Details for gene set TTGCACT,MIR-130A,MIR-301,MIR-130B[GSEA]

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	TTGCACT,MIR-130A,MIR-301,MIR-130B
Enrichment Score (ES)	-0.5515794
Normalized Enrichment Score (NES)	-1.5604222
Nominal p-value	0.0
FDR q-value	0.21538074
FWER p-Value	0.509

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SKP1A	2450102	377	3.660	-0.0014	No
2	CHST1	50601	681	2.863	-0.0030	No
3	RAB34	770411	713	2.790	0.0098	No
4	YTHDF2	4060332 4610279	903	2.445	0.0123	No
5	INHBB	2680092	1032	2.255	0.0171	No
6	ABCB7	4150324	1335	1.898	0.0105	No
7	SMOC2	1170170	1539	1.637	0.0080	No
8	CUL3	1850520	1696	1.504	0.0074	No
9	SFMBT1	2360450 2370070	1736	1.458	0.0129	No
10	RASSF1	2760364 4850725	2065	1.165	0.0011	No
11	TRPS1	870100	2081	1.158	0.0063	No
12	CYLD	6590079	2137	1.107	0.0091	No
13	MBNL1	2640762 7100048	2223	1.036	0.0098	No
14	SLMAP	3120093 4760128 5390528	2280	1.015	0.0121	No
15	FASTK	2690053 4280288 4610551 6370292	2292	1.011	0.0168	No
16	TGFBR2	1780711 1980537 6550398	2353	0.994	0.0187	No
17	GJA1	5220731	2415	0.961	0.0204	No
18	MIB1	3800537	2428	0.956	0.0247	No
19	SPG20	3360202	2520	0.891	0.0244	No
20	TPP1	3990446	2532	0.882	0.0284	No
21	BLCAP	3990253	2620	0.829	0.0280	No
22	TTYH3	2100082	2832	0.707	0.0202	No
23	UBE2D2	4590671 6510446	2866	0.686	0.0219	No
24	HABP4	840487	3007	0.617	0.0175	No
25	STC1	360161	3066	0.591	0.0175	No
26	LRP4	1740253	3241	0.510	0.0106	No
27	TMEM32	1170452	3298	0.488	0.0101	No
28	ACSL1	2900520	3394	0.450	0.0073	No
29	NME7	60170 1230551 2850333 4200102 4560411 5090647	3451	0.432	0.0065	No
30	CLTC	6590458	3529	0.408	0.0044	No
31	CSF1	3120400	3652	0.366	-0.0003	No
32	SNX2	2470068 3360364 6510064	3659	0.364	0.0013	No
33	RAP2C	1690132	3675	0.360	0.0023	No
34	ARID4B	730754 6660026	3702	0.351	0.0028	No
35	SOX21	1050110 4670041 6660338	3725	0.344	0.0034	No
36	PDGFRA	2940332	3734	0.341	0.0047	No
37	EPC2	2470095	3756	0.332	0.0053	No
38	MID1IP1	2570739	3847	0.310	0.0020	No
39	ACVR1	6840671	3891	0.301	0.0012	No
40	SH3D19	6020520	3912	0.297	0.0017	No
41	PPARG	1990168 2680603 6130632	3929	0.291	0.0023	No
42	CD69	380167 4730088	4039	0.269	-0.0022	No
43	PRKD3	5220520 5890519	4067	0.261	-0.0023	No
44	RHOT1	6760692	4145	0.246	-0.0052	No
45	CANX	4760402	4161	0.244	-0.0048	No
46	EDA	6420441	4172	0.242	-0.0040	No
47	SMAD5	5700497	4176	0.241	-0.0029	No
48	SNPH	2680484	4187	0.239	-0.0022	No
49	ARFIP1	3130601	4334	0.216	-0.0091	No
