Details for gene set STEMCELL_COMMON

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	STEMCELL_COMMON_UP
Enrichment Score (ES)	0.60821563
Normalized Enrichment Score (NES)	1.6669925
Nominal p-value	0.0
FDR q-value	0.038333904
FWER p-Value	0.518

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TBRG4	3610239 6370594	61	5.934	0.0327	Yes
2	MKI67IP	3060132	82	5.493	0.0649	Yes
3	CRTAP	3990725	90	5.425	0.0974	Yes
4	CIRH1A	2340372	140	4.940	0.1247	Yes
5	CAD	2340717	214	4.419	0.1476	Yes
6	GRWD1	6350528	216	4.407	0.1743	Yes
7	GNL2	6620022	244	4.263	0.1987	Yes
8	RYK	1500338 1770072	278	4.106	0.2218	Yes
9	MRPL3	1170736 5270025	290	4.043	0.2457	Yes
10	FKBP11	3170575	330	3.855	0.2670	Yes
11	DDX1	3450047	366	3.693	0.2875	Yes
12	GARS	1230601	425	3.520	0.3057	Yes
13	RPP14	7040014	478	3.316	0.3230	Yes
14	XPOT	7050184	552	3.140	0.3381	Yes
15	WBP5	7050563	623	2.978	0.3523	Yes
16	RPL22	4070070	626	2.971	0.3703	Yes
17	NDUFAF1	130113	650	2.904	0.3866	Yes
18	GCAT	5270672	656	2.893	0.4039	Yes
19	MPDU1	1850091	685	2.854	0.4197	Yes
20	SFRS6	60224	743	2.731	0.4332	Yes
21	COPS4	4230497 6940324	753	2.718	0.4492	Yes
22	PDCD2	6520717	824	2.575	0.4610	Yes
23	CBR3	6590148	942	2.385	0.4691	Yes
24	MRPS10	2060315 4880300 6040047	1060	2.230	0.4763	Yes
25	PSMD12	730044	1154	2.117	0.4841	Yes
26	TPP2	3850093	1198	2.063	0.4943	Yes
27	UMPS	2340541 4730438	1214	2.044	0.5059	Yes
28	YWHAB	1740176	1215	2.043	0.5183	Yes
29	CDKN1A	4050088 6400706	1270	1.970	0.5273	Yes
30	MRPL17	4120148	1289	1.956	0.5382	Yes
31	USP10	2030736 2450333	1336	1.897	0.5472	Yes
32	PRPSAP1	6980494	1366	1.853	0.5569	Yes
33	GSTA4	1660369	1437	1.752	0.5637	Yes
34	MRPL34	3520605	1475	1.715	0.5721	Yes
35	COPS7A	3940458 7000022	1641	1.544	0.5725	Yes
36	LAPTM4A	450092	1672	1.527	0.5802	Yes
37	SMARCAD1	5390619	1756	1.440	0.5844	Yes
38	PHTF2	6590053	1898	1.312	0.5847	Yes
39	ITGB1	5080156 6270528	1985	1.231	0.5876	Yes
40	ELOVL6	5340746	1989	1.229	0.5948	Yes
41	RRN3	5550138	2098	1.145	0.5959	Yes
42	SUCLG2	5340397 5700270	2178	1.075	0.5982	Yes
43	MRPS31	130411 1980348 4780138	2316	1.001	0.5968	Yes
44	SLC38A2	1470242 3800026	2363	0.989	0.6003	Yes
45	SFRS3	770315 4230593	2473	0.924	0.6000	Yes
46	ZMAT3	450170	2710	0.771	0.5919	Yes
47	KCNAB3	2470725	2773	0.733	0.5930	Yes
48	UBE2D2	4590671 6510446	2866	0.686	0.5922	Yes
49	PPP1R2	3710278 1400725	2881	0.680	0.5956	Yes
50	ARCN1	5820273	2941	0.653	0.5963	Yes
51	DTYMK	2340377	2944	0.651	0.6002	Yes
52	TXNRD1	6590446	2990	0.624	0.6015	Yes
53	CPXM1	5390725	3019	0.611	0.6037	Yes
54	MRPS2	5860725	3021	0.610	0.6074	Yes
55	PLA2G6	6040161	3072	0.586	0.6082	Yes
56	ADAM9	3360411	3222	0.517	0.6033	No
57	EIF4G2	3800575 6860184	3224	0.516	0.6064	No
58	SMAD1	630537 1850333	3330	0.476	0.6036	No
59	KLHL7	6350154	3487	0.420	0.5977	No
60	SLC4A7	2370056	3517	0.412	0.5986	No
61	CTBP2	430309 3710079	3520	0.412	0.6010	No
62	FBXO8	460600 3610133	3551	0.396	0.6018	No
63	STRN3	1450093 6200685	3563	0.393	0.6035	No
64	RNF4	580286 1400152	3681	0.358	0.5994	No
65	RPS6KB1	1450427 5080110 6200563	3850	0.310	0.5922	No
66	SH3D19	6020520	3912	0.297	0.5907	No
67	MSH2	6180273	3919	0.295	0.5921	No
68	BLZF1	630088	4143	0.246	0.5816	No
69	ZFX	5900400	4162	0.244	0.5821	No
70	ANKRD17	2120402 3850035 6400044	4316	0.220	0.5751	No
