Details for gene set BRCA1KO_MEF

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	BT_ATM_minus
GeneSet	BRCA1KO_MEF_DN
Enrichment Score (ES)	0.42343736
Normalized Enrichment Score (NES)	1.6725811
Nominal p-value	0.0
FDR q-value	0.2718
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	84	2.405	0.0386	Yes
2	ROCK2	1423592_at 1451041_at	175	1.980	0.0694	Yes
3	GFRA1	1421973_at 1439015_at 1450440_at	184	1.963	0.1037	Yes
4	ANGEL2	1415731_at 1431606_a_at 1437050_s_at 1448360_s_at 1453741_x_at 1455362_at	411	1.568	0.1210	Yes
5	SMARCA3	1425996_a_at 1450889_at 1451901_at	484	1.469	0.1437	Yes
6	MGA	1422646_at 1431232_a_at 1433012_at 1434746_at 1442356_at	521	1.423	0.1671	Yes
7	RFC1	1418342_at 1449050_at 1451920_a_at	562	1.372	0.1895	Yes
8	USP47	1426976_at 1426977_at 1457454_at	590	1.351	0.2121	Yes
9	MAP2K4	1426233_at 1442679_at 1451982_at	597	1.346	0.2356	Yes
10	NCOR1	1423200_at 1423201_at 1423202_a_at 1435914_at 1438276_at 1444760_at 1445230_at 1446574_at 1457007_at 1457938_at 1458103_at	840	1.172	0.2452	Yes
11	UBE3A	1416680_at 1416681_at 1416682_at 1425206_a_at 1431224_at 1445727_at	846	1.170	0.2656	Yes
12	EPN2	1427225_at 1427226_at 1433915_s_at 1440175_at 1447599_x_at 1454303_at 1454304_at	941	1.124	0.2812	Yes
13	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	1077	1.067	0.2938	Yes
14	UTX	1427235_at 1427672_a_at 1440524_at 1441201_at 1445198_at 1446234_at 1446278_at	1086	1.064	0.3123	Yes
15	NFE2L2	1416543_at 1457117_at	1211	1.028	0.3247	Yes
16	CDC2L6	1434997_at 1442225_at	1225	1.025	0.3422	Yes
17	NCOA1	1418594_a_at 1434515_at 1439883_at 1443397_at 1443438_at 1459277_at	1289	1.012	0.3572	Yes
18	ZFR	1419650_at 1442311_at 1443002_at 1443353_at 1443357_at 1444096_at 1449552_at 1458450_at	1431	0.984	0.3681	Yes
19	CHD1	1420990_at 1444787_at 1444788_x_at 1450077_at 1457473_at	1480	0.974	0.3831	Yes
20	COL3A1	1427883_a_at 1427884_at 1442977_at	1614	0.945	0.3937	Yes
21	ITCH	1415769_at 1431316_at 1459332_at	1688	0.928	0.4067	Yes
22	NET1	1421321_a_at 1457830_at	2008	0.853	0.4072	Yes
23	SHOC2	1423129_at 1425845_a_at	2217	0.805	0.4119	Yes
24	VPS35	1415783_at 1415784_at	2295	0.787	0.4223	Yes
25	CLK1	1426124_a_at	2787	0.684	0.4119	Yes
26	YME1L1	1423360_at 1423361_at 1437822_at 1450954_at	2914	0.663	0.4178	Yes
27	PNN	1423324_at 1423325_at	3038	0.639	0.4234	Yes
28	HOXB9	1452317_at	3932	0.507	0.3915	No
29	SEPP1	1452141_a_at	4154	0.478	0.3899	No
30	SLK	1419092_a_at 1425977_a_at 1433999_at 1441262_at 1443815_x_at 1449336_a_at	4157	0.478	0.3982	No
31	ABCA1	1421839_at 1421840_at 1450392_at	4772	0.413	0.3774	No
32	EIF3S10	1416659_at 1416660_at 1416661_at 1448425_at	5435	0.349	0.3533	No
33	GOLGA4	1417674_s_at 1448803_at 1460213_at	5463	0.347	0.3582	No
34	CEBPZ	1420497_a_at 1429962_at	6436	0.266	0.3184	No
35	ADD3	1423297_at 1423298_at 1426574_a_at 1447077_at 1456162_x_at	7495	0.189	0.2733	No
36	ZFX	1419565_a_at 1425972_a_at 1428046_a_at 1449512_a_at	7631	0.179	0.2703	No
