4006	No
62	NR5A1	70707	4347	0.214	0.3955	No
63	DSCAM	1780050 2450731 2810438	4362	0.212	0.3958	No
64	PPP1R3C	2640170	4739	0.160	0.3763	No
65	SNAP25	360520	4856	0.149	0.3707	No
66	ETV1	70735 2940603 5080463	4979	0.138	0.3648	No
67	SYNCRIP	1690195 3140113 4670279	5008	0.136	0.3640	No
68	ARRDC3	4610390	5168	0.122	0.3560	No
69	NEUROG2	5420278	5280	0.114	0.3505	No
70	HOXA1	1190524 5420142	5575	0.097	0.3351	No
71	PICALM	1940280	5577	0.097	0.3355	No
72	NEUROD2	5290097	5821	0.086	0.3228	No
73	JPH1	610739	6264	0.069	0.2991	No
74	POGK	5290315	6276	0.069	0.2989	No
75	MRPL40	2370215	6304	0.068	0.2978	No
76	TCEAL1	870577	6932	0.049	0.2640	No
77	EIF3S10	1190079 3840176	6952	0.049	0.2632	No
78	SYT6	2510280 3850128 4540064	6994	0.048	0.2612	No
79	NKX2-2	4150731	7312	0.042	0.2443	No
80	AKAP10	2630504 5910577	7313	0.042	0.2445	No
81	DNMT3A	4050068 4810717	7333	0.041	0.2437	No
82	SLC38A5	540093	7809	0.032	0.2181	No
83	XPO1	540707	7976	0.029	0.2092	No
84	DNAJB9	460114	8175	0.025	0.1986	No
85	ZBTB10	4200132	8183	0.025	0.1983	No
86	FOXD3	6550156	8196	0.025	0.1978	No
87	VLDLR	870722 3060047 5340452 6550131	8322	0.023	0.1911	No
88	PCDHA10	3830725	8382	0.022	0.1881	No
89	NPTX1	3710736	8391	0.022	0.1877	No
90	SNX5	1570021 6860609	8484	0.020	0.1828	No
91	BMP2K	60541 5570504	8689	0.017	0.1719	No
92	HOXD10	6100039	8735	0.016	0.1695	No
93	TBC1D15	870673	8853	0.014	0.1632	No
94	ARMET	5130670	9005	0.012	0.1551	No
95	FOXF2	1240091	9091	0.011	0.1506	No
96	TRPM7	2510408	9110	0.010	0.1496	No
97	AP1S2	780279 4280707	9238	0.008	0.1428	No
98	TBC1D5	5360619 6130603	9296	0.008	0.1397	No
99	NPM1	4730427	9337	0.007	0.1376	No
100	PHC3	4920332	9437	0.006	0.1323	No
101	ODC1	5670168	9621	0.003	0.1224	No
102	FLT3	2640487	9828	-0.000	0.1112	No
103	ABCA1	6290156	9882	-0.001	0.1083	No
104	HOXA11	6980133	9947	-0.002	0.1049	No
105	BHLHB3	3450438	10003	-0.003	0.1019	No
106	TIMM9	2450484	10266	-0.007	0.0877	No
107	ADAMTS19	2680739	10280	-0.007	0.0871	No
108	PAX6	1190025	10551	-0.011	0.0725	No
109	BMP4	380113	11090	-0.020	0.0434	No
110	NEUROD1	3060619	11111	-0.021	0.0424	No
111	TESK2	6520524	11382	-0.026	0.0279	No
112	SLCO1C1	5390494	11473	-0.027	0.0232	No
113	FGF14	2630390 3520075 6770048	11483	-0.027	0.0228	No
114	TGFB2	4920292	11759	-0.033	0.0081	No
115	BDNF	2940128 3520368	11802	-0.034	0.0060	No
116	RCL1	1980408 2680008 3800176	11846	-0.035	0.0038	No
117	RNF128	1230300 5670273	12190	-0.043	-0.0146	No
118	JAG1	3440390	12194	-0.043	-0.0145	No
119	CELSR3	5270731 7100082	12409	-0.048	-0.0259	No
120	HOXB5	2900538	12623	-0.054	-0.0372	No
