Details for gene set BASSO_GERMINAL_CENTER_CD40

Table: GSEA Results Summary

Dataset	Set_02_BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus.phenotype_BT_ATM_minus_versus_ATM_plus.cls #BT_ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_BT_ATM_minus_versus_ATM_plus.cls#BT_ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	BASSO_GERMINAL_CENTER_CD40_UP
Enrichment Score (ES)	-0.58361787
Normalized Enrichment Score (NES)	-2.209722
Nominal p-value	0.0
FDR q-value	9.25613E-4
FWER p-Value	0.0050

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PTK2B	1434653_at 1442437_at 1442927_at	16	3.364	0.0355	No
2	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	84	2.405	0.0584	No
3	TAP1	1416016_at 1420274_at 1448177_at 1449803_x_at	1320	1.006	0.0127	No
4	CHD1	1420990_at 1444787_at 1444788_x_at 1450077_at 1457473_at	1480	0.974	0.0159	No
5	PLEK	1417523_at 1448748_at 1448749_at	1628	0.942	0.0194	No
6	LAPTM5	1426025_s_at 1436905_x_at 1447742_at 1459841_x_at	1677	0.930	0.0272	No
7	HSP90B1	1415889_a_at 1438040_a_at	1697	0.926	0.0363	No
8	IER3	1419647_a_at	1760	0.910	0.0433	No
9	SLAMF1	1425569_a_at 1425570_at 1425571_at	1937	0.871	0.0446	No
10	SH2B3	1433455_at 1442756_at 1450183_a_at	2042	0.846	0.0490	No
11	SNF1LK	1419766_at 1459601_at	2335	0.779	0.0440	No
12	NFKBIE	1431843_a_at 1458299_s_at	3109	0.625	0.0154	No
13	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	3986	0.501	-0.0193	No
14	MYB	1421317_x_at 1422734_a_at 1450194_a_at	5294	0.363	-0.0752	No
15	CCL4	1421578_at	5373	0.355	-0.0750	No
16	PTP4A3	1418181_at 1418182_at	5393	0.354	-0.0720	No
17	LGALS1	1419573_a_at 1455439_a_at	5692	0.327	-0.0821	No
18	TCFL5	1456515_s_at	5876	0.310	-0.0872	No
19	CR2	1425289_a_at	5962	0.303	-0.0878	No
20	RGS1	1417601_at	6520	0.259	-0.1105	No
21	HTR3A	1418268_at	6757	0.242	-0.1187	No
22	RAB27A	1425284_a_at 1425285_a_at 1429123_at 1454438_at	7668	0.176	-0.1584	No
23	CCL3	1419561_at	7670	0.176	-0.1566	No
24	NEF3	1422520_at	9058	0.086	-0.2191	No
25	RXRA	1425762_a_at 1430497_at 1454773_at	10011	0.025	-0.2624	No
26	LHFPL2	1434129_s_at 1434130_at 1443185_at 1454847_at	12078	-0.103	-0.3559	No
27	TRIP10	1418092_s_at	12569	-0.134	-0.3769	No
28	PRG1	1417426_at	12592	-0.135	-0.3764	No
29	MAP3K8	1419208_at	12729	-0.144	-0.3811	No
30	NCF2	1448561_at	12797	-0.149	-0.3825	No
31	TNFAIP8	1416950_at 1442239_at 1442753_at 1444224_at 1457996_at	14284	-0.247	-0.4479	No
32	TNFAIP2	1416273_at 1438855_x_at 1457918_at	14627	-0.273	-0.4606	No
33	CFLAR	1424996_at 1425686_at 1425687_at 1439600_at 1449317_at	14961	-0.297	-0.4726	No
34	STAT1	1420915_at 1440481_at 1450033_a_at 1450034_at	15109	-0.307	-0.4761	No
35	IL1B	1449399_a_at	15545	-0.340	-0.4923	No
36	PHACTR1	1432851_at 1432852_at 1439022_at 1454832_at	15699	-0.352	-0.4955	No
37	ARID5B	1420972_at 1420973_at 1434283_at 1442176_at 1445423_at 1456831_at 1456973_at 1457483_at 1458238_at	15869	-0.366	-0.4993	No