50	ROBO2	450136	4352	0.214	-0.0089	No
51	PTPRM	6370136	4382	0.207	-0.0094	No
52	RUNX3	3800546	4582	0.179	-0.0193	No
53	KIT	7040095	4599	0.177	-0.0192	No
54	ESR1	4060372 5860193	4607	0.176	-0.0187	No
55	HOXA3	3610632 6020358	4695	0.166	-0.0226	No
56	ZFYVE9	6980288 7100017	4706	0.164	-0.0223	No
57	PRKAA1	510156	4724	0.162	-0.0223	No
58	SNAP25	360520	4856	0.149	-0.0287	No
59	RASD1	2450463	5000	0.136	-0.0358	No
60	FBXO28	1340358 4730100	5030	0.134	-0.0367	No
61	ARRDC3	4610390	5168	0.122	-0.0435	No
62	RTN1	4150452 4850176	5323	0.112	-0.0513	No
63	SASH1	4070270	5324	0.112	-0.0507	No
64	NR3C2	2480324 6400093	5354	0.110	-0.0517	No
65	ACSL4	510020 1240041 3190050 4540500 5570463	5453	0.104	-0.0565	No
66	ASXL2	130670	5625	0.095	-0.0653	No
67	ZCCHC14	5900288	5794	0.087	-0.0740	No
68	ARHGAP12	1050181	5811	0.086	-0.0745	No
69	STARD13	540722	5827	0.085	-0.0748	No
70	FSTL5	770280	5898	0.083	-0.0782	No
71	ZFPM2	460072	5936	0.081	-0.0798	No
72	SOCS5	3830398 7100093	5957	0.080	-0.0805	No
73	PTP4A1	130692	6107	0.075	-0.0882	No
74	PLAA	60706 6370369	6179	0.072	-0.0917	No
75	HIVEP2	6520538	6200	0.071	-0.0924	No
76	MAPRE3	7050504	6225	0.071	-0.0934	No
77	QKI	5220093 6130044	6268	0.069	-0.0953	No
78	MLLT6	3870168	6273	0.069	-0.0951	No
79	MAP3K9	3290707	6532	0.061	-0.1089	No
80	USP33	780047	6549	0.060	-0.1094	No
81	AKAP7	4610044	6690	0.056	-0.1168	No
82	WDFY3	3610041 4560333 4570273	6835	0.052	-0.1243	No
83	BIRC6	70148	6912	0.050	-0.1282	No
84	PLCB1	2570050 7100102	6935	0.049	-0.1292	No
85	ZBTB4	6450441	6970	0.048	-0.1308	No
86	DLL1	1770377	7006	0.048	-0.1324	No
87	SULF1	430575	7127	0.045	-0.1387	No
88	SOCS6	1170347 7100280	7405	0.040	-0.1536	No
89	AKAP1	110148 1740735 2260019 7000563	7510	0.038	-0.1591	No
90	RUNX2	1400193 4230215	7613	0.036	-0.1644	No
91	WEE1	3390070	7693	0.034	-0.1686	No
92	ATRX	2340039 3610132 4210373	7958	0.029	-0.1828	No
93	ERBB2IP	580253 1090672	7997	0.028	-0.1847	No
94	PTGFRN	4120524	8218	0.024	-0.1966	No
95	M6PR	2480458 3290593 3840324	8234	0.024	-0.1973	No
96	MAMDC1	3710129 4480075	8248	0.024	-0.1979	No
97	EMX2	1660092	8389	0.022	-0.2054	No
98	NPTX1	3710736	8391	0.022	-0.2053	No
99	GAP43	3130504	8422	0.021	-0.2068	No
100	RAPGEF4	6100563	8470	0.021	-0.2093	No
101	SNX5	1570021 6860609	8484	0.020	-0.2099	No
102	CALM2	6620463	8531	0.020	-0.2123	No
103	SLC24A3	5080707	8571	0.019	-0.2143	No
104	LRCH2	2900162	8603	0.019	-0.2159	No
105	ARHGEF12	3990195	8866	0.014	-0.2301	No
106	EDG1	4200619	8896	0.014	-0.2316	No