37	FMR1	1423369_at 1426086_a_at 1452550_a_at	8402	0.126	0.2373	No
38	RABEP1	1421305_x_at 1426023_a_at 1427448_at 1443856_at 1444930_at 1459494_at	8413	0.126	0.2391	No
39	TGFBR3	1425620_at 1433795_at 1440041_at 1442332_at 1447314_at 1459355_at	8523	0.119	0.2362	No
40	HFE	1422645_at 1450702_at	8706	0.107	0.2298	No
41	NKTR	1423248_at 1423249_at 1437660_at 1440804_at 1458676_at	8901	0.095	0.2226	No
42	CASP1	1449265_at	9164	0.079	0.2120	No
43	CASP4	1449591_at	9714	0.044	0.1877	No
44	BAAT	1419001_at 1419002_s_at	10316	0.006	0.1603	No
45	TJP1	1417749_a_at	10543	-0.008	0.1501	No
46	KLF9	1422264_s_at 1428288_at 1428289_at 1436763_a_at 1436952_at 1452723_at 1456341_a_at	10672	-0.016	0.1445	No
47	IPO7	1442511_at 1454955_at 1458165_at	11255	-0.054	0.1188	No
48	GSPT1	1426736_at 1426737_at 1435000_at 1446550_at 1452168_x_at 1455173_at	11964	-0.097	0.0881	No
49	TPP2	1421893_a_at 1421894_a_at 1430575_a_at 1430576_at 1438264_a_at	12566	-0.134	0.0630	No
50	ZNF148	1418381_at 1427730_a_at 1436217_at 1441612_at 1441701_at 1449068_at 1449069_at 1455483_at	13198	-0.174	0.0372	No
51	BNIP3	1422470_at	13233	-0.176	0.0388	No
52	USP16	1430203_at 1431951_a_at	13354	-0.184	0.0365	No
53	IMMT	1429533_at 1429534_a_at 1433470_a_at 1437126_at	15434	-0.332	-0.0527	No
54	NID1	1416808_at 1441519_at	15459	-0.334	-0.0479	No
55	RAI14	1417400_at 1417401_at 1441030_at 1444777_at	15729	-0.353	-0.0540	No
56	LAMC1	1423885_at 1423886_at	15810	-0.360	-0.0513	No
57	MPO	1415960_at	16160	-0.390	-0.0604	No
58	TLOC1	1432635_a_at 1433704_s_at 1439233_at 1444811_at 1454697_at 1455698_at	17139	-0.483	-0.0966	No
59	DCLRE1A	1417904_at 1432097_a_at 1442329_at	17349	-0.505	-0.0973	No
60	NEFL	1426255_at	17545	-0.526	-0.0969	No
61	VLDLR	1417900_a_at 1434465_x_at 1435893_at 1438258_at 1442169_at 1451156_s_at	17758	-0.551	-0.0969	No
62	FAF1	1418242_at 1434370_s_at	18213	-0.611	-0.1068	No
63	UBE2L3	1417907_at 1417908_s_at 1448879_at 1448880_at	18651	-0.675	-0.1149	No
64	GSTA4	1416368_at	19183	-0.761	-0.1258	No
65	TCF12	1421908_a_at 1427670_a_at 1438762_at 1439209_at 1439619_at 1443012_at 1444620_at 1445093_at 1445133_at 1457524_at 1458337_at	19284	-0.782	-0.1166	No
66	GPT2	1434542_at 1438385_s_at 1439029_at 1455007_s_at	19721	-0.867	-0.1212	No
67	PDIA4	1416497_at	20027	-0.938	-0.1186	No
68	SMAD1	1416081_at 1448208_at 1459843_s_at	20029	-0.939	-0.1021	No
69	BIRC3	1421392_a_at 1425223_at	20286	-1.002	-0.0961	No
70	ENPP2	1415894_at 1443224_at 1448136_at	20328	-1.009	-0.0802	No
71	ATF2	1426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at	20910	-1.212	-0.0854	No
72	XRN2	1422842_at 1450777_at	20952	-1.232	-0.0655	No
73	NDRG3	1417663_a_at 1417664_a_at	21135	-1.326	-0.0504	No
74	CCPG1	1420127_s_at 1424420_at 1447003_at	21243	-1.410	-0.0304	No
75	STK10	1417751_at 1459736_at	21460	-1.615	-0.0118	No
76	BAZ2B	1435240_at 1440984_at 1441556_at 1442704_at 1442971_at 1445048_at 1448007_at 1458077_at	21636	-1.895	0.0136	No