Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.61311364
Normalized Enrichment Score (NES)	-1.566161
Nominal p-value	0.0
FDR q-value	0.13590229
FWER p-Value	0.93

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PTK2	1780148	20	7.873	0.0435	No
2	CEBPB	2970019	40	6.620	0.0800	No
3	UNC119	360372	446	3.435	0.0776	No
4	GRB2	6650398	481	3.303	0.0945	No
5	PTPN22	1690647 7100239	585	3.076	0.1064	No
6	STAT5A	2680458	695	2.835	0.1165	No
7	PIK3R2	1660193	807	2.604	0.1253	No
8	YWHAQ	6760524	834	2.555	0.1384	No
9	NCL	2360463 4540279	893	2.461	0.1492	No
10	PTPRC	130402 5290148	1532	1.647	0.1241	No
11	HOMER3	3830279	2943	0.651	0.0516	No
12	ABL1	1050593 2030050 4010114	2989	0.624	0.0527	No
13	CREBBP	5690035 7040050	3008	0.616	0.0552	No
14	ARHGEF6	4780164 6380450	3184	0.532	0.0488	No
15	SHB	4920494	3449	0.433	0.0370	No
16	RAPGEF1	60040 4590670	3559	0.395	0.0333	No
17	STK39	50692	3615	0.379	0.0325	No
18	DUSP3	1240129 6840215	4025	0.271	0.0119	No
19	MAPK1	3190193 6200253	4254	0.228	0.0009	No
20	CDC42	1240168 3440278 4480519 5290162	4538	0.186	-0.0133	No
21	ENAH	1690292 5700300	5326	0.112	-0.0552	No
22	PLCG1	6020369	5644	0.094	-0.0718	No
23	PAG1	5910397	5703	0.091	-0.0744	No
24	GRAP2	7100441 1410647	6704	0.056	-0.1281	No
25	PTPN11	2230100 2470180 6100528	7253	0.043	-0.1575	No
26	LYN	6040600	7419	0.039	-0.1662	No
27	PIK3R1	4730671	7432	0.039	-0.1666	No
28	PTPRJ	4010707	7521	0.037	-0.1711	No
29	INSL3	4150092	7529	0.037	-0.1713	No
30	AKT1	5290746	7793	0.032	-0.1853	No
31	MAP2K1	840739	8058	0.027	-0.1994	No
32	RAP1A	1090025	8179	0.025	-0.2058	No
33	CREB1	1500717 2230358 3610600 6550601	8536	0.020	-0.2249	No
34	TUBB2A	6940435	8661	0.018	-0.2315	No
35	TXK	2320338	8747	0.016	-0.2360	No
36	PTPRH	3870070	9344	0.007	-0.2682	No
37	NFATC2	70450 540097	9799	0.000	-0.2927	No
38	SKAP2	6760500	9994	-0.003	-0.3031	No
39	PTPN3	870369	10413	-0.009	-0.3257	No
40	PRKCQ	2260170 3870193	10603	-0.012	-0.3358	No
41	GAB2	1410280 2340520 4280040	10728	-0.014	-0.3424	No
42	SOS1	7050338	11112	-0.021	-0.3630	No
43	JUN	840170	11408	-0.026	-0.3788	No
44	CD2AP	1940369	11502	-0.028	-0.3837	No
45	ARHGEF7	1690441	12123	-0.041	-0.4169	No
46	NCK1	6200575 6510050	12465	-0.049	-0.4350	No
47	SRC	580132	12487	-0.050	-0.4359	No
48	ACP1	1990435	12738	-0.057	-0.4491	No
49	SYK	6940133	12894	-0.062	-0.4571	No
50	SLA	2000070	13587	-0.092	-0.4940	No
51	SHC1	2900731 3170504 6520537	13933	-0.115	-0.5119	No
