Details for gene set V$NFKB

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	V$NFKB_C
Enrichment Score (ES)	-0.36724466
Normalized Enrichment Score (NES)	-1.5566385
Nominal p-value	0.0016556291
FDR q-value	0.12914954
FWER p-Value	0.797

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ARHGAP8	1451463_at	687	3.452	-0.0193	No
2	ENO3	1417951_at 1449631_at	745	3.349	-0.0100	No
3	PAPPA	1427633_a_at 1432591_at 1432592_at 1459375_at	760	3.322	0.0012	No
4	ID2	1422537_a_at 1435176_a_at 1453596_at	1066	2.929	-0.0025	No
5	ZADH2	1451277_at	1296	2.678	-0.0035	No
6	CD74	1425519_a_at	1454	2.533	-0.0017	No
7	PCSK2	1428305_at 1444147_at 1447991_at 1447992_s_at 1448312_at	1652	2.365	-0.0023	No
8	PTHLH	1422324_a_at 1427527_a_at	1776	2.281	0.0001	No
9	SOX3	1435192_at 1450485_at	1921	2.177	0.0013	No
10	BMF	1422995_at 1454880_s_at 1458325_x_at	1924	2.173	0.0089	No
11	EDG5	1428176_at 1447880_x_at	2089	2.081	0.0088	No
12	TCEA2	1418107_at 1440791_x_at	2102	2.078	0.0156	No
13	IL2RA	1420691_at 1420692_at	2105	2.077	0.0229	No
14	GRK5	1446361_at 1446998_at 1449514_at	2835	1.773	-0.0043	No
15	ARHGAP5	1423194_at 1450896_at 1450897_at 1457410_at	3073	1.699	-0.0092	No
16	IL13	1420802_at	3078	1.697	-0.0033	No
17	XPO6	1422759_a_at 1440492_at 1443737_at	3171	1.672	-0.0016	No
18	BLR1	1422003_at	3349	1.621	-0.0040	No
19	SEMA3B	1416644_a_at 1431795_a_at 1448415_a_at	3352	1.619	0.0017	No
20	SEC14L2	1424530_at	3468	1.578	0.0020	No
21	MSC	1418417_at	3487	1.570	0.0068	No
22	LRRFIP2	1436378_at 1436510_a_at	3637	1.523	0.0053	No
23	PCBP4	1433658_x_at 1449054_a_at 1449055_x_at	3818	1.472	0.0023	No
24	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	4066	1.403	-0.0041	No
25	BHLHB2	1418025_at	4094	1.397	-0.0003	No
26	ANP32A	1421918_at 1434555_at 1450407_a_at	4095	1.397	0.0046	No
27	IFNB1	1422305_at	4139	1.383	0.0076	No
28	EIF5A	1437859_x_at 1451470_s_at	4180	1.373	0.0106	No
29	UACA	1452985_at	4243	1.354	0.0126	No
30	MSX1	1417127_at 1448601_s_at	4402	1.315	0.0100	No
31	FOXD2	1450289_at	4958	1.171	-0.0114	No
32	PLP1	1425467_a_at 1425468_at 1451718_at	4962	1.171	-0.0073	No
33	DNAJA1	1416288_at 1437220_x_at 1445729_at 1459835_s_at 1460179_at	4998	1.162	-0.0048	No
34	DCAMKL1	1423125_at 1424270_at 1424271_at 1436659_at 1446190_at 1450863_a_at 1451289_at 1451917_a_at	5227	1.117	-0.0113	No
35	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	5266	1.113	-0.0091	No
36	SMPD3	1422779_at 1438665_at 1445759_at 1450748_at	5304	1.104	-0.0069	No
37	CGGBP1	1454641_at 1455658_at	5331	1.099	-0.0042	No
38	BAI2	1435558_at	5627	1.041	-0.0140	No
39	NDRG2	1448154_at	5736	1.020	-0.0154	No
40	GNAO1	1421152_a_at 1448031_at 1460383_at	5771	1.014	-0.0133	No
41	SP6	1427786_at 1427787_at 1437788_at 1442342_at	5926	0.987	-0.0169	No
42	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	6050	0.964	-0.0191	No
43	LAMB3	1417812_a_at	6678	0.853	-0.0449	No
44	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	6931	0.812	-0.0537	No
45	FGF17	1421523_at 1456239_at	7134	0.773	-0.0602	No
46	GPHN	1426462_at 1426463_at 1430038_at 1444869_at 1445188_at 1458242_at	7272	0.752	-0.0638	No
