Details for gene set V$LFA1

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_SCID.phenotype_ATM_minus_versus_SCID.cls #ATM_minus_versus_SCID
Phenotype	phenotype_ATM_minus_versus_SCID.cls#ATM_minus_versus_SCID
Upregulated in class	SCID
GeneSet	V$LFA1_Q6
Enrichment Score (ES)	-0.31364495
Normalized Enrichment Score (NES)	-1.3328819
Nominal p-value	0.024523161
FDR q-value	0.71004945
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	NPC2	1416901_at 1443266_at 1448513_a_at 1455768_at	525	2.754	-0.0049	No
2	ADM	1416077_at 1447839_x_at	607	2.579	0.0094	No
3	UBL3	1423461_a_at	766	2.290	0.0181	No
4	NR4A1	1416505_at	889	2.108	0.0272	No
5	PNOC	1425892_a_at	936	2.045	0.0394	No
6	NPAS3	1421567_at 1429138_at 1438060_at 1450287_at	1237	1.774	0.0380	No
7	GAD1	1416561_at 1416562_at	1321	1.726	0.0462	No
8	TPCN1	1434930_at 1451771_at 1451772_at	1602	1.559	0.0443	No
9	BAX	1416837_at	1621	1.549	0.0543	No
10	ZFP36	1452519_a_at	1634	1.540	0.0645	No
11	RAB31	1416165_at 1431691_a_at	2136	1.295	0.0505	No
12	ARHGEF15	1440358_at 1455522_at 1457172_at	2201	1.267	0.0564	No
13	TCF7	1433471_at 1450461_at	2291	1.227	0.0609	No
14	UPF2	1435030_at 1445777_at	2310	1.220	0.0686	No
15	RABGGTA	1426046_a_at	2463	1.167	0.0697	No
16	ROM1	1448996_at	2631	1.120	0.0699	No
17	KCNQ4	1435721_at 1442909_at	2642	1.117	0.0772	No
18	NEURL	1422251_at 1451872_a_at 1453527_a_at 1456854_at 1458561_at 1460343_at	2880	1.052	0.0737	No
19	GRIN2A	1421616_at	2982	1.028	0.0762	No
20	LAG3	1449911_at	3037	1.016	0.0808	No
21	WNT4	1450782_at	3104	1.003	0.0848	No
22	LRP8	1421459_a_at 1440882_at 1442347_at	3494	0.923	0.0733	No
23	ANXA4	1421223_a_at 1424176_a_at 1443341_at 1457658_x_at	3548	0.912	0.0773	No
24	KIF1C	1424747_at 1426325_at	3557	0.910	0.0833	No
25	LMOD3	1439658_at	3579	0.904	0.0886	No
26	BACE1	1421824_at 1421825_at 1436956_at 1450384_at 1455826_a_at	3691	0.880	0.0897	No
27	OTOP2	1443043_at	3779	0.861	0.0917	No
28	PCBP2	1421743_a_at 1435881_at	4061	0.808	0.0844	No
29	CHX10	1419628_at	4159	0.791	0.0855	No
30	SLC13A5	1459729_at	4169	0.789	0.0906	No
31	STOML2	1448774_at	4201	0.783	0.0946	No
32	MRPL40	1448849_at	4550	0.718	0.0836	No
33	S100A5	1449927_at	4598	0.707	0.0864	No
34	CAV1	1449145_a_at	4775	0.679	0.0831	No
35	MSX1	1417127_at 1448601_s_at	4805	0.673	0.0864	No
36	NRGN	1423231_at	4837	0.668	0.0897	No
37	NGFB	1419675_at	4936	0.651	0.0897	No
38	HBLD1	1424154_a_at	5160	0.613	0.0837	No
39	NEUROG1	1438551_at 1450836_at	5295	0.594	0.0817	No
40	PPY	1420440_at	5349	0.587	0.0834	No
41	IFRD2	1451016_at	5395	0.581	0.0854	No
42	NKX2-3	1425827_at 1427741_x_at 1452528_a_at	5449	0.572	0.0869	No
43	POLD4	1427885_at	5810	0.525	0.0741	No
44	SALL1	1450489_at	5869	0.517	0.0750	No
45	FES	1427368_x_at 1452410_a_at	5969	0.505	0.0740	No
