Details for gene set GOLGI

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	GOLGI_APPARATUS
Enrichment Score (ES)	-0.39274117
Normalized Enrichment Score (NES)	-1.6612568
Nominal p-value	0.0
FDR q-value	0.53108335
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	KDELR2	1417204_at 1417205_at	77	6.312	0.0193	No
2	ARL1	1447089_at 1447090_s_at 1451025_at	407	4.152	0.0192	No
3	BNIP3	1422470_at	649	3.529	0.0209	No
4	LMAN1	1428129_at 1428130_at 1444037_at 1452671_s_at	763	3.320	0.0278	No
5	CHST5	1419320_at	1161	2.819	0.0197	No
6	SCYL3	1428918_at 1446655_at 1452960_at	1269	2.714	0.0246	No
7	GOLGA1	1431120_a_at 1432054_at 1435027_at 1446087_at	1470	2.519	0.0246	No
8	PCSK2	1428305_at 1444147_at 1447991_at 1447992_s_at 1448312_at	1652	2.365	0.0248	No
9	STIP1	1415909_at	2149	2.049	0.0094	No
10	CXCL14	1418456_a_at 1418457_at	2281	1.985	0.0106	No
11	GLCE	1425876_a_at 1428374_at 1440386_at	2350	1.958	0.0145	No
12	ARCN1	1423743_at 1436062_at 1444372_at 1451089_a_at	2438	1.924	0.0175	No
13	ITM2C	1415961_at	2533	1.883	0.0200	No
14	GKAP1	1417594_at	2607	1.857	0.0234	No
15	LAPTM4A	1423368_at	2776	1.797	0.0222	No
16	ENTPD4	1431761_at 1438177_x_at 1447900_x_at 1449190_a_at	2822	1.779	0.0265	No
17	RAB14	1415686_at 1419243_at 1419244_a_at 1419245_at 1419246_s_at 1439687_at 1441992_at	2995	1.722	0.0249	No
18	COG7	1443486_at	3669	1.515	-0.0006	No
19	AP3B2	1426927_at 1445224_at 1451837_at	3680	1.512	0.0044	No
20	YKT6	1448464_at 1460191_at	3760	1.493	0.0062	No
21	VAPB	1423152_at 1436079_s_at 1445370_at 1458501_at	3782	1.484	0.0106	No
22	OPTN	1429778_at 1435679_at	3834	1.468	0.0136	No
23	FUT4	1450834_at 1455843_at	3840	1.467	0.0187	No
24	COPG2	1448761_a_at	3958	1.437	0.0185	No
25	KIF20A	1449207_a_at	4038	1.412	0.0200	No
26	RAB11A	1449256_a_at	4062	1.405	0.0240	No
27	TMED10	1424707_at 1424708_at	4378	1.320	0.0143	No
28	SI	1422523_at	4553	1.268	0.0109	No
29	SLC30A5	1422497_at	4817	1.204	0.0032	No
30	STX5	1419952_at 1448267_at 1449679_s_at	4853	1.197	0.0059	No
31	PSEN2	1425869_a_at 1431542_at	4889	1.188	0.0086	No
32	RAB30	1426452_a_at	5013	1.158	0.0071	No
33	ACO1	1423644_at 1456728_x_at	5089	1.143	0.0078	No
34	MPHOSPH9	1419909_at 1419910_at 1431053_at 1438063_at 1440915_at 1449659_s_at	5168	1.130	0.0083	No
35	PTGDS	1423859_a_at 1423860_at	5232	1.117	0.0095	No
36	SECTM1	1419478_at 1419479_at	5359	1.095	0.0076	No
37	PSEN1	1420261_at 1421853_at 1425549_at 1450399_at	5624	1.041	-0.0007	No