47	EHF	1419474_a_at 1419475_a_at 1447760_x_at 1451375_at	7586	0.701	-0.0757	No
48	IL1RN	1423017_a_at 1425663_at 1451798_at	7646	0.691	-0.0760	No
49	DDR1	1415797_at 1415798_at 1435820_x_at 1437619_x_at 1438367_x_at 1439382_x_at 1456226_x_at 1459990_at	7799	0.667	-0.0806	No
50	BCL3	1418133_at	7849	0.658	-0.0805	No
51	SCRT2	1440930_a_at 1440931_at 1446986_at 1457310_x_at	7877	0.652	-0.0794	No
52	DACH2	1449823_at 1458012_at	8138	0.609	-0.0892	No
53	CTGF	1416953_at	8201	0.600	-0.0899	No
54	CLCN1	1427591_at 1448082_at	8273	0.588	-0.0911	No
55	MAML2	1446570_at 1447546_s_at	8308	0.584	-0.0906	No
56	MAP3K13	1430137_at 1440749_at 1447699_at	8366	0.575	-0.0912	No
57	CDH5	1422047_at 1433956_at	8401	0.568	-0.0907	No
58	CDC37	1416819_at 1416820_at	8430	0.565	-0.0900	No
59	FOXD3	1422210_at	8439	0.564	-0.0884	No
60	TSLP	1450004_at	8467	0.560	-0.0876	No
61	PURG	1424970_at 1452029_a_at	8478	0.558	-0.0861	No
62	IL1A	1421473_at	8608	0.535	-0.0901	No
63	TRIM47	1426784_at	8662	0.526	-0.0907	No
64	LIN28	1437752_at	8700	0.521	-0.0905	No
65	VNN3	1420723_at	8752	0.514	-0.0911	No
66	FGF1	1423136_at 1441042_at 1450869_at	8923	0.484	-0.0971	No
67	EGF	1418093_a_at	9052	0.465	-0.1014	No
68	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	9520	0.398	-0.1215	No
69	KCNQ5	1427426_at 1441071_at	9790	0.354	-0.1326	No
70	PTGS2	1417262_at 1417263_at	9972	0.326	-0.1397	No
71	ASCL3	1420780_at	10000	0.322	-0.1398	No
72	TRIB2	1426640_s_at 1426641_at 1459852_x_at	10022	0.318	-0.1397	No
73	PRKCD	1422847_a_at 1442256_at	10621	0.228	-0.1664	No
74	ALG6	1439007_at 1459337_at	11176	0.141	-0.1914	No
75	RALGDS	1460634_at	11301	0.123	-0.1966	No
76	JPH3	1418161_at 1443724_at	11304	0.122	-0.1963	No
77	RGL1	1418535_at 1440662_at 1449124_at	11305	0.122	-0.1958	No
78	GNA13	1422555_s_at 1422556_at 1430295_at 1433749_at 1446722_at 1450656_at 1453470_a_at 1460317_s_at	11481	0.097	-0.2036	No
79	CHD4	1436343_at 1438476_a_at 1451295_a_at	11494	0.095	-0.2038	No
80	MRPS6	1424440_at 1447585_s_at	11517	0.092	-0.2045	No
81	FUT7	1420756_at	11554	0.087	-0.2058	No
82	NFKBIB	1421266_s_at 1446718_at	11779	0.050	-0.2159	No
83	HOXA11	1420414_at	11866	0.035	-0.2198	No
84	AGC1	1449827_at	11868	0.035	-0.2197	No
85	GRIN2D	1421393_at	11881	0.033	-0.2201	No
86	JAK3	1425750_a_at 1446515_at	11975	0.019	-0.2243	No
87	SLC6A12	1449382_at	12058	0.006	-0.2281	No
88	RAD18	1423318_at 1435826_at 1443954_at 1451928_a_at	12100	-0.001	-0.2300	No
89	BCKDK	1443813_x_at 1460644_at	12325	-0.038	-0.2401	No
90	TSNAXIP1	1427018_at	12359	-0.045	-0.2415	No
91	EGR3	1421486_at 1436329_at	12466	-0.064	-0.2461	No
92	HOXB9	1452317_at	12579	-0.087	-0.2510	No
93	WNT10A	1460657_at	12698	-0.104	-0.2560	No
94	LCN2	1427747_a_at	12778	-0.120	-0.2592	No
95	ITGB8	1436223_at	12842	-0.129	-0.2617	No
96	ECT2	1419513_a_at	12865	-0.133	-0.2622	No
97	UBE2I	1422712_a_at 1422713_a_at 1425478_x_at 1453189_at	12987	-0.154	-0.2672	No
98	CXCL10	1418930_at	13079	-0.171	-0.2708	No
99	CCDC8	1444761_at	13232	-0.195	-0.2771	No
100	SOX10	1424985_a_at 1425369_a_at 1451689_a_at	13243	-0.198	-0.2769	No
101	HOXB6	1451660_a_at	13265	-0.201	-0.2771	No