46	BCL11B	1440137_at 1441762_at 1450339_a_at	5997	0.502	0.0762	No
47	JPH4	1439031_at	6186	0.479	0.0709	No
48	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	6670	0.421	0.0517	No
49	LIN28	1437752_at	6705	0.418	0.0530	No
50	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	7091	0.376	0.0380	No
51	PALM	1422034_a_at 1423967_at 1439927_at 1457217_at	7107	0.374	0.0399	No
52	POU4F1	1429667_at 1429668_at	7115	0.374	0.0422	No
53	PSD	1435780_at	7321	0.351	0.0352	No
54	ACCN1	1417994_a_at	7585	0.323	0.0254	No
55	CLIC5	1431261_at 1439505_at 1456873_at 1458381_at	7666	0.316	0.0239	No
56	SLC25A29	1423979_a_at 1423980_at 1423981_x_at 1438187_at 1438188_x_at	7845	0.300	0.0178	No
57	TUBA4	1417373_a_at 1417374_at 1417375_at	7961	0.290	0.0146	No
58	GBA2	1419980_at 1434271_at	8015	0.285	0.0141	No
59	ARID4A	1436191_at 1438464_at 1456420_at	8177	0.269	0.0086	No
60	RASL12	1428067_at	8179	0.269	0.0104	No
61	PLA2G4D	1453405_at	8695	0.217	-0.0117	No
62	HOXC6	1427361_at 1427362_x_at 1427454_at	8955	0.194	-0.0223	No
63	FXYD3	1418374_at	9009	0.189	-0.0234	No
64	PDYN	1416266_at	9210	0.172	-0.0314	No
65	RHO	1425171_at 1425172_at 1451617_at 1451618_at	9262	0.166	-0.0326	No
66	GPR4	1457745_at	9420	0.151	-0.0388	No
67	NXF1	1416791_a_at	9835	0.116	-0.0570	No
68	ADAMTS4	1452595_at	9900	0.109	-0.0592	No
69	PLA2G10	1451502_at	9941	0.106	-0.0603	No
70	HOXC10	1439798_at	9977	0.103	-0.0611	No
71	OBSCN	1443632_at	9980	0.103	-0.0605	No
72	SEMA6A	1421414_a_at 1425903_at 1436458_at	10003	0.101	-0.0608	No
73	SESN3	1449303_at 1453313_at	10062	0.097	-0.0628	No
74	BOC	1426869_at 1427516_a_at 1427517_at	10156	0.090	-0.0665	No
75	NACA	1416669_s_at	10216	0.085	-0.0686	No
76	GNAO1	1421152_a_at 1448031_at 1460383_at	10395	0.069	-0.0763	No
77	PTRF	1421431_at 1424130_a_at 1453891_at	10520	0.059	-0.0816	No
78	ZNF385	1418865_at	10530	0.058	-0.0816	No
79	NYX	1446344_at	10651	0.048	-0.0868	No
80	CASQ2	1422529_s_at	10839	0.032	-0.0951	No
81	ZFPM1	1423603_at 1451046_at	11083	0.010	-0.1062	No
82	SIX4	1425767_a_at 1427701_a_at 1439753_x_at 1456862_at	11094	0.008	-0.1066	No
83	MYOG	1419391_at	11483	-0.026	-0.1243	No
84	TAL1	1449389_at	11557	-0.034	-0.1274	No
85	CACNB1	1425777_at 1426108_s_at 1440940_at 1451834_at	11572	-0.035	-0.1278	No
86	HES1	1418102_at	11685	-0.045	-0.1327	No
87	ETV1	1422607_at 1445314_at 1450684_at	11765	-0.052	-0.1359	No
88	CLTC	1419407_at 1439094_at 1440457_at 1454626_at	11806	-0.056	-0.1374	No
89	KLK9	1431681_at	11834	-0.058	-0.1382	No
90	PDLIM7	1417959_at 1428319_at 1443785_x_at	11887	-0.062	-0.1402	No
91	TITF1	1422346_at	11888	-0.062	-0.1397	No
92	TUBA1	1418884_x_at	12248	-0.093	-0.1556	No
93	PAK1IP1	1423766_at 1430875_a_at	12253	-0.094	-0.1551	No
94	CACNA1G	1423365_at	12328	-0.101	-0.1578	No