107	LDLR	5670386	8927	0.013	-0.2332	No
108	WNT1	4780148	8973	0.012	-0.2356	No
109	FOXF2	1240091	9091	0.011	-0.2419	No
110	BTBD7	730288	9130	0.010	-0.2439	No
111	CNOT7	2450338 5720397	9289	0.008	-0.2525	No
112	NHLH2	6200021	9444	0.006	-0.2608	No
113	ADCY2	4610100	9446	0.005	-0.2609	No
114	UBE2D1	1850400	9491	0.005	-0.2632	No
115	EXOC5	7000711	9493	0.005	-0.2633	No
116	ARHGAP21	2100168	9558	0.004	-0.2667	No
117	MAP3K12	2470373 6420162	9831	-0.000	-0.2815	No
118	ST8SIA3	6940427	9878	-0.001	-0.2840	No
119	ABCA1	6290156	9882	-0.001	-0.2842	No
120	HOXB3	520292	9890	-0.001	-0.2846	No
121	NRP2	4070400 5860041 6650446	9923	-0.002	-0.2863	No
122	UCP3	4200128 4210148	9928	-0.002	-0.2865	No
123	GDA	3290435	9948	-0.002	-0.2875	No
124	FMR1	5050075	9997	-0.003	-0.2901	No
125	BHLHB3	3450438	10003	-0.003	-0.2904	No
126	SHANK2	1500452	10060	-0.004	-0.2934	No
127	CLCN5	4200390	10278	-0.007	-0.3052	No
128	ABHD3	2370091	10320	-0.008	-0.3074	No
129	NPAT	3800594 4670026	10415	-0.009	-0.3125	No
130	MYT1	6770524	10451	-0.010	-0.3143	No
131	PTPRG	2650524 1340022	10605	-0.012	-0.3226	No
132	TRIM2	430546 1170286	10607	-0.012	-0.3226	No
133	ROBO1	3710398	10715	-0.014	-0.3283	No
134	ERBB4	4610400 4810017	10737	-0.014	-0.3294	No
135	R3HDM1	940685 3290161	10804	-0.015	-0.3329	No
136	EIF2C1	6900551	10860	-0.016	-0.3358	No
137	ATP11A	1240717 5570603	10952	-0.018	-0.3407	No
138	TSC1	1850672	10977	-0.018	-0.3419	No
139	MEOX2	6400288	11077	-0.020	-0.3472	No
140	NEUROD1	3060619	11111	-0.021	-0.3489	No
141	EFNB2	5340136	11175	-0.022	-0.3522	No
142	POU3F2	6620484	11229	-0.023	-0.3550	No
143	TAF4	1450170	11337	-0.025	-0.3607	No
144	POU4F1	2260315	11343	-0.025	-0.3608	No
145	TESK2	6520524	11382	-0.026	-0.3628	No
146	MAT2B	1690139 2510706	11385	-0.026	-0.3627	No
147	B4GALT5	1230692	11426	-0.026	-0.3648	No
148	RAI2	6770333	11602	-0.030	-0.3742	No
149	RXRA	3800471	11625	-0.030	-0.3752	No
150	GRM7	4230110	11800	-0.034	-0.3845	No
151	RAB5A	6520324	11810	-0.034	-0.3848	No
152	PGM2L1	2350035	11872	-0.035	-0.3880	No
153	SCRT1	6760736	11961	-0.037	-0.3926	No
154	ATP2B2	3780397	12068	-0.040	-0.3981	No
155	DOCK3	3290273 3360497 2850068	12077	-0.040	-0.3983	No
156	ST18	5720537	12159	-0.042	-0.4025	No
157	NRBF2	6110672	12350	-0.047	-0.4126	No
158	MAFB	1230471	12506	-0.050	-0.4208	No
159	PHACTR2	1580154	12564	-0.052	-0.4237	No
160	TRIM3	5570156	12632	-0.054	-0.4270	No
161	CREB5	2320368	12691	-0.056	-0.4299	No