38	FUT9	1435308_at 1450771_at 1457409_at	5782	1.012	-0.0043	No
39	COG8	1420265_x_at 1420266_at 1423617_at 1426821_at 1447860_x_at 1451052_at	5898	0.992	-0.0060	No
40	CLN5	1426886_at	5922	0.987	-0.0035	No
41	BET1	1416866_at 1416867_at	5940	0.984	-0.0007	No
42	COPB1	1423301_at	6018	0.969	-0.0007	No
43	COPG	1415670_at 1416017_at	6296	0.925	-0.0101	No
44	ARFIP1	1454916_s_at	6595	0.869	-0.0207	No
45	RAB6A	1447776_x_at 1448304_a_at 1448305_at	6613	0.866	-0.0183	No
46	COPB2	1452102_at 1456175_a_at	6673	0.854	-0.0179	No
47	NBEA	1452251_at	7166	0.769	-0.0378	No
48	PKN3	1434525_at	7169	0.769	-0.0351	No
49	DOPEY1	1435295_at 1442855_at	7230	0.757	-0.0351	No
50	KCNA5	1417680_at	7721	0.680	-0.0552	No
51	APH1A	1424979_at 1424980_s_at 1451554_a_at	7833	0.659	-0.0579	No
52	GOLGA5	1418447_at	8004	0.631	-0.0634	No
53	HOOK3	1443857_at 1446737_a_at	8028	0.627	-0.0622	No
54	B3GALT6	1421155_at 1435252_at 1440340_at	8075	0.618	-0.0621	No
55	PPT1	1420015_s_at 1420016_at 1422467_at 1422468_at 1444884_at	8155	0.607	-0.0635	No
56	MYO6	1421120_at 1433942_at 1435559_at	8210	0.598	-0.0638	No
57	KCNJ6	1421581_at 1425044_at 1425707_a_at 1450294_a_at 1451868_at	8344	0.579	-0.0678	No
58	GOPC	1421191_s_at 1450153_at 1453221_at	8480	0.558	-0.0720	No
59	RER1	1460660_x_at 1460706_s_at	8585	0.540	-0.0749	No
60	HIP1	1424755_at 1424756_at 1432017_at 1432230_at 1434557_at 1444873_at	8606	0.536	-0.0738	No
61	FUT1	1450359_at	8611	0.535	-0.0721	No
62	PLD1	1425739_at 1437112_at 1437113_s_at	8767	0.512	-0.0774	No
63	GLA	1418248_at 1449006_at	8779	0.510	-0.0760	No
64	SLC35A3	1424579_at 1424580_at 1429648_at 1429649_at	8835	0.498	-0.0767	No
65	FUT10	1427617_at 1437388_at 1454924_at	9233	0.438	-0.0934	No
66	PAMCI	1427942_at	9338	0.423	-0.0967	No
67	NTSR1	1420799_at	9461	0.406	-0.1008	No
68	SEC14L1	1451908_a_at 1453412_a_at	9469	0.405	-0.0997	No
69	AP3B1	1423235_at 1450915_at	9961	0.328	-0.1211	No
70	MAN1C1	1436193_at	9963	0.327	-0.1199	No
71	CHST4	1453393_a_at	10021	0.318	-0.1214	No
72	ATP7B	1421563_at 1446004_at 1450283_at	10162	0.298	-0.1268	No
73	FGD4	1425037_at 1426041_a_at 1426042_at 1451659_at 1455337_at	10302	0.274	-0.1322	No
74	COPZ1	1447834_at 1451825_a_at	10358	0.265	-0.1337	No
75	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	10413	0.258	-0.1353	No
76	AP3D1	1417964_at 1445280_at	10426	0.256	-0.1349	No
77	COG5	1435298_at 1445806_at	10486	0.246	-0.1367	No
78	BACE1	1421824_at 1421825_at 1436956_at 1450384_at 1455826_a_at	10554	0.236	-0.1389	No