95	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	12346	-0.102	-0.1579	No
96	SP7	1418425_at	12357	-0.104	-0.1576	No
97	BCL6	1421818_at 1450381_a_at	12464	-0.113	-0.1617	No
98	MYBPH	1419487_at	12484	-0.116	-0.1618	No
99	CRMP1	1448289_at	12637	-0.129	-0.1679	No
100	NCDN	1416852_a_at 1416853_at	12697	-0.134	-0.1696	No
101	PRDM10	1441764_at 1444812_at	12716	-0.136	-0.1695	No
102	CXCR4	1448710_at	12847	-0.149	-0.1744	No
103	NR5A2	1420410_at 1449706_s_at 1449707_at	12931	-0.157	-0.1772	No
104	NPTXR	1421181_at 1434270_at 1450147_at	13076	-0.171	-0.1826	No
105	CREB3L2	1437396_at 1442080_at 1452381_at	13150	-0.178	-0.1847	No
106	CNKSR2	1444513_at 1445194_at	13231	-0.185	-0.1871	No
107	PRRX1	1425526_a_at 1425527_at 1425528_at 1432129_a_at 1439774_at 1458004_at	13248	-0.186	-0.1865	No
108	BNC2	1438861_at 1440593_at 1459132_at	13306	-0.190	-0.1878	No
109	KCNAB1	1448468_a_at 1454043_a_at	13543	-0.212	-0.1972	No
110	MNT	1418192_at	13597	-0.216	-0.1981	No
111	GSS	1441931_x_at 1448273_at	13798	-0.235	-0.2057	No
112	HARS2	1446462_at 1447677_x_at 1451040_at	13827	-0.238	-0.2053	No
113	AKT3	1422078_at 1435260_at 1435879_at 1443222_at 1460307_at	13865	-0.242	-0.2053	No
114	RHOG	1422572_at	13872	-0.243	-0.2039	No
115	RFX4	1432053_at 1436931_at 1443312_at	13982	-0.254	-0.2071	No
116	SLC7A10	1421093_at	14275	-0.284	-0.2186	No
117	DPF2	1416534_at 1429903_at	14277	-0.284	-0.2166	No
118	LZTS2	1426409_at	14369	-0.293	-0.2188	No
119	FLT1	1419300_at 1440926_at 1451756_at 1454037_a_at	14488	-0.305	-0.2220	No
120	TRIP10	1418092_s_at	14692	-0.328	-0.2291	No
121	ARID1A	1447104_at	15127	-0.377	-0.2464	No
122	IL1F10	1451957_at	15145	-0.379	-0.2445	No
123	TNRC4	1452851_at	15313	-0.396	-0.2494	No
124	TBR1	1416711_at	15450	-0.412	-0.2528	No
125	PPP1R16A	1452724_at 1459751_s_at	15515	-0.420	-0.2528	No
126	UQCRC1	1428782_a_at	15710	-0.444	-0.2586	No
127	M6PR	1416385_a_at 1416386_a_at	15762	-0.450	-0.2579	No
128	GPR3	1460275_at	15766	-0.450	-0.2548	No
129	RBBP6	1425114_at 1425115_at 1425421_at 1426487_a_at 1453611_at	15834	-0.458	-0.2547	No
130	DHH	1422127_at 1434959_at	16038	-0.484	-0.2607	No
131	EDG1	1423571_at	16576	-0.558	-0.2815	No
132	EFNA3	1431170_at 1455344_at	16720	-0.579	-0.2840	No
133	RAB1B	1424064_at	16842	-0.597	-0.2854	No
134	CKB	1455106_a_at	17140	-0.645	-0.2945	No
135	SLC2A4	1415958_at 1415959_at	17460	-0.695	-0.3044	No
136	CNN2	1450981_at	17663	-0.733	-0.3085	Yes
137	LCAT	1417043_at	17728	-0.744	-0.3063	Yes
138	TUBA3	1438611_at	17850	-0.772	-0.3064	Yes
139	OLFML2A	1441635_at 1455743_at	17865	-0.775	-0.3017	Yes
140	NDUFS2	1451096_at	17930	-0.786	-0.2991	Yes
141	VASP	1451097_at	17964	-0.792	-0.2951	Yes
142	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	18012	-0.801	-0.2917	Yes
