Details for gene set REACTOME_GENE

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	REACTOME_GENE_EXPRESSION
Enrichment Score (ES)	0.6282883
Normalized Enrichment Score (NES)	1.7217789
Nominal p-value	0.0
FDR q-value	0.023291158
FWER p-Value	0.097

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EIF2S2	770095 2810487	26	7.527	0.0396	Yes
2	U2AF1	5130292	56	6.059	0.0710	Yes
3	RARS	380390	105	5.267	0.0970	Yes
4	METTL3	360497	138	4.992	0.1224	Yes
5	EIF4B	5390563 5270577	144	4.909	0.1489	Yes
6	RPS3A	2470086	166	4.747	0.1736	Yes
7	NARS	1660722	202	4.500	0.1962	Yes
8	NUP93	2190273	229	4.326	0.2183	Yes
9	CCNH	3190347	389	3.617	0.2294	Yes
10	GARS	1230601	425	3.520	0.2466	Yes
11	TCEB1	1170619	447	3.431	0.2642	Yes
12	RPS19	5860066	470	3.345	0.2812	Yes
13	ETF1	6770075	490	3.269	0.2979	Yes
14	GTF2H2	5130358	510	3.235	0.3145	Yes
15	CPSF1	6290064	558	3.130	0.3290	Yes
16	TXNL4A	4120286 6510242	606	3.022	0.3429	Yes
17	PHF5A	2690519	652	2.899	0.3562	Yes
18	RPS24	5420377	733	2.747	0.3669	Yes
19	SFRS6	60224	743	2.731	0.3812	Yes
20	SNRPF	3170280	754	2.717	0.3955	Yes
21	POLR2I	4060400	773	2.673	0.4090	Yes
22	SF3A3	6660603	793	2.637	0.4224	Yes
23	YBX1	1340039 4730500	798	2.627	0.4364	Yes
24	AARS	1570279 2370136	811	2.592	0.4499	Yes
25	CCAR1	3190092	832	2.558	0.4627	Yes
26	POLR2E	2900348 3360348	977	2.327	0.4676	Yes
27	EIF2B1	4610082 7040242	1002	2.298	0.4788	Yes
28	EIF4A1	1990341 2810300	1010	2.286	0.4909	Yes
29	NUP43	3360482	1129	2.156	0.4962	Yes
30	RAE1	7050121	1136	2.145	0.5076	Yes
31	SFRS9	3800047	1262	1.978	0.5116	Yes
32	CCNC	3390750	1347	1.885	0.5173	Yes
33	EIF2B2	4290048	1384	1.830	0.5253	Yes
34	SNRPD2	6110035	1403	1.796	0.5341	Yes
35	RPL38	70040 4060138 6200601	1465	1.722	0.5401	Yes
36	RPL14	5080471	1487	1.695	0.5482	Yes
37	EIF4G1	4070446	1608	1.575	0.5503	Yes
38	RPS23	7100594	1740	1.455	0.5511	Yes
39	POLR2H	5890242	1773	1.425	0.5571	Yes
40	U2AF2	450600 4670128 5420292	1806	1.393	0.5630	Yes
41	GTF2H3	50600	1881	1.328	0.5662	Yes
42	SF3A2	3140500	1920	1.295	0.5712	Yes
43	NUP62	1240128	1966	1.249	0.5756	Yes
44	GTF2E2	4010441	1987	1.229	0.5812	Yes
45	RPL5	840095	2014	1.203	0.5863	Yes
46	RNMT	1770500	2022	1.199	0.5924	Yes
47	NUP160	1990551	2080	1.158	0.5957	Yes
48	SFRS2	50707 380593	2242	1.028	0.5925	Yes
49	RPL27A	3130451 110195 6840494	2322	1.000	0.5937	Yes
50	CSTF1	4610129	2332	0.999	0.5987	Yes
51	RBM5	3520402 5270121	2345	0.997	0.6034	Yes
52	EIF5	6380750	2465	0.931	0.6020	Yes
53	SFRS3	770315 4230593	2473	0.924	0.6067	Yes
54	TBP	1450601 2810193	2558	0.871	0.6069	Yes
55	RPLP2	5290020	2653	0.809	0.6062	Yes
56	NUPL2	6550537	2656	0.807	0.6105	Yes
57	EEF1G	3940603	2759	0.740	0.6090	Yes
58	DNAJC8	4050075	2819	0.712	0.6097	Yes
59	EEF1E1	4540711	2850	0.695	0.6118	Yes
60	YARS	70739	2877	0.681	0.6141	Yes
61	TAF12	3710746 4920300 6180603	2923	0.662	0.6153	Yes
62	RPS15A	1170180	2946	0.651	0.6176	Yes
63	TAF11	5720538	2986	0.625	0.6189	Yes
64	RPS2	1340647	3005	0.619	0.6213	Yes
65	RNGTT	780152 780746 1090471	3012	0.614	0.6243	Yes
66	SNRPG	2340551	3041	0.601	0.6261	Yes
67	SF3B4	110072	3061	0.592	0.6283	Yes
68	FARS2	5340575	3125	0.558	0.6279	No
69	MED6	6840500	3300	0.487	0.6211	No
70	RPL4	2940014 5420324	3340	0.471	0.6216	No
71	RPL18A	4570619	3400	0.449	0.6208	No
