Details for gene set SANSOM_APC_LOSS5

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	SANSOM_APC_LOSS5_UP
Enrichment Score (ES)	0.6869153
Normalized Enrichment Score (NES)	1.7358726
Nominal p-value	0.002173913
FDR q-value	0.014065876
FWER p-Value	0.127

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EIF1	5080100	124	5.099	0.0419	Yes
2	NOL5	580731	135	5.011	0.0891	Yes
3	CIRH1A	2340372	140	4.940	0.1360	Yes
4	GNL3	4050338 4810500	158	4.800	0.1808	Yes
5	GRWD1	6350528	216	4.407	0.2197	Yes
6	GNL2	6620022	244	4.263	0.2589	Yes
7	PRKRIR	2370402	269	4.139	0.2970	Yes
8	COPS2	3060142	271	4.137	0.3364	Yes
9	DDX21	6100446	298	3.996	0.3731	Yes
10	NSUN2	2120193	299	3.991	0.4111	Yes
11	UTP14A	6590048	300	3.970	0.4490	Yes
12	FTSJ3	3140100	324	3.875	0.4847	Yes
13	HK2	2640722	382	3.638	0.5162	Yes
14	SMYD5	6220025	443	3.444	0.5458	Yes
15	ETF1	6770075	490	3.269	0.5745	Yes
16	TXNL4A	4120286 6510242	606	3.022	0.5971	Yes
17	PES1	2470427	878	2.487	0.6062	Yes
18	SLC27A1	6110093	885	2.472	0.6294	Yes
19	NCL	2360463 4540279	893	2.461	0.6525	Yes
20	DDIT4	2570408	940	2.388	0.6728	Yes
21	PRIM2A	7000692	1071	2.220	0.6869	Yes
22	CDCA7	3060097	2203	1.051	0.6359	No
23	CDK9	630707	2609	0.834	0.6220	No
24	FUSIP1	520082 5390114	2622	0.828	0.6293	No
25	ADAM8	450347 5670609	3116	0.563	0.6080	No
26	EIF4G2	3800575 6860184	3224	0.516	0.6072	No
27	TNFRSF19	3870731 6940730	3549	0.399	0.5935	No
28	RNF4	580286 1400152	3681	0.358	0.5898	No
29	ORC2L	1990470 6510019	3710	0.349	0.5916	No
30	LAMC2	450692 2680041 4200059 4670148	3956	0.286	0.5811	No
31	MYC	380541 4670170	4017	0.274	0.5805	No
32	CD24	1780091	4251	0.230	0.5701	No
33	2300002G24RIK	2320040	4438	0.200	0.5620	No
34	9630050M13RIK	2370086	4502	0.190	0.5604	No
35	OLFR91	6290020	4508	0.190	0.5620	No
36	SYNCRIP	1690195 3140113 4670279	5008	0.136	0.5363	No
37	ZRF1	6020181 6510484	5139	0.125	0.5305	No
38	CEBPZ	2970053 2680068	5333	0.111	0.5211	No
39	EPHB3	6650341	6023	0.078	0.4847	No
40	SEMA3C	7000020	6238	0.070	0.4738	No
41	PLA2G12A	1740463 4010066 4050348	6436	0.064	0.4638	No
42	KCND2	1170128 2100112	6880	0.051	0.4404	No
43	PTBP2	1240398	6964	0.049	0.4364	No
44	RIN2	2450184	7078	0.046	0.4307	No
45	CITED1	2350670	7172	0.044	0.4261	No
46	REPS1	2320603 2510333	8093	0.026	0.3767	No
47	PLA2G2A	3190458	9356	0.007	0.3087	No
48	ZFP97	520324	9871	-0.001	0.2810	No
49	1110014J01RIK	1980332	10078	-0.004	0.2699	No
50	FOXA2	540338 5860441	10411	-0.009	0.2521	No
51	HELLS	4560086 4810025	10448	-0.010	0.2503	No
52	ANP32B	940095 2450494 4200368	10493	-0.010	0.2480	No
53	PKP1	1500433	10757	-0.015	0.2339	No
54	NUP54	940546 2360156 4060278	11088	-0.020	0.2163	No
55	KCNQ1	1580050 6860441	11279	-0.024	0.2063	No
56	FGFR4	2650072	11348	-0.025	0.2029	No
57	MMP7	1780497	11598	-0.030	0.1897	No
58	TSPAN12	4120010	11797	-0.034	0.1794	No
59	RNF149	5270494	12160	-0.042	0.1602	No
60	ZBTB17	6220082	12324	-0.046	0.1519	No
61	TGFBR1	1400148 4280020 6550711	12586	-0.052	0.1383	No
62	BTC	3190133	12604	-0.053	0.1379	No
63	MYO1B	770372	12752	-0.058	0.1305	No
64	FAM60A	3940092	12791	-0.059	0.1290	No
65	2810037C14RIK	5290575	13098	-0.070	0.1132	No
66	KIF5A	510435	14128	-0.131	0.0589	No
67	MDFI	6200041	14397	-0.156	0.0459	No
68	CD44	3990072 4850671 5860411 6860148 7050551	14448	-0.161	0.0448	No
69	HDC	4150463	14539	-0.172	0.0415	No
70	IFIT2	4810735	14686	-0.195	0.0355	No
71	KIF20A	2650050	14694	-0.196	0.0370	No
72	TIAM1	5420288	15194	-0.320	0.0131	No
73	HNRPAB	540504	15345	-0.371	0.0086	No
74	ZZZ3	780133 2320239 2640452 5080706 6550341	15484	-0.427	0.0052	No
75	SRR	1190465 3800494	15954	-0.645	-0.0139	No
76	MAP4K4	2360059	16478	-0.991	-0.0327	No
77	ZFP90	580121	16624	-1.083	-0.0302	No
78	FEM1B	1230110	16694	-1.148	-0.0230	No
79	SOX4	2260091	16991	-1.439	-0.0253	No
80	4930573I19RIK	5270402	17563	-2.247	-0.0346	No
81	1190002H23RIK	4480128	18032	-3.299	-0.0284	No
82	ETS2	360451	18515	-6.285	0.0054	No