102	SNAP25	1416828_at 1443398_at	13366	-0.217	-0.2810	No
103	FOXA3	1431900_a_at	13380	-0.219	-0.2808	No
104	OPCML	1435612_at 1442752_at 1457446_at 1458228_at	13840	-0.298	-0.3008	No
105	ARPC5	1444568_at 1448129_at	13964	-0.320	-0.3054	No
106	EFNA3	1431170_at 1455344_at	13981	-0.323	-0.3049	No
107	RIN2	1426368_at 1441209_at 1442829_at	14116	-0.344	-0.3099	No
108	LCAT	1417043_at	14242	-0.370	-0.3143	No
109	CENTB5	1439021_at	14406	-0.400	-0.3204	No
110	RHOA	1437628_s_at	14467	-0.413	-0.3217	No
111	DUSP22	1441723_at 1448985_at	14742	-0.468	-0.3326	No
112	RAB10	1422664_at 1429296_at 1442463_at 1453095_at	14755	-0.470	-0.3315	No
113	DAP3	1450848_at	14776	-0.475	-0.3307	No
114	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	14815	-0.482	-0.3308	No
115	C1QL1	1422777_at	14878	-0.496	-0.3319	No
116	TNFSF7	1449926_at	15069	-0.536	-0.3387	No
117	WRN	1425074_at 1425982_a_at 1450163_a_at	15086	-0.541	-0.3375	No
118	IL23A	1419529_at	15145	-0.551	-0.3382	No
119	SMARCAD1	1435651_a_at 1440066_at 1452276_at	15220	-0.567	-0.3396	No
120	MAP3K8	1419208_at	15282	-0.580	-0.3403	No
121	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	15498	-0.625	-0.3480	No
122	IL4I1	1419192_at	15550	-0.636	-0.3481	No
123	CHX10	1419628_at	15575	-0.644	-0.3469	No
124	PLA1A	1417785_at	15600	-0.650	-0.3457	No
125	MNT	1418192_at	15763	-0.683	-0.3507	No
126	HSD3B7	1416968_a_at 1442912_at	15928	-0.721	-0.3557	No
127	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	15962	-0.730	-0.3546	No
128	TYRO3	1425248_a_at 1425249_a_at	16134	-0.772	-0.3597	No
129	LYPLA2	1417433_at	16163	-0.778	-0.3582	No
130	FOS	1423100_at	16185	-0.784	-0.3564	No
131	AMOTL1	1428785_at 1431121_at 1446909_at 1455247_at	16242	-0.797	-0.3562	No
132	RND1	1455197_at	16421	-0.842	-0.3614	No
133	SLC34A3	1439519_at	16529	-0.866	-0.3632	No
134	VCAM1	1415989_at 1436003_at 1448162_at 1451314_a_at	16618	-0.890	-0.3641	Yes
135	BCL2L1	1420887_a_at 1420888_at 1426050_at 1426191_a_at	16654	-0.899	-0.3625	Yes
136	COL11A2	1423578_at	16671	-0.905	-0.3600	Yes
137	TCTA	1420123_at 1420124_s_at 1420125_at 1424068_at	16752	-0.927	-0.3604	Yes
138	IL1RAPL1	1445821_at 1458964_at	16777	-0.932	-0.3582	Yes
139	CUEDC1	1425920_at 1435358_at 1443455_at 1451447_at	16800	-0.935	-0.3559	Yes
140	RAP2C	1428119_a_at 1437016_x_at 1460430_at	16839	-0.945	-0.3542	Yes
141	GABPB2	1440289_at 1440868_at 1443942_at 1453682_at 1455110_at	16894	-0.956	-0.3533	Yes
142	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	16915	-0.960	-0.3508	Yes
143	NLK	1419112_at 1435970_at 1443279_at 1445427_at 1456467_s_at	17047	-0.988	-0.3533	Yes
144	TAL1	1449389_at	17056	-0.990	-0.3502	Yes
145	HCFC1	1421972_s_at 1433736_at 1445688_at 1446868_at 1450439_at 1457875_at	17236	-1.027	-0.3548	Yes
146	NUP153	1441689_at 1441733_s_at 1452176_at	17323	-1.041	-0.3550	Yes
147	SIX5	1427560_at	17350	-1.048	-0.3525	Yes
148	LASP1	1438633_x_at 1438634_x_at 1439264_x_at 1444947_at 1448207_at 1455470_x_at 1456309_x_at 1456469_x_at 1456578_x_at 1460173_at	17375	-1.056	-0.3498	Yes
149	RHOG	1422572_at	17572	-1.109	-0.3549	Yes
150	PHF6	1430415_at 1453761_at 1454625_at	17627	-1.123	-0.3534	Yes