79	STX16	1429237_at	10719	0.212	-0.1457	No
80	PKMYT1	1418481_at 1438601_at	10847	0.193	-0.1509	No
81	DNM1L	1428008_at 1428086_at 1428087_at 1452638_s_at	11032	0.165	-0.1587	No
82	PCSK5	1424605_at 1437339_s_at 1438248_at 1451406_a_at 1452475_at 1459124_at	11077	0.158	-0.1602	No
83	SLC35B2	1423927_at 1429007_at	11282	0.126	-0.1691	No
84	GOSR1	1416215_at 1448256_at	11290	0.125	-0.1690	No
85	TYR	1417717_a_at 1448821_at 1456095_at	11309	0.121	-0.1694	No
86	STEAP2	1428636_at 1438773_at 1442359_at 1444290_at 1446071_at	11352	0.115	-0.1709	No
87	ATXN2	1419866_s_at 1438143_s_at 1438144_x_at 1443516_at 1459363_at 1460653_at	11424	0.105	-0.1738	No
88	M6PRBP1	1416424_at	11445	0.104	-0.1743	No
89	VAMP4	1422895_at 1422896_at 1434796_at	11486	0.096	-0.1758	No
90	FUT7	1420756_at	11554	0.087	-0.1786	No
91	UNC13B	1417757_at 1443308_at	11758	0.053	-0.1877	No
92	HS3ST1	1423450_a_at	11786	0.048	-0.1888	No
93	DYNC2H1	1429250_at	11802	0.044	-0.1893	No
94	RAB36	1431136_at 1436471_at 1455064_at	11812	0.043	-0.1896	No
95	AP1G1	1423388_at 1434081_at 1460658_at 1460712_s_at	11956	0.021	-0.1961	No
96	AP3S2	1422718_at 1428044_at 1435718_at 1436525_at 1441993_at 1444413_at	12081	0.003	-0.2018	No
97	ANK3	1425202_a_at 1439220_at 1447259_at 1451628_a_at 1457288_at	12400	-0.053	-0.2162	No
98	FGD5	1460578_at	12505	-0.072	-0.2207	No
99	TMEM43	1426434_at 1439418_x_at	12552	-0.082	-0.2225	No
100	SLC35A1	1417538_at 1417539_at	12607	-0.092	-0.2247	No
101	FGD1	1416865_at 1437369_at 1459278_at	12688	-0.103	-0.2280	No
102	LDLRAP1	1424378_at 1457162_at	12866	-0.133	-0.2357	No
103	SPG21	1451036_at	13036	-0.164	-0.2428	No
104	CORO7	1428147_at 1428148_s_at 1428149_at 1428150_at 1437146_x_at 1437524_x_at	13108	-0.175	-0.2455	No
105	GOLGB1	1433135_at 1435032_at 1460535_at	13141	-0.179	-0.2463	No
106	FGD2	1419515_at	13161	-0.183	-0.2465	No
107	OPRM1	1425432_at 1441791_at 1451705_a_at 1451709_at 1459402_at	13288	-0.205	-0.2516	No
108	CSPG5	1450713_at	13345	-0.214	-0.2534	No
109	FGD6	1419322_at 1435467_at	13413	-0.225	-0.2556	No
110	CLN3	1417551_at 1457789_at	13611	-0.260	-0.2637	No
111	IL15	1418219_at	13712	-0.280	-0.2673	No
112	CEP57	1428968_at 1452983_at	13788	-0.291	-0.2697	No
113	CAV1	1449145_a_at	14284	-0.376	-0.2911	No
114	GOLGA3	1419159_at 1419160_at 1449616_s_at	14405	-0.400	-0.2952	No
115	ATP1A3	1424856_at 1427481_a_at	14421	-0.403	-0.2944	No
116	ACHE	1422635_at	14476	-0.415	-0.2954	No
117	GGA2	1428141_at 1457955_at	14757	-0.470	-0.3066	No