121	GATA5	430465	13147	-0.071	-0.0652	No
122	GATA4	1410215 2690609	13425	-0.083	-0.0798	No
123	CBX5	3830072 6290167	13495	-0.086	-0.0831	No
124	TAC1	7000195 380706	13761	-0.102	-0.0969	No
125	ELAVL3	2850014	13765	-0.102	-0.0966	No
126	UBE2B	4780497	13803	-0.105	-0.0980	No
127	NRIP3	1340372	14161	-0.134	-0.1167	No
128	ETV4	2450605	14172	-0.135	-0.1166	No
129	SLC35A5	2970670 4480546	14207	-0.138	-0.1177	No
130	DUSP7	2940309	14406	-0.157	-0.1277	No
131	LAMP1	2470524	14522	-0.170	-0.1331	No
132	MTUS1	780348 4920609	14828	-0.223	-0.1485	No
133	HPS3	6650348	14884	-0.234	-0.1503	No
134	ILF3	940722 3190647 6520110	15016	-0.268	-0.1560	No
135	HOXB7	4540706 4610358	15205	-0.323	-0.1646	No
136	ARF6	3520026	15246	-0.339	-0.1651	No
137	CBARA1	360471	15271	-0.349	-0.1646	No
138	DVL2	6110162	15325	-0.365	-0.1656	No
139	EIF4E	1580403 70133 6380215	15331	-0.366	-0.1641	No
140	NDUFA7	5900722	15414	-0.396	-0.1665	No
141	EGLN2	540086	15438	-0.407	-0.1657	No
142	MTCH2	3780603 6620215	15458	-0.418	-0.1646	No
143	IL15RA	2570270 3190711 6100091 6100270	15505	-0.435	-0.1649	No
144	DCTN4	3390010 5550170	15512	-0.437	-0.1630	No
145	PAK2	360438 7050068	15518	-0.438	-0.1611	No
146	B3GALT6	50195	15535	-0.447	-0.1597	No
147	STX6	4850750 6770278	15661	-0.501	-0.1640	No
148	MNT	4920575	15674	-0.510	-0.1621	No
149	ARMCX3	3290309	15827	-0.580	-0.1674	No
150	PDGFB	3060440 6370008	15889	-0.613	-0.1676	No
151	SMYD4	2640403	16128	-0.751	-0.1767	No
152	CSRP2BP	4570717 5550333	16197	-0.791	-0.1764	No
153	PABPN1	460519	16210	-0.806	-0.1730	No
154	SCYL1	5050717	16346	-0.908	-0.1757	No
155	UBE1	4150139 7050463	16518	-1.011	-0.1799	No
156	RPA1	360452	16553	-1.031	-0.1766	No
157	EPC1	1570050 5290095 6900193	16571	-1.040	-0.1722	No
158	CHD4	5420059 6130338 6380717	16744	-1.194	-0.1755	No
159	ESRRA	6550242	16823	-1.271	-0.1734	No
160	COMMD8	5890358	16835	-1.285	-0.1675	No
161	ATF7IP	2690176 6770021	16981	-1.427	-0.1681	No
162	TEF	1050050 3120397 4060487	17205	-1.711	-0.1716	No
163	MAP2K6	1230056 2940204	17557	-2.234	-0.1794	No
164	LEF1	2470082 7100288	17571	-2.264	-0.1687	No
165	LZTS2	2260440	17810	-2.702	-0.1680	No
166	AP1GBP1	2510372	17816	-2.729	-0.1545	No
167	KBTBD2	2320014	17988	-3.150	-0.1479	No
168	HOXA7	5910152	18035	-3.305	-0.1337	No
169	FXYD6	3870164	18111	-3.565	-0.1198	No
170	BRD2	1450300 5340484 6100605	18221	-3.988	-0.1056	No
171	NIT1	1230338 3940671	18256	-4.174	-0.0864	No
172	BCL11B	2680673	18265	-4.208	-0.0656	No
173	RNF44	5910692	18353	-4.723	-0.0465	No
174	ZFYVE26	6860152	18368	-4.851	-0.0228	No
175	ISGF3G	3190131 7100142	18568	-7.181	0.0026	No