38	BCL2	1422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at	15936	-0.372	-0.4983	No
39	MAPKAPK2	1426648_at	16184	-0.392	-0.5054	No
40	DTX2	1421720_a_at 1439429_x_at	16236	-0.397	-0.5034	No
41	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	16399	-0.411	-0.5064	No
42	NFKB2	1425902_a_at 1429128_x_at	16780	-0.446	-0.5190	No
43	STAT5A	1421469_a_at 1450259_a_at	16987	-0.467	-0.5234	No
44	SYNGR2	1417081_a_at 1448577_x_at	17115	-0.480	-0.5240	No
45	SNN	1422310_at 1452789_at	17141	-0.483	-0.5200	No
46	ELL2	1450744_at 1458569_at	17670	-0.541	-0.5383	No
47	BLR1	1422003_at	18236	-0.615	-0.5575	No
48	RAC2	1417620_at 1440208_at	18302	-0.623	-0.5538	No
49	ICOSLG	1419212_at 1426087_at	18803	-0.698	-0.5692	No
50	TNF	1419607_at	19120	-0.750	-0.5755	Yes
51	PLXNC1	1423213_at 1423214_at 1443433_at 1443434_s_at 1450905_at 1450906_at	19166	-0.757	-0.5694	Yes
52	TMSB4X	1415906_at	19207	-0.768	-0.5630	Yes
53	EHD1	1416010_a_at 1416011_x_at 1416012_at 1448175_at	19541	-0.829	-0.5693	Yes
54	KCNN4	1421038_a_at 1435945_a_at	19562	-0.833	-0.5612	Yes
55	IRF5	1460231_at	19814	-0.887	-0.5631	Yes
56	PIK3CD	1422991_at 1422992_s_at 1443798_at 1453281_at 1458321_at	20105	-0.957	-0.5661	Yes
57	TNFAIP3	1433699_at 1450829_at	20369	-1.017	-0.5672	Yes
58	ADAM8	1416871_at	20521	-1.054	-0.5627	Yes
59	LITAF	1416303_at 1416304_at	20628	-1.087	-0.5558	Yes
60	TNFSF9	1422924_at	20676	-1.101	-0.5461	Yes
61	UNC119	1418123_at	20725	-1.123	-0.5362	Yes
62	NCKAP1L	1428786_at 1428787_at 1458516_at	20779	-1.146	-0.5263	Yes
63	CAPG	1447803_x_at 1450355_a_at	21021	-1.265	-0.5237	Yes
64	DDIT4	1428306_at	21169	-1.350	-0.5158	Yes
65	FAIM3	1429889_at	21186	-1.362	-0.5019	Yes
66	ZFP36L1	1422528_a_at 1450644_at	21264	-1.433	-0.4900	Yes
67	MTMR4	1418150_at 1418151_at 1459874_s_at	21289	-1.452	-0.4754	Yes
68	TCEB3	1422591_at 1434117_at 1450676_at	21292	-1.453	-0.4598	Yes
69	CD44	1423760_at 1434376_at 1443265_at 1452483_a_at	21365	-1.518	-0.4468	Yes
70	ICAM1	1424067_at	21412	-1.572	-0.4319	Yes
71	STK10	1417751_at 1459736_at	21460	-1.615	-0.4167	Yes
72	TMC6	1423770_at	21482	-1.642	-0.3999	Yes
73	IRF4	1421173_at 1421174_at	21520	-1.685	-0.3835	Yes
74	LTA	1420353_at	21540	-1.710	-0.3659	Yes
75	BATF	1419410_at	21644	-1.915	-0.3500	Yes
76	CD40	1439221_s_at 1449473_s_at 1460415_a_at	21666	-1.970	-0.3297	Yes
77	JUNB	1415899_at	21672	-1.992	-0.3084	Yes
78	DUSP2	1450698_at	21696	-2.054	-0.2873	Yes
79	TRAF1	1423602_at 1445452_at	21704	-2.081	-0.2652	Yes
80	CD74	1425519_a_at	21711	-2.114	-0.2427	Yes
81	IFI30	1422476_at	21770	-2.329	-0.2202	Yes
82	GADD45B	1420197_at 1449773_s_at 1450971_at	21794	-2.532	-0.1940	Yes
83	CD83	1416111_at	21863	-3.155	-0.1631	Yes
84	CCL22	1417925_at	21871	-3.238	-0.1285	Yes
85	EBI2	1437356_at 1457691_at	21881	-3.381	-0.0925	Yes
86	ISGF3G	1421322_a_at	21889	-3.496	-0.0551	Yes
87	CCR7	1423466_at	21924	-5.296	0.0005	Yes