162	WDR20	1240373	12874	-0.061	-0.4395	No
163	BMPR2	5340066 6960328	13071	-0.068	-0.4498	No
164	EREG	50519 4920129	13211	-0.074	-0.4570	No
165	HOXA5	6840026	13254	-0.075	-0.4589	No
166	SOX5	2370576 2900167 3190128 5050528	13267	-0.076	-0.4592	No
167	CSMD1	1780672	13333	-0.079	-0.4623	No
168	ADAMTS18	5690008	13366	-0.080	-0.4636	No
169	WNK3	4060053	13451	-0.084	-0.4678	No
170	ABCC5	2100600 5050692	13567	-0.091	-0.4735	No
171	SLC9A2	4920022 5910133	13579	-0.092	-0.4737	No
172	BTBD3	1980041 2510577 3190053 4200746	13848	-0.109	-0.4877	No
173	NPNT	130301	13851	-0.109	-0.4872	No
174	COL19A1	6220441	13945	-0.116	-0.4917	No
175	ATRN	870735 3360390	13961	-0.117	-0.4919	No
176	TARDBP	870390 2350093	13980	-0.119	-0.4923	No
177	PAFAH1B1	4230333 6420121 6450066	14030	-0.123	-0.4943	No
178	LNPEP	1170092 1940093 3120025	14116	-0.130	-0.4982	No
179	ADAM12	3390132 4070347	14120	-0.130	-0.4977	No
180	DCBLD2	5890333	14122	-0.130	-0.4971	No
181	NIPA1	380600	14197	-0.137	-0.5004	No
182	LRP8	3610746 5360035	14209	-0.138	-0.5003	No
183	ZNF3	1770193 2320047 2570273	14244	-0.142	-0.5014	No
184	WNT2B	3130088 5960575	14408	-0.157	-0.5095	No
185	TBC1D8	2340253	14558	-0.174	-0.5167	No
186	DPYSL2	2100427 3130112 5700324	14617	-0.185	-0.5189	No
187	TMEPAI	1340253	14630	-0.188	-0.5186	No
188	EIF2C4	2940577 5900563	14646	-0.190	-0.5184	No
189	ARHGAP1	2810010 5270064	14656	-0.191	-0.5179	No
190	CSNK1G1	840082 1230575 3940647	14756	-0.208	-0.5222	No
191	CNOT4	2320242 6760706	14787	-0.215	-0.5227	No
192	CHD9	430037 2570129 5420398	15065	-0.282	-0.5363	No
193	TNRC6A	1240537 6130037 6200010	15066	-0.282	-0.5348	No
194	SNF1LK	6110403	15311	-0.360	-0.5463	No
195	SPATA2	1230215 5910541	15393	-0.389	-0.5486	No
196	MLLT10	1410288 3290142	15442	-0.409	-0.5491	Yes
197	VGLL4	6860463	15462	-0.419	-0.5480	Yes
198	PIGA	1940435 5290692	15507	-0.436	-0.5481	Yes
199	SUV39H1	630112	15542	-0.450	-0.5476	Yes
200	PAPD4	1580673 730605 5270112	15616	-0.479	-0.5491	Yes
201	CLOCK	1410070 2940292 3390075	15618	-0.480	-0.5466	Yes
202	DICER1	540286	15633	-0.490	-0.5448	Yes
203	TIMP2	4780609	15643	-0.495	-0.5427	Yes
204	NEUROG1	380341	15656	-0.499	-0.5408	Yes
205	STX6	4850750 6770278	15661	-0.501	-0.5384	Yes
206	E2F7	4200056	15794	-0.566	-0.5426	Yes
207	MTF1	520427 2340364	15810	-0.575	-0.5405	Yes
208	RNF38	1940746 3140133 3840601	15863	-0.599	-0.5402	Yes
209	BRWD1	3130048 3140168 6400601	15993	-0.671	-0.5437	Yes