72	NUDT21	1240167	3411	0.446	0.6227	No
73	RDBP	6590044	3464	0.429	0.6222	No
74	GTF2H1	2570746 2650148	3831	0.315	0.6041	No
75	SNRPB	1230097 2940086 3520671	3963	0.283	0.5986	No
76	RARS2	5570524 6290497 6900332	3985	0.278	0.5990	No
77	RPL8	20296	4030	0.270	0.5981	No
78	POLR2J	7100372	4198	0.236	0.5903	No
79	RPL27	1940088	4309	0.221	0.5855	No
80	MAGOH	2370373 5050068	4343	0.215	0.5849	No
81	RPS21	3120673	4354	0.214	0.5855	No
82	POLR2A	5220647	4360	0.213	0.5864	No
83	SNW1	4010736	4527	0.187	0.5785	No
84	RPLP1	3140292	4620	0.175	0.5744	No
85	PTBP1	4070736	4661	0.171	0.5732	No
86	RPS13	1570364	4862	0.148	0.5632	No
87	RANBP2	4280338	4977	0.138	0.5578	No
88	RPL6	6040735	5020	0.135	0.5562	No
89	TAF9	1850458 3830136	5068	0.131	0.5544	No
90	EEF2	1050369 4670035 5890598	5137	0.125	0.5514	No
91	EIF2S1	5360292	5490	0.101	0.5329	No
92	RPS29	580324	5556	0.098	0.5299	No
93	EPRS	3170301	6554	0.060	0.4762	No
94	SFRS1	2360440	7351	0.041	0.4334	No
95	RNPS1	610736 1090021	7551	0.037	0.4228	No
96	CDK7	2640451	7747	0.033	0.4124	No
97	RPL17	2690167 5690504	8638	0.018	0.3643	No
98	POLR2B	3780138	8831	0.015	0.3540	No
99	HARS	6100487	9177	0.009	0.3354	No
100	CCNT2	2100390 4150563	9605	0.003	0.3123	No
101	TPR	1990066 6550390	10130	-0.005	0.2840	No
102	GTF2A2	2230184	10188	-0.006	0.2809	No
103	NUP54	940546 2360156 4060278	11088	-0.020	0.2324	No
104	NUP153	7000452	11304	-0.024	0.2208	No
105	TAF4	1450170	11337	-0.025	0.2192	No
106	DHX9	60017 1170095 2260014	11358	-0.025	0.2183	No
107	EIF5B	1190102 4200440	11393	-0.026	0.2166	No
108	SNRPB2	5720577	12393	-0.048	0.1628	No
109	POLR2C	1690020	12863	-0.061	0.1377	No
110	NUP35	5340408	13244	-0.075	0.1176	No
111	SF3B1	7000632	13414	-0.082	0.1089	No
112	RPL18	6380181 3870195	13705	-0.099	0.0937	No
113	RPL41	6940112	13829	-0.107	0.0876	No
114	LARS2	7000706	14105	-0.129	0.0734	No
115	SNRPA1	1050735 6110131	14482	-0.165	0.0540	No
116	NFX1	450504	14620	-0.186	0.0476	No
117	RPS28	3830221	14941	-0.248	0.0316	No
118	RPL28	6900136	14951	-0.251	0.0325	No
119	SMC1A	3060600 5700148 5890113 6370154	15208	-0.324	0.0204	No
120	RPS16	510722	15209	-0.324	0.0221	No
121	EIF4E	1580403 70133 6380215	15331	-0.366	0.0176	No
122	TH1L	1190632	15693	-0.518	0.0009	No
123	RPS5	580093	15706	-0.525	0.0031	No
124	IARS	460528 1580739 1690008	15734	-0.537	0.0045	No
125	RPL37A	7040717	15752	-0.544	0.0066	No
126	FAU	7100465	15800	-0.569	0.0071	No
127	RPS20	1740092	15879	-0.606	0.0062	No
128	SFRS5	3450176 6350008	15913	-0.624	0.0078	No
129	GTF2B	6860685	16123	-0.749	0.0006	No
130	RPL11	3780435	16155	-0.763	0.0030	No
131	RPL19	5550592	16319	-0.890	-0.0009	No
132	ERCC3	6900008	16321	-0.891	0.0039	No
133	SF3B3	3710044	16344	-0.907	0.0076	No
134	CCNT1	2450563 5390184	16513	-1.008	0.0040	No
135	ELL	3520731	16592	-1.054	0.0055	No
136	PRPF8	1230497 1570600	16611	-1.073	0.0104	No
137	SF3B2	6590576	16697	-1.150	0.0120	No
138	PRPF4	430301 2970364	16797	-1.252	0.0135	No
139	TAF10	2760020	17007	-1.459	0.0101	No
140	SRRM1	6110025	17118	-1.597	0.0128	No
141	SFRS7	2760408	17122	-1.602	0.0214	No
142	EIF4EBP1	60132 5720148	17228	-1.733	0.0251	No
143	CD2BP2	1580301	17880	-2.874	0.0055	No
144	SUPT4H1	6200056	17902	-2.914	0.0203	No
145	WARS	2570717 3290139	18060	-3.371	0.0301	No