118	COG1	1418354_at 1433774_x_at 1437844_x_at 1449053_s_at 1456740_x_at	14900	-0.501	-0.3113	No
119	FUT2	1434862_at 1450246_at	15112	-0.546	-0.3190	No
120	FGD3	1433398_at 1450235_at 1454593_at	15276	-0.579	-0.3244	No
121	ICA1	1417901_a_at 1431644_a_at	15350	-0.593	-0.3256	No
122	MALL	1425359_at 1435693_at	15455	-0.614	-0.3282	No
123	A2BP1	1418314_a_at 1438217_at 1447735_x_at 1455358_at 1456921_at	16036	-0.748	-0.3522	No
124	RGS19	1417786_a_at 1434940_x_at	16120	-0.768	-0.3532	No
125	AVPR2	1450277_at	16202	-0.787	-0.3541	No
126	CHST2	1422758_at 1460070_at	16435	-0.845	-0.3617	No
127	GNAS	1421740_at 1427789_s_at 1443007_at 1443375_at 1444767_at 1450186_s_at 1453413_at	16450	-0.849	-0.3592	No
128	GOLGA4	1417674_s_at 1448803_at 1460213_at	16590	-0.881	-0.3624	No
129	RHOT1	1423533_a_at 1440853_at	16655	-0.899	-0.3621	No
130	CHST10	1426620_at	16765	-0.929	-0.3638	No
131	TMEM10	1435854_at 1447487_at	16882	-0.953	-0.3657	No
132	GGA1	1423834_s_at 1459863_x_at	16922	-0.961	-0.3640	No
133	COPE	1416384_a_at	17283	-1.034	-0.3768	No
134	F2RL1	1448931_at	17291	-1.035	-0.3734	No
135	TAPBP	1421812_at 1450378_at	17595	-1.113	-0.3833	No
136	PRNP	1416130_at 1446507_at 1448233_at	17656	-1.129	-0.3819	No
137	GALNT4	1423637_at 1423638_at 1447318_at 1455915_at 1457849_at	17661	-1.130	-0.3780	No
138	RPGR	1427467_a_at	17703	-1.140	-0.3758	No
139	PICK1	1419384_at	17845	-1.186	-0.3780	No
140	KIF1C	1424747_at 1426325_at	17879	-1.196	-0.3751	No
141	AP4M1	1418846_at	18013	-1.238	-0.3768	No
142	ATP7A	1418774_a_at 1436921_at	18119	-1.271	-0.3770	No
143	GLG1	1417087_at 1448579_at 1448580_at 1460554_s_at	18166	-1.286	-0.3745	No
144	ADAM10	1450104_at 1460083_at	18526	-1.414	-0.3858	No
145	CLASP2	1424836_a_at 1427328_a_at 1429976_at 1440802_at 1441726_at 1443320_at 1456911_at	18543	-1.424	-0.3814	No
146	AP4B1	1416631_at 1421726_at	18570	-1.434	-0.3774	No
147	B3GALT5	1428397_at 1428398_at 1450528_at 1459801_at	18904	-1.581	-0.3870	Yes
148	COPA	1415706_at 1437274_at	18909	-1.587	-0.3814	Yes
149	TRAPPC4	1415674_a_at 1429632_at	18914	-1.589	-0.3759	Yes
150	COG3	1434654_at 1456286_at	18975	-1.614	-0.3728	Yes
151	SYNE1	1421545_a_at 1455225_at 1455493_at	19165	-1.692	-0.3753	Yes
152	PARK2	1420755_a_at 1426135_a_at 1449975_a_at	19174	-1.694	-0.3696	Yes
153	SLC35B4	1416548_at 1416549_at 1416550_at 1431941_at	19211	-1.710	-0.3650	Yes
154	OCRL	1438284_at 1438396_at 1457313_at	19429	-1.814	-0.3684	Yes
