Details for gene set CHANG_SERUM_RESPONSE

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	CHANG_SERUM_RESPONSE_UP
Enrichment Score (ES)	0.61965966
Normalized Enrichment Score (NES)	1.6659266
Nominal p-value	0.0
FDR q-value	0.037189864
FWER p-Value	0.527

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MRPL37	3710286 6420088	9	8.943	0.0474	Yes
2	NOLA2	4060167	41	6.591	0.0811	Yes
3	IFRD2	4150110	77	5.595	0.1092	Yes
4	LYAR	7000402	81	5.535	0.1387	Yes
5	JTV1	460324	133	5.018	0.1628	Yes
6	MRPS28	2230373	175	4.681	0.1857	Yes
7	MRPL12	3120112	204	4.467	0.2081	Yes
8	RUVBL1	4280239 5080273	217	4.398	0.2311	Yes
9	PA2G4	2030463	218	4.396	0.2546	Yes
10	PSMD14	5690593	291	4.035	0.2724	Yes
11	IPO4	5050619	353	3.741	0.2891	Yes
12	RFC3	1980600	432	3.495	0.3036	Yes
13	RNASEH2A	4850270	438	3.486	0.3220	Yes
14	TCEB1	1170619	447	3.431	0.3400	Yes
15	NME1	770014	457	3.394	0.3577	Yes
16	PSMA7	2230131	498	3.257	0.3730	Yes
17	SDC1	3440471 6350408	533	3.182	0.3882	Yes
18	LMNB2	5900692	551	3.143	0.4041	Yes
19	PSMC3	2480184	603	3.036	0.4177	Yes
20	PAICS	610142	608	3.017	0.4336	Yes
21	SRM	1850097 2480162	698	2.834	0.4440	Yes
22	NUTF2	1410471 5720050	761	2.707	0.4551	Yes
23	MCM3	5570068	925	2.409	0.4592	Yes
24	IL7R	2060088 6380500	959	2.354	0.4701	Yes
25	CCT5	1050670	965	2.341	0.4823	Yes
26	ENO1	5340128	1009	2.287	0.4923	Yes
27	SMS	2120707 4060162	1016	2.281	0.5042	Yes
28	NUP107	6380021	1025	2.269	0.5159	Yes
29	PSMD12	730044	1154	2.117	0.5203	Yes
30	LSM4	3130180	1159	2.107	0.5314	Yes
31	UMPS	2340541 4730438	1214	2.044	0.5394	Yes
32	TOMM40	6110017	1256	1.984	0.5479	Yes
33	HMGN2	3140091	1422	1.774	0.5484	Yes
34	PDAP1	1410735	1443	1.746	0.5567	Yes
35	TXNL2	70563 5700433 5720373	1603	1.577	0.5566	Yes
36	EIF4G1	4070446	1608	1.575	0.5648	Yes
37	RBMX	7100162 2900541	1619	1.566	0.5726	Yes
38	PLAUR	5910280	1687	1.512	0.5771	Yes
39	PPIH	5910403	1722	1.471	0.5832	Yes
40	MRPS16	2510390	1729	1.465	0.5907	Yes
41	MYBL2	5220609 6520368	1832	1.374	0.5925	Yes
42	SNRPD1	4480162	1850	1.362	0.5989	Yes
43	LSM3	780164	1854	1.358	0.6060	Yes
44	CORO1C	4570397	1886	1.320	0.6114	Yes
45	PSMD2	4670706 5050364	1939	1.273	0.6155	Yes
46	TPI1	1500215 2100154	2093	1.147	0.6133	Yes
47	VDAC1	4760059	2241	1.029	0.6109	Yes
48	SFRS2	50707 380593	2242	1.028	0.6164	Yes
49	HMGB1	2120670 2350044	2342	0.997	0.6164	Yes
50	TNFRSF12A	4810253	2443	0.943	0.6160	Yes
51	CDK2	130484 2260301 4010088 5050110	2469	0.928	0.6197	Yes
52	MCM7	3290292 5220056	2567	0.868	0.6191	No
53	EEF1E1	4540711	2850	0.695	0.6075	No
54	TPM2	520735 3870390	2852	0.695	0.6112	No
55	SSR3	1400040	2904	0.668	0.6120	No
56	BRIP1	1050427	2910	0.665	0.6153	No
57	TUBG1	3140204	2999	0.621	0.6139	No
58	CBX1	5080408 1980239	3089	0.578	0.6122	No
59	H2AFZ	1470168	3180	0.533	0.6102	No
60	EMP2	580128	3286	0.493	0.6071	No
61	SLC25A5	1980672	3761	0.331	0.5833	No
62	CDCA4	5890315 6110487	3814	0.319	0.5822	No
63	SNRPA	2570100 4150121 6940484	3958	0.285	0.5760	No