143	PLEC1	1419835_s_at 1434610_at 1437554_at	18373	-0.891	-0.3020	Yes
144	DMPK	1422989_a_at 1434944_at	18419	-0.903	-0.2978	Yes
145	PAX7	1444596_at 1452510_at	18484	-0.916	-0.2943	Yes
146	CPNE1	1433439_at	18567	-0.937	-0.2915	Yes
147	BAHD1	1433703_s_at	18646	-0.954	-0.2885	Yes
148	PRKCBP1	1426614_at 1429415_at 1445827_at 1456143_at 1458617_at	18686	-0.962	-0.2835	Yes
149	GABRG2	1418177_at 1437147_at	18693	-0.964	-0.2771	Yes
150	RBM12	1416928_at 1416929_at 1456964_at 1457934_at	18712	-0.968	-0.2711	Yes
151	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	18781	-0.980	-0.2674	Yes
152	CCNL1	1423622_a_at 1437383_at	18881	-0.999	-0.2650	Yes
153	MGEA5	1422900_at 1422901_at 1422902_s_at 1433654_at 1439081_at	18914	-1.003	-0.2595	Yes
154	ASXL1	1434561_at 1435077_at 1458380_at	18985	-1.014	-0.2556	Yes
155	RAB5C	1424684_at	19026	-1.020	-0.2503	Yes
156	ELF4	1421337_at 1445778_at	19083	-1.029	-0.2457	Yes
157	HEBP1	1418172_at 1457903_at	19220	-1.057	-0.2446	Yes
158	CTGF	1416953_at	19314	-1.082	-0.2413	Yes
159	IMMT	1429533_at 1429534_a_at 1433470_a_at 1437126_at	19395	-1.104	-0.2372	Yes
160	MOV10	1416380_at 1447376_at	19436	-1.115	-0.2313	Yes
161	CEBPB	1418901_at 1427844_a_at	19490	-1.133	-0.2258	Yes
162	RAB4B	1451643_a_at	19575	-1.156	-0.2216	Yes
163	PYGO2	1428249_at	20103	-1.369	-0.2363	Yes
164	SMAD3	1450471_at 1450472_s_at 1454960_at	20219	-1.415	-0.2317	Yes
165	PHF12	1434922_at 1453579_at	20353	-1.488	-0.2274	Yes
166	RASGRP2	1417804_at 1438932_at 1438933_x_at 1442264_at 1449613_at	20508	-1.563	-0.2236	Yes
167	COX7A2L	1421772_a_at 1432263_a_at 1432264_x_at	20591	-1.622	-0.2160	Yes
168	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	20648	-1.657	-0.2070	Yes
169	DLGAP4	1426465_at 1455548_at	20653	-1.659	-0.1956	Yes
170	BRPF1	1460402_at	20706	-1.699	-0.1861	Yes
171	FLI1	1422024_at 1433512_at 1441584_at	20764	-1.733	-0.1766	Yes
172	DDX17	1437773_x_at 1439037_at 1452155_a_at	20908	-1.849	-0.1703	Yes
173	SH3BP1	1460222_at	21030	-1.941	-0.1623	Yes
174	ACVR1C	1428032_at 1443225_at	21076	-1.974	-0.1506	Yes
175	FKBP2	1450694_at	21180	-2.045	-0.1410	Yes
176	HIRA	1436241_s_at 1450049_a_at 1450050_at 1459103_at	21202	-2.061	-0.1276	Yes
177	SMARCD2	1426192_at 1448400_a_at 1448401_at	21324	-2.207	-0.1177	Yes
178	DCTN1	1422521_at 1435414_s_at	21342	-2.232	-0.1029	Yes
179	HNRPR	1427129_a_at 1438807_at 1452030_a_at	21371	-2.275	-0.0883	Yes
180	MAZ	1427099_at	21388	-2.301	-0.0730	Yes
181	CIC	1415746_at	21486	-2.443	-0.0604	Yes
182	GABARAP	1416937_at	21559	-2.536	-0.0460	Yes
183	DLX1	1449470_at	21642	-2.753	-0.0305	Yes
184	EMILIN1	1416414_at 1431834_a_at	21706	-2.988	-0.0125	Yes
185	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	21761	-3.303	0.0080	Yes