52	DLG1	2630091 6020286	13942	-0.116	-0.5117	No
53	FOS	1850315	14050	-0.124	-0.5168	No
54	DBNL	7100088	14494	-0.166	-0.5398	No
55	PTPN12	2030309 6020725 6130746 6290609	14741	-0.205	-0.5519	No
56	FYB	1690440	14935	-0.245	-0.5609	No
57	CBLB	3520465 4670348	14969	-0.256	-0.5613	No
58	STAT5B	6200026	14990	-0.263	-0.5609	No
59	SOS2	2060722	15106	-0.293	-0.5654	No
60	JAK3	70347 3290008	15141	-0.301	-0.5655	No
61	RIPK2	5050072 6290632	15296	-0.354	-0.5719	No
62	KHDRBS1	1240403 6040040	15347	-0.371	-0.5725	No
63	SH2D3C	3060014	15426	-0.401	-0.5744	No
64	VAV3	1050731 2450242 2680653	15836	-0.584	-0.5932	No
65	FYN	2100468 4760520 4850687	15899	-0.618	-0.5930	No
66	ABI1	2850152	15943	-0.636	-0.5917	No
67	ZAP70	1410494 2260504	16100	-0.731	-0.5960	No
68	LCP2	2680066 6650707	16233	-0.826	-0.5985	No
69	VASP	7050500	16479	-0.992	-0.6061	No
70	SH3BP2	610131	16610	-1.072	-0.6070	Yes
71	WIPF1	1170577	16615	-1.078	-0.6011	Yes
72	CRK	1230162 4780128	16625	-1.085	-0.5955	Yes
73	MAP4K1	4060692	16760	-1.214	-0.5958	Yes
74	GRAP	1770195	16915	-1.366	-0.5964	Yes
75	DNM2	50176 3170279	16937	-1.388	-0.5897	Yes
76	ARHGDIB	4730433	17124	-1.603	-0.5907	Yes
77	LAT	3170025	17151	-1.641	-0.5828	Yes
78	RASA1	1240315	17172	-1.670	-0.5744	Yes
79	PTPN6	4230128	17289	-1.812	-0.5704	Yes
80	TUBA4A	6900279	17572	-2.264	-0.5728	Yes
81	DOCK2	2940040	17584	-2.287	-0.5604	Yes
82	GIT2	6040039 6770181	17645	-2.385	-0.5501	Yes
83	CBL	6380068	17677	-2.437	-0.5380	Yes
84	DTX1	5900372	17731	-2.550	-0.5264	Yes
85	LCK	3360142	17786	-2.667	-0.5142	Yes
86	WAS	5270193	17806	-2.699	-0.5000	Yes
87	WASF2	4850592	18043	-3.321	-0.4939	Yes
88	EVL	1740113	18072	-3.430	-0.4760	Yes
89	BCL10	2360397	18080	-3.458	-0.4567	Yes
90	NEDD9	1740373 4230053	18125	-3.600	-0.4387	Yes
91	VAV1	6020487	18137	-3.653	-0.4186	Yes
92	CRKL	4050427	18162	-3.756	-0.3986	Yes
93	CD4	1090010	18290	-4.362	-0.3808	Yes
94	CD3D	2810739	18306	-4.485	-0.3562	Yes
95	CISH	840315	18331	-4.586	-0.3315	Yes
96	CARD11	70338	18363	-4.788	-0.3060	Yes
97	PSTPIP1	3190156	18388	-4.968	-0.2792	Yes
98	SH2D2A	2970594	18446	-5.512	-0.2510	Yes
99	CD3E	3800056	18448	-5.536	-0.2197	Yes
100	CD247	3800725 5720136	18488	-5.985	-0.1879	Yes
101	DEF6	840593	18489	-6.000	-0.1539	Yes
102	ITK	2230592	18492	-6.023	-0.1199	Yes
103	PTK2B	4730411	18527	-6.405	-0.0854	Yes
104	CD3G	2680288	18554	-6.817	-0.0482	Yes
105	CD5	6590338	18606	-9.083	0.0005	Yes