64	SNRPB	1230097 2940086 3520671	3963	0.283	0.5773	No
65	BRCA2	4280372	3965	0.282	0.5787	No
66	COTL1	3840050 6350215	4190	0.238	0.5679	No
67	TPM1	130673	4315	0.220	0.5623	No
68	HAS2	5360181	4428	0.201	0.5574	No
69	NLN	1450576 5870575	4515	0.189	0.5537	No
70	NUPL1	360273 6770100	4734	0.161	0.5428	No
71	GNG11	4010142	4741	0.160	0.5433	No
72	CENPJ	6660551 4670592	4868	0.148	0.5373	No
73	FLNC	2360048 5050270	5307	0.113	0.5142	No
74	SLC16A1	50433	5750	0.089	0.4908	No
75	PLG	3360270 3840100	5809	0.086	0.4881	No
76	UBE2J1	4070133	5865	0.084	0.4856	No
77	HNRPR	2320440 2900601 4610008	6038	0.078	0.4767	No
78	MT3	1450537	6123	0.074	0.4725	No
79	CHEK1	50167 1940300	6368	0.066	0.4597	No
80	SNRPE	5080021	7256	0.043	0.4120	No
81	POLE2	6110041	8698	0.017	0.3341	No
82	F3	2940180	9038	0.011	0.3158	No
83	MTHFD1	5900398 6520427	9650	0.003	0.2828	No
84	TFPI2	3870324	9674	0.002	0.2816	No
85	MET	2690348	9734	0.001	0.2784	No
86	RBM14	5340731 5690315	10440	-0.010	0.2403	No
87	MNAT1	730292 2350364	10505	-0.011	0.2369	No
88	MKKS	2760722 3390563	10893	-0.017	0.2160	No
89	TAGLN	6660280	10931	-0.017	0.2141	No
90	PNN	6650504	11196	-0.022	0.2000	No
91	RPN1	1240113	11446	-0.027	0.1867	No
92	ADAMTS1	3140286 5860463	11565	-0.029	0.1804	No
93	MYCBP	4280528	11567	-0.029	0.1805	No
94	RNF41	1050711 5820333	11615	-0.030	0.1781	No
95	EPHB1	4610056	11791	-0.033	0.1689	No
96	MYBL1	2900168	12014	-0.038	0.1571	No
97	GGH	4850373 6290152	12107	-0.041	0.1523	No
98	GPLD1	6100121 6290154	12847	-0.061	0.1127	No
99	DHFR	6350315	13114	-0.070	0.0986	No
100	LOXL2	730017	13596	-0.093	0.0731	No
101	COPS6	1850195	14129	-0.131	0.0450	No
102	SNRPA1	1050735 6110131	14482	-0.165	0.0269	No
103	COX17	6250072	14499	-0.167	0.0269	No
104	EBNA1BP2	50369 1400433 6040019	14634	-0.189	0.0207	No
105	PLOD2	3360427	15397	-0.390	-0.0184	No
106	POLR3K	1400577 5290500	15644	-0.495	-0.0291	No
107	MAPRE1	3290037	15648	-0.496	-0.0266	No
108	NUDT1	2850600	15681	-0.512	-0.0256	No
109	PITPNC1	3990017	15873	-0.604	-0.0327	No
110	MAP3K8	2940286	15987	-0.666	-0.0352	No
111	UAP1	3060093	15996	-0.673	-0.0320	No
112	PFN1	6130132	16033	-0.689	-0.0303	No
113	SSSCA1	1240402 780309	16056	-0.701	-0.0277	No
114	SMURF2	1940161	16062	-0.703	-0.0242	No
115	MYL6	60563 6100152	16138	-0.754	-0.0242	No
116	SFRS10	6130528 6400438 7040112	16451	-0.976	-0.0359	No
117	PFKP	70138 6760040 1170278	16468	-0.985	-0.0315	No
118	HNRPA2B1	1240619 6200161 6200494 6980408	16491	-0.998	-0.0273	No
119	BCCIP	670450 2650750 5270519 6660711	16499	-1.000	-0.0223	No
120	DCLRE1B	540070 4730373 5550176	16531	-1.021	-0.0185	No
121	RNF138	110142 3870129 6020441 6400193	17075	-1.543	-0.0396	No
122	EIF4EBP1	60132 5720148	17228	-1.733	-0.0386	No
123	MSN	4060044	17490	-2.112	-0.0414	No
124	PTS	1500270	17708	-2.515	-0.0396	No
125	WSB2	2900433	17742	-2.581	-0.0276	No
126	ITGA6	3830129	17748	-2.591	-0.0140	No
127	PCSK7	6370450	17812	-2.715	-0.0028	No
128	VIL2	5570161	18211	-3.944	-0.0032	No
129	DCK	6900411	18345	-4.675	0.0147	No