210	USP48	2480010	16040	-0.692	-0.5426	Yes
211	ACBD5	3440397 6020600	16053	-0.698	-0.5396	Yes
212	AP1G1	2360671	16207	-0.803	-0.5438	Yes
213	CCRN4L	50438 5130372	16326	-0.895	-0.5455	Yes
214	RKHD1	6860577	16370	-0.920	-0.5431	Yes
215	RAB5B	130397 1980273 6900731	16415	-0.947	-0.5405	Yes
216	SPHK2	2030487 4120670 4850114	16453	-0.979	-0.5374	Yes
217	HBP1	2510102 3130010 4210619	16493	-0.998	-0.5343	Yes
218	ATXN1	5550156	16523	-1.014	-0.5306	Yes
219	RALBP1	4780632	16595	-1.057	-0.5290	Yes
220	SNIP1	5360092	16618	-1.079	-0.5245	Yes
221	MYB	1660494 5860451 6130706	16653	-1.109	-0.5206	Yes
222	BZRAP1	5290487	16740	-1.188	-0.5191	Yes
223	ITPR1	3450519	16788	-1.247	-0.5152	Yes
224	SMARCD2	3830619	16828	-1.279	-0.5106	Yes
225	ULK2	50041 5050176	16859	-1.314	-0.5054	Yes
226	DNM2	50176 3170279	16937	-1.388	-0.5023	Yes
227	OGT	2360131 4610333	16965	-1.415	-0.4964	Yes
228	SOX4	2260091	16991	-1.439	-0.4903	Yes
229	MTMR12	7000181	17152	-1.644	-0.4904	Yes
230	IRF1	2340152 3450592 6290121 6980577	17156	-1.653	-0.4820	Yes
231	CNIH	2190484 5080609	17207	-1.714	-0.4758	Yes
232	ELK3	460377 1400762 3710497	17230	-1.736	-0.4679	Yes
233	PFKFB3	630706	17238	-1.747	-0.4592	Yes
234	VPS24	3120687	17241	-1.755	-0.4501	Yes
235	ITPK1	3360056	17264	-1.791	-0.4420	Yes
236	DDX6	2630025 6770408	17277	-1.800	-0.4332	Yes
237	EPS15	4200215	17325	-1.854	-0.4261	Yes
238	MECP2	1940450	17335	-1.863	-0.4169	Yes
239	MAP3K14	5890435	17399	-1.981	-0.4100	Yes
240	HECA	3310612	17476	-2.101	-0.4032	Yes
241	ENPP5	1780338	17501	-2.127	-0.3934	Yes
242	PELI1	3870215 6900040	17530	-2.172	-0.3836	Yes
243	NCOA1	3610438	17615	-2.336	-0.3760	Yes
244	ATG16L1	5390292	17630	-2.357	-0.3644	Yes
245	PHF12	870400 3130687	17759	-2.611	-0.3578	Yes
246	HRB	1660397 6110398	17770	-2.632	-0.3446	Yes
247	BAZ2A	730184	17950	-3.032	-0.3385	Yes
248	NDEL1	2370465	17955	-3.042	-0.3229	Yes
249	BACH2	6760131	18198	-3.889	-0.3158	Yes
250	ATP6V1B2	4060528	18205	-3.925	-0.2956	Yes
251	PITPNM2	1580044	18228	-4.019	-0.2759	Yes
252	SPEN	2060041	18308	-4.501	-0.2567	Yes
253	GADD45A	2900717	18311	-4.505	-0.2333	Yes
254	WDR1	1090129 3990121	18315	-4.519	-0.2099	Yes
255	PSAP	2810338	18336	-4.615	-0.1869	Yes
256	ZFYVE26	6860152	18368	-4.851	-0.1633	Yes
257	KLF13	4670563	18431	-5.352	-0.1388	Yes
258	MAML1	2760008	18432	-5.364	-0.1108	Yes
259	LRIG1	1050136	18442	-5.435	-0.0829	Yes
260	SMOC1	840039	18592	-8.434	-0.0470	Yes
261	BTG1	4200735 6040131 6200133	18611	-9.256	0.0003	Yes