151	CDC14A	1436913_at 1443184_at 1446493_at 1459517_at	17694	-1.138	-0.3524	Yes
152	RANBP10	1424584_a_at 1424585_at 1446446_at	17936	-1.214	-0.3591	Yes
153	S100A10	1416762_at 1439348_at 1456642_x_at	17974	-1.228	-0.3565	Yes
154	CCL22	1417925_at	18085	-1.262	-0.3570	Yes
155	SIRT2	1423507_a_at	18151	-1.281	-0.3555	Yes
156	STAT6	1421708_a_at 1426353_at	18205	-1.300	-0.3533	Yes
157	MAG	1460219_at	18242	-1.312	-0.3503	Yes
158	FLI1	1422024_at 1433512_at 1441584_at	18391	-1.366	-0.3522	Yes
159	SESN2	1425139_at 1451599_at	18407	-1.371	-0.3480	Yes
160	ASH1L	1420985_at 1441117_at 1450071_at 1450072_at	18417	-1.373	-0.3436	Yes
161	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	18534	-1.418	-0.3438	Yes
162	SLAMF8	1425294_at	18573	-1.435	-0.3405	Yes
163	IL27RA	1449508_at	18618	-1.456	-0.3373	Yes
164	IRF1	1448436_a_at	18702	-1.496	-0.3358	Yes
165	CYLD	1429617_at 1429618_at 1445213_at	18770	-1.524	-0.3335	Yes
166	PPP2R5E	1428461_at 1428462_at 1428463_a_at 1439401_x_at 1443533_at 1443949_at 1446356_at 1452788_at	18837	-1.551	-0.3310	Yes
167	SYMPK	1428673_at	18863	-1.565	-0.3266	Yes
168	ZHX2	1455210_at	18906	-1.585	-0.3229	Yes
169	MOBKL2C	1440919_at 1459919_a_at	18948	-1.601	-0.3191	Yes
170	GATA4	1418863_at 1418864_at 1441364_at	19022	-1.628	-0.3166	Yes
171	PIGC	1424189_at 1424190_at	19077	-1.652	-0.3132	Yes
172	PTGES	1439747_at 1449449_at 1449450_at	19079	-1.653	-0.3074	Yes
173	SNX15	1424337_at 1456649_at 1458021_at	19483	-1.846	-0.3194	Yes
174	LRCH1	1438032_at 1442502_at 1442757_at 1445396_at 1447746_at 1459150_at	19666	-1.971	-0.3207	Yes
175	IL18R1	1421628_at	19719	-2.019	-0.3159	Yes
176	GNG4	1417943_at 1417944_at 1447669_s_at	19838	-2.112	-0.3138	Yes
177	PFN1	1449018_at	19877	-2.140	-0.3080	Yes
178	IER5	1417612_at 1417613_at	19964	-2.221	-0.3040	Yes
179	BDNF	1422168_a_at 1422169_a_at	20032	-2.284	-0.2990	Yes
180	ITGB4	1427387_a_at	20070	-2.313	-0.2924	Yes
181	ICAM1	1424067_at	20213	-2.427	-0.2903	Yes
182	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	20588	-2.811	-0.2975	Yes
183	NFKB2	1425902_a_at 1429128_x_at	20604	-2.837	-0.2881	Yes
184	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	20642	-2.880	-0.2796	Yes
185	BAHD1	1433703_s_at	21028	-3.512	-0.2848	Yes
186	TAZ	1416207_at 1453785_at	21053	-3.577	-0.2732	Yes
187	USP52	1426700_a_at	21068	-3.599	-0.2610	Yes
188	GADD45B	1420197_at 1449773_s_at 1450971_at	21203	-3.850	-0.2535	Yes
189	UNC84B	1433832_at 1439238_at	21316	-4.110	-0.2440	Yes
190	DDX17	1437773_x_at 1439037_at 1452155_a_at	21379	-4.262	-0.2317	Yes
191	FOXJ2	1420373_at 1420374_at	21470	-4.544	-0.2197	Yes
192	TNIP1	1427689_a_at	21579	-5.049	-0.2067	Yes
193	RORC	1425792_a_at 1425793_a_at	21623	-5.306	-0.1897	Yes
194	SLC43A1	1440007_at 1453255_at	21694	-5.787	-0.1724	Yes
195	SMOC1	1448321_at	21812	-7.366	-0.1515	Yes
196	CCL5	1418126_at	21823	-7.580	-0.1250	Yes
197	LTB	1419135_at	21848	-8.312	-0.0965	Yes
198	EPHB6	1418051_at	21862	-8.587	-0.0666	Yes
199	EGR2	1427682_a_at 1427683_at	21881	-9.155	-0.0348	Yes
200	PPP1R13B	1434895_s_at 1442956_at 1459224_at	21924	-10.457	0.0005	Yes