155	B4GALT1	1418014_a_at 1458616_at 1458773_at	19447	-1.825	-0.3626	Yes
156	AP1S1	1416087_at	19580	-1.906	-0.3618	Yes
157	F2R	1437308_s_at 1450852_s_at	19581	-1.907	-0.3549	Yes
158	EXT1	1417730_at 1439877_at 1440011_at 1440092_at 1456655_at 1458054_at 1458296_at	19593	-1.916	-0.3484	Yes
159	FURIN	1418518_at	19626	-1.944	-0.3429	Yes
160	CALU	1415870_at 1441477_at	19801	-2.075	-0.3433	Yes
161	STS	1421500_at	19816	-2.091	-0.3364	Yes
162	COG2	1416932_at	19898	-2.164	-0.3323	Yes
163	LARGE	1417435_at 1417436_at 1441642_at 1442420_at 1443212_at 1458663_at	19917	-2.184	-0.3252	Yes
164	LMAN2L	1435475_at 1441295_at	19929	-2.192	-0.3178	Yes
165	TRIM23	1426969_at 1429998_at 1456089_at	20038	-2.287	-0.3145	Yes
166	SACM1L	1416500_at 1438900_at	20056	-2.300	-0.3069	Yes
167	CLCN3	1416610_a_at 1433486_at 1433487_at 1438366_x_at	20138	-2.375	-0.3020	Yes
168	CLASP1	1427353_at 1452265_at 1459233_at 1460102_at	20146	-2.378	-0.2937	Yes
169	AP1G2	1419113_at	20203	-2.420	-0.2875	Yes
170	MAP4K2	1428297_at 1434833_at 1450244_a_at	20211	-2.423	-0.2791	Yes
171	GOLGA2	1448625_at	20271	-2.469	-0.2729	Yes
172	PAK4	1428548_at	20527	-2.735	-0.2747	Yes
173	COG6	1426216_at	20601	-2.827	-0.2678	Yes
174	ZFYVE1	1435071_at 1435072_at	20613	-2.847	-0.2580	Yes
175	COG4	1416993_at 1419808_at 1419809_s_at 1443135_at	20700	-2.966	-0.2512	Yes
176	RAB1B	1424064_at	20788	-3.081	-0.2440	Yes
177	PSENEN	1415679_at	20843	-3.182	-0.2350	Yes
178	ABCG1	1423570_at 1455221_at	20857	-3.206	-0.2240	Yes
179	PCSK7	1417180_at	20917	-3.310	-0.2147	Yes
180	AP1GBP1	1435215_at 1442344_at 1457695_at	21006	-3.474	-0.2061	Yes
181	TSC2	1452105_a_at	21008	-3.475	-0.1936	Yes
182	FIS1	1416764_at 1443819_x_at	21029	-3.513	-0.1818	Yes
183	CENTD2	1428064_at	21050	-3.561	-0.1698	Yes
184	BET1L	1422980_a_at 1426372_a_at 1430549_at 1453570_x_at	21177	-3.798	-0.1618	Yes
185	RHOT2	1426822_at	21256	-3.972	-0.1510	Yes
186	EXT2	1447319_at 1447743_x_at 1460170_at	21269	-4.003	-0.1371	Yes
187	SNX17	1455955_s_at	21403	-4.357	-0.1274	Yes
188	IGF2R	1424111_at 1424112_at 1440979_at 1445966_at 1457356_at	21445	-4.484	-0.1131	Yes
189	GGA3	1438008_at	21589	-5.107	-0.1011	Yes
190	GBF1	1415709_s_at 1415757_at 1432677_at 1438207_at	21633	-5.408	-0.0835	Yes
191	DOPEY2	1428330_at 1449904_at	21648	-5.506	-0.0642	Yes
192	ATP2C1	1431196_at 1434386_at 1437738_at 1439215_at 1442742_at	21738	-6.260	-0.0456	Yes
193	B4GALT7	1426303_at 1426304_x_at	21758	-6.462	-0.0231	Yes
194	NCSTN	1418570_at 1444532_at	21863	-8.594	0.0033	Yes