71	NDUFAB1	1980091	4369	0.210	0.5736	No
72	USP9X	130435 2370735 3120338	4870	0.147	0.5474	No
73	ROCK2	1780035 5720025	5029	0.134	0.5397	No
74	TXNDC9	1580079	5123	0.127	0.5354	No
75	ALDH7A1	4050446	5284	0.114	0.5274	No
76	GAS2	1340082	5663	0.093	0.5075	No
77	KIF2A	3990286 6130575	5694	0.091	0.5065	No
78	GCLM	4230270	5722	0.090	0.5055	No
79	CTTN	780154 1690538 3310017 4060717	5901	0.083	0.4964	No
80	TEAD2	6450079	5968	0.080	0.4933	No
81	PKD2	4670390	6031	0.078	0.4904	No
82	MRPL45	5670142	6410	0.065	0.4704	No
83	EPRS	3170301	6554	0.060	0.4630	No
84	PCF11	1240180	6628	0.058	0.4594	No
85	PLS3	3290082	7053	0.046	0.4367	No
86	TXNL1	2850148	7103	0.046	0.4343	No
87	MPHOSPH10	6860114	7938	0.029	0.3894	No
88	XPO1	540707	7976	0.029	0.3875	No
89	STXBP3	780706	8354	0.022	0.3673	No
90	DNAJB6	2810309 5570451	8624	0.018	0.3528	No
91	TRIP6	6520609	8750	0.016	0.3462	No
92	TBC1D15	870673	8853	0.014	0.3407	No
93	YAP1	4230577	9060	0.011	0.3296	No
94	FKBP9	1400044	9070	0.011	0.3292	No
95	XRCC5	7100286	9129	0.010	0.3261	No
96	TOM1L1	4920056 3190070	9176	0.009	0.3237	No
97	RCN1	2480041	9587	0.004	0.3015	No
98	RAD23B	2190671	10154	-0.006	0.2709	No
99	PTPN2	130315	10194	-0.006	0.2689	No
100	RAB18	3120575 4590577	11361	-0.025	0.2059	No
101	WTAP	4010176	11762	-0.033	0.1845	No
102	RCL1	1980408 2680008 3800176	11846	-0.035	0.1802	No
103	LAPTM4B	2060377 4150398	12233	-0.044	0.1595	No
104	YES1	6100050	12333	-0.046	0.1545	No
105	YWHAH	1660133 2810053	12447	-0.049	0.1486	No
106	EIF3S1	6130368 6770044	12508	-0.050	0.1457	No
107	PEX7	2970180 6660270	12769	-0.058	0.1320	No
108	SEC23IP	4540484 6200047	12931	-0.063	0.1237	No
109	MARCH7	3800020 6620168	13209	-0.074	0.1091	No
110	NUP35	5340408	13244	-0.075	0.1077	No
111	TJP1	6350184	13886	-0.112	0.0737	No
112	PANX3	6560592	14216	-0.139	0.0567	No
113	MDFI	6200041	14397	-0.156	0.0479	No
114	ERCC5	770025 4540692	14456	-0.162	0.0458	No
115	UPP1	3850358 3940100	14501	-0.167	0.0444	No
116	TGIF2	3840364 4050520	14533	-0.171	0.0438	No
117	STAM	3850008 4760441	14677	-0.194	0.0372	No
118	FHL1	60278	14814	-0.220	0.0312	No
119	ARIH1	6900025	14961	-0.255	0.0248	No
120	STATIP1	4480022 6940097	15025	-0.270	0.0231	No
121	RABGGTB	3120037	15087	-0.288	0.0215	No
122	PSMD11	2340538 6510053	15242	-0.337	0.0152	No
123	PAFAH2	3140451 5720593 6510014	15254	-0.341	0.0167	No
124	ZZZ3	780133 2320239 2640452 5080706 6550341	15484	-0.427	0.0069	No
125	DICER1	540286	15633	-0.490	0.0018	No
126	IARS	460528 1580739 1690008	15734	-0.537	-0.0003	No
127	PPIC	4570110	15918	-0.626	-0.0064	No
128	CHD1	4590048	16253	-0.844	-0.0194	No
129	BACH1	290195	16429	-0.961	-0.0230	No
130	SMAD2	4200592	16628	-1.088	-0.0272	No
131	MAP4K3	5390551	16648	-1.104	-0.0215	No
132	SNX12	4060026	16960	-1.408	-0.0298	No
133	RNF138	110142 3870129 6020441 6400193	17075	-1.543	-0.0266	No
134	SEC23A	5860035	17162	-1.660	-0.0212	No
135	RASA1	1240315	17172	-1.670	-0.0115	No
136	ACADM	460112 3390113	17218	-1.727	-0.0035	No
137	EIF4EBP1	60132 5720148	17228	-1.733	0.0065	No
138	SOCS2	4760692	17316	-1.839	0.0130	No
139	GNB1	2120397	17416	-2.005	0.0198	No
140	FBXO38	2570095	17487	-2.112	0.0288	No
141	ITGA6	3830129	17748	-2.591	0.0304	No
142	GAB1	2970156	17814	-2.721	0.0434	No